RNA–Protein interactions for RNA: YLR336C

SGD1, Transcript of Essential nuclear protein, yeastyeast

Gene SGD1, Length 2,700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SGD1YLR336C YPL272CQ08984 517 aa2.25□□□□□ -2.05
SGD1YLR336C CRC1Q12289 327 aa2.25□□□□□ -2.05
SGD1YLR336C SPE4Q12455 300 aa2.25□□□□□ -2.05
SGD1YLR336C PWP1P21304 576 aaKnown RBP2.25□□□□□ -2.05
SGD1YLR336C POL4P25615 582 aa2.25□□□□□ -2.05
SGD1YLR336C BUR6P40096 142 aa2.25□□□□□ -2.05
SGD1YLR336C RPS7BP48164 190 aaKnown RBP2.25□□□□□ -2.05
SGD1YLR336C YTP1P53584 459 aa2.25□□□□□ -2.05
SGD1YLR336C ERG13P54839 491 aaKnown RBP2.25□□□□□ -2.05
SGD1YLR336C YML122CQ03207 126 aa2.25□□□□□ -2.05
SGD1YLR336C YLR049CQ12110 428 aa2.25□□□□□ -2.05
SGD1YLR336C RRI1Q12468 440 aa2.25□□□□□ -2.05
SGD1YLR336C YBR126W-AQ8TGU7 68 aa2.25□□□□□ -2.05
SGD1YLR336C YPT1P01123 206 aaKnown RBP2.24□□□□□ -2.05
SGD1YLR336C HXK2P04807 486 aaKnown RBP2.24□□□□□ -2.05
SGD1YLR336C YER190C-BP0CX94 160 aa2.24□□□□□ -2.05
SGD1YLR336C YEL077W-AP0CX95 160 aa2.24□□□□□ -2.05
SGD1YLR336C YGR296C-BP0CX96 160 aa2.24□□□□□ -2.05
SGD1YLR336C YPL283W-BP0CX97 160 aa2.24□□□□□ -2.05
SGD1YLR336C YPR204C-AP0CX98 160 aa2.24□□□□□ -2.05
SGD1YLR336C AUR1P36107 401 aaPredicted RBP2.24□□□□□ -2.05
SGD1YLR336C DPB11P47027 764 aaPredicted RBP2.24□□□□□ -2.05
SGD1YLR336C DSD1P53095 428 aa2.24□□□□□ -2.05
SGD1YLR336C MED1Q12321 566 aa2.24□□□□□ -2.05
SGD1YLR336C KRS1P15180 591 aaKnown RBP2.24□□□□□ -2.05
SGD1YLR336C PDB1P32473 366 aaKnown RBP2.24□□□□□ -2.05
SGD1YLR336C ARP1P38696 384 aa2.24□□□□□ -2.05
SGD1YLR336C CFD1P40558 293 aa2.24□□□□□ -2.05
SGD1YLR336C PSA1P41940 361 aaKnown RBP2.24□□□□□ -2.05
SGD1YLR336C ARE2P53629 642 aaKnown RBP2.24□□□□□ -2.05
SGD1YLR336C ECM22Q05958 814 aaPredicted RBP2.24□□□□□ -2.05
SGD1YLR336C TCO89Q08921 799 aa2.24□□□□□ -2.05
SGD1YLR336C INP53Q12271 1107 aa2.24□□□□□ -2.05
SGD1YLR336C RAP1P11938 827 aa2.23□□□□□ -2.05
SGD1YLR336C KGD1P20967 1014 aaKnown RBP2.23□□□□□ -2.05
SGD1YLR336C OLE1P21147 510 aaKnown RBP2.23□□□□□ -2.05
SGD1YLR336C YNG2P38806 282 aaKnown RBP2.23□□□□□ -2.05
SGD1YLR336C ERP2P39704 215 aa2.23□□□□□ -2.05
SGD1YLR336C NDE1P40215 560 aa2.23□□□□□ -2.05
SGD1YLR336C PKP1P40530 394 aa2.23□□□□□ -2.05
SGD1YLR336C GAT1P43574 510 aa2.23□□□□□ -2.05
SGD1YLR336C IST1P53843 298 aaPredicted RBP2.23□□□□□ -2.05
SGD1YLR336C RPL15BP54780 204 aaPredicted RBP2.23□□□□□ -2.05
SGD1YLR336C TIM10P87108 93 aa2.23□□□□□ -2.05
SGD1YLR336C RTT109Q07794 436 aa2.23□□□□□ -2.05
SGD1YLR336C PSR1Q07800 427 aa2.23□□□□□ -2.05
SGD1YLR336C SDH5Q08230 162 aa2.23□□□□□ -2.05
SGD1YLR336C HUA2Q12134 243 aa2.23□□□□□ -2.05
SGD1YLR336C PRE8P23639 250 aa2.23□□□□□ -2.05
SGD1YLR336C CLB2P24869 491 aa2.23□□□□□ -2.05
SGD1YLR336C SGF29P25554 259 aa2.23□□□□□ -2.05
SGD1YLR336C SAC1P32368 623 aaKnown RBP2.23□□□□□ -2.05
SGD1YLR336C RPN12P32496 274 aa2.23□□□□□ -2.05
SGD1YLR336C SAC6P32599 642 aaKnown RBP2.23□□□□□ -2.05
SGD1YLR336C YPT53P36019 220 aa2.23□□□□□ -2.05
SGD1YLR336C SNU114P36048 1008 aaKnown RBP2.23□□□□□ -2.05
SGD1YLR336C YBL029WP38201 376 aa2.23□□□□□ -2.05
SGD1YLR336C LTP1P40347 161 aa2.23□□□□□ -2.05
SGD1YLR336C HXT9P40885 567 aa2.23□□□□□ -2.05
SGD1YLR336C NET1P47035 1189 aa2.23□□□□□ -2.05
SGD1YLR336C MRX6P48564 524 aa2.23□□□□□ -2.05
SGD1YLR336C STR3P53101 465 aaKnown RBP2.23□□□□□ -2.05
SGD1YLR336C MAK10Q02197 733 aa2.23□□□□□ -2.05
SGD1YLR336C RPC11Q04307 110 aaPredicted RBP2.23□□□□□ -2.05
SGD1YLR336C NMD4Q12129 218 aa2.23□□□□□ -2.05
SGD1YLR336C ARD1P07347 238 aaPredicted RBP2.22□□□□□ -2.05
SGD1YLR336C HSC82P15108 705 aaKnown RBP2.22□□□□□ -2.05
SGD1YLR336C SYN8P31377 255 aa2.22□□□□□ -2.05
SGD1YLR336C YBR225WP38321 900 aa2.22□□□□□ -2.05
SGD1YLR336C LEU5P38702 357 aa2.22□□□□□ -2.05
SGD1YLR336C DIA4P38705 446 aaPredicted RBP2.22□□□□□ -2.05
SGD1YLR336C ANS1P38832 159 aa2.22□□□□□ -2.05
SGD1YLR336C ELO1P39540 310 aa2.22□□□□□ -2.05
SGD1YLR336C UIP3P39547 235 aa2.22□□□□□ -2.05
SGD1YLR336C YPT11P48559 417 aa2.22□□□□□ -2.05
SGD1YLR336C NNF2P53253 936 aa2.22□□□□□ -2.05
SGD1YLR336C ZDS2P54786 942 aa2.22□□□□□ -2.05
SGD1YLR336C YLR112WQ12130 139 aa2.22□□□□□ -2.05
SGD1YLR336C PTP1P25044 335 aa2.22□□□□□ -2.05
SGD1YLR336C PGS1P25578 521 aa2.22□□□□□ -2.05
SGD1YLR336C CCT6P39079 546 aa2.22□□□□□ -2.05
SGD1YLR336C NPR2P39923 615 aa2.22□□□□□ -2.05
SGD1YLR336C RPS10BP46784 105 aaKnown RBP2.22□□□□□ -2.05
SGD1YLR336C YNL144CP53907 740 aa2.22□□□□□ -2.05
SGD1YLR336C STP1Q00947 519 aa2.22□□□□□ -2.05
SGD1YLR336C YML037CQ03703 340 aa2.22□□□□□ -2.05
SGD1YLR336C SWF1Q04629 336 aa2.22□□□□□ -2.05
SGD1YLR336C ADE13Q05911 482 aaKnown RBP2.22□□□□□ -2.05
SGD1YLR336C HER1Q12276 1246 aa2.22□□□□□ -2.05
SGD1YLR336C VMA16P23968 213 aa2.21□□□□□ -2.06
SGD1YLR336C YCP4P25349 247 aaKnown RBP2.21□□□□□ -2.06
SGD1YLR336C FLC2P39719 783 aa2.21□□□□□ -2.06
SGD1YLR336C ESL1P40456 1118 aa2.21□□□□□ -2.06
SGD1YLR336C YIL060WP40519 144 aa2.21□□□□□ -2.06
SGD1YLR336C SGN1P40561 250 aaKnown RBP RIP-Chip data2.21□□□□□ -2.06not detected
SGD1YLR336C UBP8P50102 471 aa2.21□□□□□ -2.06
SGD1YLR336C CAC2Q04199 468 aa2.21□□□□□ -2.06
SGD1YLR336C RPS10AQ08745 105 aaPredicted RBP2.21□□□□□ -2.06
SGD1YLR336C NOP58Q12499 511 aaKnown RBP2.21□□□□□ -2.06
SGD1YLR336C SEC53P07283 254 aaKnown RBP2.21□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 19.9 ms