RNA–Protein interactions for RNA: YDR392W

SPT3, Transcript of Subunit of the SAGA and SAGA-like transcriptional regulatory complexes, yeast

Gene SPT3, Length 1,014 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPT3	YDR392W	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
SPT3	YDR392W	SCL1	P21243	252 aa	Known RBP	4.88	□□□□□ -1.63
SPT3	YDR392W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
SPT3	YDR392W	NPP1	P25353	742 aa		4.88	□□□□□ -1.63
SPT3	YDR392W	MRP8	P35719	219 aa		4.88	□□□□□ -1.63
SPT3	YDR392W	YNG2	P38806	282 aa	Known RBP	4.88	□□□□□ -1.63
SPT3	YDR392W	SAP1	P39955	897 aa	Known RBP	4.88	□□□□□ -1.63
SPT3	YDR392W	GID8	P40208	455 aa		4.88	□□□□□ -1.63
SPT3	YDR392W	ASN1	P49089	572 aa	Known RBP	4.88	□□□□□ -1.63
SPT3	YDR392W	MNT2	P53059	558 aa		4.88	□□□□□ -1.63
SPT3	YDR392W	YNL040W	P53960	456 aa	Predicted RBP	4.88	□□□□□ -1.63
SPT3	YDR392W	CSM3	Q04659	317 aa		4.88	□□□□□ -1.63
SPT3	YDR392W	MDM30	Q05930	598 aa		4.88	□□□□□ -1.63
SPT3	YDR392W	SMD2	Q06217	110 aa	Known RBP	4.88	□□□□□ -1.63
SPT3	YDR392W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
SPT3	YDR392W	RAX1	Q08760	435 aa		4.88	□□□□□ -1.63
SPT3	YDR392W	COX17	Q12287	69 aa		4.88	□□□□□ -1.63
SPT3	YDR392W	RFA1	P22336	621 aa	Known RBP	4.87	□□□□□ -1.63
SPT3	YDR392W	GSY1	P23337	708 aa		4.87	□□□□□ -1.63
SPT3	YDR392W	YRO2	P38079	344 aa		4.87	□□□□□ -1.63
SPT3	YDR392W	MAL32	P38158	584 aa		4.87	□□□□□ -1.63
SPT3	YDR392W	YHL017W	P38745	532 aa		4.87	□□□□□ -1.63
SPT3	YDR392W	SIT1	P39980	628 aa		4.87	□□□□□ -1.63
SPT3	YDR392W	ELP2	P42935	788 aa		4.87	□□□□□ -1.63
SPT3	YDR392W	PMT4	P46971	762 aa		4.87	□□□□□ -1.63
SPT3	YDR392W	LGE1	Q02796	332 aa	Known RBP	4.87	□□□□□ -1.63
SPT3	YDR392W	ATG10	Q07879	167 aa		4.87	□□□□□ -1.63
SPT3	YDR392W	YLR030W	Q07967	263 aa		4.87	□□□□□ -1.63
SPT3	YDR392W	BCY1	P07278	416 aa	Known RBP	4.86	□□□□□ -1.63
SPT3	YDR392W	CLC1	P17891	233 aa		4.86	□□□□□ -1.63
SPT3	YDR392W	SNT1	P25357	1226 aa		4.86	□□□□□ -1.63
SPT3	YDR392W	YCR102C	P25608	368 aa		4.86	□□□□□ -1.63
SPT3	YDR392W	HOG1	P32485	435 aa		4.86	□□□□□ -1.63
SPT3	YDR392W	FRE1	P32791	686 aa		4.86	□□□□□ -1.63
SPT3	YDR392W	CTF8	P38877	133 aa		4.86	□□□□□ -1.63
SPT3	YDR392W	YAL037W	P39728	267 aa		4.86	□□□□□ -1.63
SPT3	YDR392W	YEL020C	P39994	560 aa		4.86	□□□□□ -1.63
SPT3	YDR392W	SNM1	P40993	198 aa		4.86	□□□□□ -1.63
SPT3	YDR392W	BUD6	P41697	788 aa		4.86	□□□□□ -1.63
SPT3	YDR392W	EPL1	P43572	832 aa		4.86	□□□□□ -1.63
SPT3	YDR392W	MUB1	Q03162	620 aa		4.86	□□□□□ -1.63
SPT3	YDR392W	IME1	P21190	360 aa		4.85	□□□□□ -1.63
SPT3	YDR392W	RPD3	P32561	433 aa		4.85	□□□□□ -1.63
SPT3	YDR392W	AFR1	P33304	620 aa		4.85	□□□□□ -1.63
SPT3	YDR392W	KHA1	P40309	873 aa		4.85	□□□□□ -1.63
SPT3	YDR392W	ELO3	P40319	345 aa		4.85	□□□□□ -1.63
SPT3	YDR392W	ULP2	P40537	1034 aa	Predicted RBP	4.85	□□□□□ -1.63
SPT3	YDR392W	PCL10	P53124	433 aa		4.85	□□□□□ -1.63
SPT3	YDR392W	ELP3	Q02908	557 aa	Known RBP	4.85	□□□□□ -1.63
SPT3	YDR392W	MIH1	P23748	554 aa		4.84	□□□□□ -1.63
SPT3	YDR392W	CAP1	P28495	268 aa	Known RBP	4.84	□□□□□ -1.63
SPT3	YDR392W	PPS1	P38148	807 aa		4.84	□□□□□ -1.63
SPT3	YDR392W	RSM25	P40496	264 aa		4.84	□□□□□ -1.63
SPT3	YDR392W	IRR1	P40541	1150 aa		4.84	□□□□□ -1.63
SPT3	YDR392W	YFR020W	P43600	232 aa		4.84	□□□□□ -1.63
SPT3	YDR392W	YKR011C	Q02209	353 aa		4.84	□□□□□ -1.63
SPT3	YDR392W	TUB3	P09734	445 aa	Known RBP	4.83	□□□□□ -1.64
SPT3	YDR392W	ARA1	P38115	344 aa		4.83	□□□□□ -1.64
SPT3	YDR392W	YHR210C	P38893	341 aa		4.83	□□□□□ -1.64
SPT3	YDR392W	YJR079W	P47126	109 aa		4.83	□□□□□ -1.64
SPT3	YDR392W	MUP1	P50276	574 aa		4.83	□□□□□ -1.64
SPT3	YDR392W	MRPS35	P53292	345 aa		4.83	□□□□□ -1.64
SPT3	YDR392W	MAL12	P53341	584 aa		4.83	□□□□□ -1.64
SPT3	YDR392W	PRM1	P53835	661 aa		4.83	□□□□□ -1.64
SPT3	YDR392W	SND1	Q04007	877 aa		4.83	□□□□□ -1.64
SPT3	YDR392W	NEW1	Q08972	1196 aa	Known RBP	4.83	□□□□□ -1.64
SPT3	YDR392W	YPR027C	Q12079	277 aa		4.83	□□□□□ -1.64
SPT3	YDR392W	INH1	P01097	85 aa		4.82	□□□□□ -1.64
SPT3	YDR392W	CHS1	P08004	1131 aa		4.82	□□□□□ -1.64
SPT3	YDR392W	FRS2	P15625	503 aa	Known RBP	4.82	□□□□□ -1.64
SPT3	YDR392W	DAL81	P21657	970 aa		4.82	□□□□□ -1.64
SPT3	YDR392W	RPP1	P38786	293 aa		4.82	□□□□□ -1.64
SPT3	YDR392W	ZIM17	P42844	174 aa		4.82	□□□□□ -1.64
SPT3	YDR392W	CTK3	P46963	296 aa	Predicted RBP	4.82	□□□□□ -1.64
SPT3	YDR392W	CUE3	P53137	624 aa	Known RBP	4.82	□□□□□ -1.64
SPT3	YDR392W	PGA2	P53903	129 aa		4.82	□□□□□ -1.64
SPT3	YDR392W	YDL144C	Q07589	356 aa		4.82	□□□□□ -1.64
SPT3	YDR392W	DDC1	Q08949	612 aa		4.82	□□□□□ -1.64
SPT3	YDR392W	MRH1	Q12117	320 aa	Predicted RBP	4.82	□□□□□ -1.64
SPT3	YDR392W	YKR104W	P0CE69	306 aa		4.81	□□□□□ -1.64
SPT3	YDR392W	RPS8A	P0CX39	200 aa	Known RBP	4.81	□□□□□ -1.64
SPT3	YDR392W	RPS8B	P0CX40	200 aa	Known RBP	4.81	□□□□□ -1.64
SPT3	YDR392W	REC104	P33323	182 aa		4.81	□□□□□ -1.64
SPT3	YDR392W	YKL069W	P36088	180 aa		4.81	□□□□□ -1.64
SPT3	YDR392W	CDC1	P40986	491 aa		4.81	□□□□□ -1.64
SPT3	YDR392W	EMC4	P53073	190 aa		4.81	□□□□□ -1.64
SPT3	YDR392W	RCN2	Q12044	265 aa		4.81	□□□□□ -1.64
SPT3	YDR392W	YDR018C	Q12185	396 aa		4.81	□□□□□ -1.64
SPT3	YDR392W	AIM44	Q99299	758 aa		4.81	□□□□□ -1.64
SPT3	YDR392W	ILS1	P09436	1072 aa	Known RBP	4.8	□□□□□ -1.64
SPT3	YDR392W	HOM3	P10869	527 aa		4.8	□□□□□ -1.64
SPT3	YDR392W	GFA1	P14742	717 aa	Known RBP	4.8	□□□□□ -1.64
SPT3	YDR392W	MEF1	P25039	761 aa		4.8	□□□□□ -1.64
SPT3	YDR392W	CDC13	P32797	924 aa	Known RBP	4.8	□□□□□ -1.64
SPT3	YDR392W	TOK1	P40310	691 aa		4.8	□□□□□ -1.64
SPT3	YDR392W	PRP24	P49960	444 aa	Known RBP	4.8	□□□□□ -1.64
SPT3	YDR392W	AMA1	P50082	593 aa		4.8	□□□□□ -1.64
SPT3	YDR392W	HRD3	Q05787	833 aa		4.8	□□□□□ -1.64
SPT3	YDR392W	YLH47	Q06493	454 aa		4.8	□□□□□ -1.64
SPT3	YDR392W	GET3	Q12154	354 aa	Known RBP	4.8	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 20.8 ms