RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SAMD15Q9P1V8 674 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 MOSPD1Q9UJG1 213 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 HPCAL4Q9UM19 191 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 PIK3C2GO75747 1445 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 TXKP42681 527 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 DOK7Q18PE1 504 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 ANO6Q4KMQ2 910 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 GBP6Q6ZN66 633 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 POMGNT1Q8WZA1 660 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 SLC52A2Q9HAB3 445 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 DISC1Q9NRI5 854 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 TMEM247A6NEH6 219 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 VAV2P52735 878 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 PLIN2Q99541 437 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 PLXNC1O60486 1568 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 FAM83GA6ND36 823 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 CCDC62Q6P9F0 684 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 FBXO11Q86XK2 927 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 CFAP36Q96G28 342 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 PSTPIP2Q9H939 334 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 TRMT1Q9NXH9 659 aaKnown RBP6.74□□□□□ -1.33
SCN1A-217ENST00000637988 KIF3CO14782 793 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 BCAMP50895 628 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 WASHC5Q12768 1159 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 SCYL2Q6P3W7 929 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 DHX32Q7L7V1 743 aaKnown RBP6.74□□□□□ -1.33
SCN1A-217ENST00000637988 SNX29Q8TEQ0 813 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 MGEA5O60502 916 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 CTSWP56202 376 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 LACTBP83111 547 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-217ENST00000637988 PPP4R4Q6NUP7 873 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 RAB42Q8N4Z0 105 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 UBLCP1Q8WVY7 318 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-217ENST00000637988 LRRC2Q9BYS8 371 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 ARMT1Q9H993 441 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 DOLKQ9UPQ8 538 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 A0A1B0GUL7 405 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 CASQ2O14958 399 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-217ENST00000637988 PPFIA2O75334 1257 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 HOXC9P31274 260 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 CIAPIN1Q6FI81 312 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 CC2D1AQ6P1N0 951 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-217ENST00000637988 SLC7A3Q8WY07 619 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 RIC8AQ9NPQ8 531 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 TNNQ9UQP3 1299 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 ATP10DQ9P241 1426 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 HSPA8P11142 646 aaKnown RBP6.73□□□□□ -1.33
SCN1A-217ENST00000637988 NPR1P16066 1061 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 BSPRYQ5W0U4 402 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 SDE2Q6IQ49 451 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 INTS8Q75QN2 995 aaKnown RBP6.73□□□□□ -1.33
SCN1A-217ENST00000637988 SPON1Q9HCB6 807 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 GARSP41250 739 aaKnown RBP6.73□□□□□ -1.33
SCN1A-217ENST00000637988 SREBF2Q12772 1141 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 CROCCP2Q86T23 111 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 RDH13Q8NBN7 331 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 BABAM1Q9NWV8 329 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 TBX22Q9Y458 520 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 ECE1P42892 770 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 STAT2P52630 851 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 EIF2B5Q13144 721 aaKnown RBP6.73□□□□□ -1.33
SCN1A-217ENST00000637988 PSMD2Q13200 908 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 ZNF174Q15697 407 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 CYP26C1Q6V0L0 522 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 PIK3AP1Q6ZUJ8 805 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 ARMCX2Q7L311 632 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 ARHGAP45Q92619 1136 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 FAM81BQ96LP2 452 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 GCC2Q8IWJ2 1684 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 EIF3CLB5ME19 914 aaKnown RBP6.73□□□□□ -1.33
SCN1A-217ENST00000637988 RC3H1Q5TC82 1133 aaKnown RBP6.73□□□□□ -1.33
SCN1A-217ENST00000637988 P3H4Q92791 437 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 SDCCAG3Q96C92 435 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 EIF3CQ99613 913 aaKnown RBP6.73□□□□□ -1.33
SCN1A-217ENST00000637988 CTNND2Q9UQB3 1225 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 PTPRKQ15262 1439 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 ELP1O95163 1332 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 USP17L3A6NCW0 530 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 USP17L4A6NCW7 530 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 SMIM23A6NLE4 172 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 GIGYF1O75420 1035 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-217ENST00000637988 ARL4DP49703 201 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 SCNN1DP51172 638 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 EPHB1P54762 984 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 GKAP1Q5VSY0 366 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-217ENST00000637988 USP17L1Q7RTZ2 530 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 TADA2BQ86TJ2 420 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 EFHBQ8N7U6 833 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 XAGE2Q96GT9 111 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 SCYL1Q96KG9 808 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 DDX21Q9NR30 783 aaKnown RBP eCLIP6.73□□□□□ -1.33
SCN1A-217ENST00000637988 G3BP2Q9UN86 482 aaKnown RBP6.73□□□□□ -1.33
SCN1A-217ENST00000637988 LEMD3Q9Y2U8 911 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 ERICH4A6NGS2 130 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 K7ENM7 598 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 SORBS3O60504 671 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 OCM2P0CE71 109 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 OCMP0CE72 109 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-217ENST00000637988 TRIM27P14373 513 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 IFNA8P32881 189 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms