RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 ZSCAN25Q6NSZ9 544 aa28.59■■■□□ 2.17
CPSF1-214ENST00000622776 CTR9Q6PD62 1173 aa28.59■■■□□ 2.17
CPSF1-214ENST00000622776 MAML3Q96JK9 1138 aa28.59■■■□□ 2.17
CPSF1-214ENST00000622776 ADAMTS5Q9UNA0 930 aa28.59■■■□□ 2.17
CPSF1-214ENST00000622776 KBTBD13C9JR72 458 aa28.58■■■□□ 2.17
CPSF1-214ENST00000622776 SLC25A27O95847 323 aa28.58■■■□□ 2.17
CPSF1-214ENST00000622776 LRRCC1Q9C099 1032 aa28.58■■■□□ 2.17
CPSF1-214ENST00000622776 PUS7LQ9H0K6 701 aaKnown RBP28.58■■■□□ 2.17
CPSF1-214ENST00000622776 FBXO28Q9NVF7 368 aa28.58■■■□□ 2.17
CPSF1-214ENST00000622776 PRKAG2Q9UGJ0 569 aa28.58■■■□□ 2.17
CPSF1-214ENST00000622776 ATP11BQ9Y2G3 1177 aa28.58■■■□□ 2.17
CPSF1-214ENST00000622776 STXBP5LQ9Y2K9 1186 aa28.58■■■□□ 2.17
CPSF1-214ENST00000622776 DLL1O00548 723 aa28.57■■■□□ 2.16
CPSF1-214ENST00000622776 SLC39A5Q6ZMH5 540 aa28.57■■■□□ 2.16
CPSF1-214ENST00000622776 MYH7P12883 1935 aa28.57■■■□□ 2.16
CPSF1-214ENST00000622776 ZNFX1Q9P2E3 1918 aaKnown RBP28.57■■■□□ 2.16
CPSF1-214ENST00000622776 MYCNP04198 464 aaPredicted RBP28.56■■■□□ 2.16
CPSF1-214ENST00000622776 PARP14Q460N5 1801 aa28.56■■■□□ 2.16
CPSF1-214ENST00000622776 RIOX2Q8IUF8 465 aa28.56■■■□□ 2.16
CPSF1-214ENST00000622776 GOPCQ9HD26 462 aa28.56■■■□□ 2.16
CPSF1-214ENST00000622776 RCAN3Q9UKA8 241 aa28.56■■■□□ 2.16
CPSF1-214ENST00000622776 SMCHD1A6NHR9 2005 aa28.55■■■□□ 2.16
CPSF1-214ENST00000622776 SMARCA5O60264 1052 aaPredicted RBP28.55■■■□□ 2.16
CPSF1-214ENST00000622776 MMP19Q99542 508 aa28.55■■■□□ 2.16
CPSF1-214ENST00000622776 LRRC41Q15345 812 aa28.54■■■□□ 2.16
CPSF1-214ENST00000622776 ARPP21Q9UBL0 812 aaPredicted RBP28.54■■■□□ 2.16
CPSF1-214ENST00000622776 PPP1R9AQ9ULJ8 1098 aa28.54■■■□□ 2.16
CPSF1-214ENST00000622776 VWA5AO00534 786 aa28.53■■■□□ 2.16
CPSF1-214ENST00000622776 RAD21O60216 631 aa28.53■■■□□ 2.16
CPSF1-214ENST00000622776 STAT3P40763 770 aa28.53■■■□□ 2.16
CPSF1-214ENST00000622776 ADCYAP1R1P41586 468 aa28.53■■■□□ 2.16
CPSF1-214ENST00000622776 FAM47AQ5JRC9 791 aa28.53■■■□□ 2.16
CPSF1-214ENST00000622776 FAM83BQ5T0W9 1011 aa28.53■■■□□ 2.16
CPSF1-214ENST00000622776 STRBPQ96SI9 672 aaKnown RBP28.53■■■□□ 2.16
CPSF1-214ENST00000622776 GNL3Q9BVP2 549 aaKnown RBP eCLIP28.53■■■□□ 2.16
CPSF1-214ENST00000622776 NRBP1Q9UHY1 535 aa28.53■■■□□ 2.16
CPSF1-214ENST00000622776 PGK2P07205 417 aa28.52■■■□□ 2.16
CPSF1-214ENST00000622776 KCTD2Q14681 263 aa28.52■■■□□ 2.16
CPSF1-214ENST00000622776 SNX17Q15036 470 aa28.52■■■□□ 2.16
CPSF1-214ENST00000622776 ECHDC1Q9NTX5 307 aa28.52■■■□□ 2.16
CPSF1-214ENST00000622776 ZNF214Q9UL59 606 aaPredicted RBP28.52■■■□□ 2.16
CPSF1-214ENST00000622776 COL11A1P12107 1806 aaPredicted RBP28.52■■■□□ 2.16
CPSF1-214ENST00000622776 LAMA2P24043 3122 aaKnown RBP28.52■■■□□ 2.16
CPSF1-214ENST00000622776 POTEB2H3BUK9 544 aa28.51■■■□□ 2.15
CPSF1-214ENST00000622776 TRIM60Q495X7 471 aa28.51■■■□□ 2.15
CPSF1-214ENST00000622776 SBK1Q52WX2 424 aa28.51■■■□□ 2.15
CPSF1-214ENST00000622776 C20orf194Q5TEA3 1177 aa28.51■■■□□ 2.15
CPSF1-214ENST00000622776 FERMT2Q96AC1 680 aa28.51■■■□□ 2.15
CPSF1-214ENST00000622776 DIS3Q9Y2L1 958 aaKnown RBP28.51■■■□□ 2.15
CPSF1-214ENST00000622776 COPB2P35606 906 aa28.5■■■□□ 2.15
CPSF1-214ENST00000622776 ZNF792Q3KQV3 632 aa28.5■■■□□ 2.15
CPSF1-214ENST00000622776 FAM109BQ6ICB4 259 aaPredicted RBP28.5■■■□□ 2.15
CPSF1-214ENST00000622776 REPS2Q8NFH8 660 aa28.5■■■□□ 2.15
CPSF1-214ENST00000622776 TINF2Q9BSI4 451 aa28.5■■■□□ 2.15
CPSF1-214ENST00000622776 PRDM5Q9NQX1 630 aaPredicted RBP28.5■■■□□ 2.15
CPSF1-214ENST00000622776 GSG1L2A8MUP6 293 aa28.49■■■□□ 2.15
CPSF1-214ENST00000622776 RASA1P20936 1047 aa28.49■■■□□ 2.15
CPSF1-214ENST00000622776 RARBP10826 455 aa28.48■■■□□ 2.15
CPSF1-214ENST00000622776 C1orf53Q5VUE5 145 aa28.48■■■□□ 2.15
CPSF1-214ENST00000622776 GIMAP6Q6P9H5 292 aa28.48■■■□□ 2.15
CPSF1-214ENST00000622776 STK11IPQ8N1F8 1099 aa28.48■■■□□ 2.15
CPSF1-214ENST00000622776 KBTBD3Q8NAB2 608 aa28.48■■■□□ 2.15
CPSF1-214ENST00000622776 MKNK2Q9HBH9 465 aa28.48■■■□□ 2.15
CPSF1-214ENST00000622776 XPNPEP3Q9NQH7 507 aa28.48■■■□□ 2.15
CPSF1-214ENST00000622776 LTBP2Q14767 1821 aa28.48■■■□□ 2.15
CPSF1-214ENST00000622776 TAL1P17542 331 aaPredicted RBP28.47■■■□□ 2.15
CPSF1-214ENST00000622776 OSBP2Q969R2 916 aa28.47■■■□□ 2.15
CPSF1-214ENST00000622776 NUP88Q99567 741 aaPredicted RBP28.47■■■□□ 2.15
CPSF1-214ENST00000622776 SLF1Q9BQI6 1058 aa28.47■■■□□ 2.15
CPSF1-214ENST00000622776 PDLIM7Q9NR12 457 aa28.47■■■□□ 2.15
CPSF1-214ENST00000622776 NYAP2Q9P242 653 aa28.47■■■□□ 2.15
CPSF1-214ENST00000622776 PHF24Q9UPV7 400 aa28.47■■■□□ 2.15
CPSF1-214ENST00000622776 GREB1LQ9C091 1923 aaPredicted RBP28.46■■■□□ 2.15
CPSF1-214ENST00000622776 MINDY4BA8MYZ0 360 aa28.46■■■□□ 2.15
CPSF1-214ENST00000622776 SHHQ15465 462 aa28.46■■■□□ 2.15
CPSF1-214ENST00000622776 APPBP2Q92624 585 aa28.46■■■□□ 2.15
CPSF1-214ENST00000622776 BADQ92934 168 aa28.46■■■□□ 2.15
CPSF1-214ENST00000622776 F5H6K3 240 aa28.45■■■□□ 2.14
CPSF1-214ENST00000622776 PGK1P00558 417 aa28.45■■■□□ 2.14
CPSF1-214ENST00000622776 ZNF865P0CJ78 1059 aaPredicted RBP28.45■■■□□ 2.14
CPSF1-214ENST00000622776 TLE2Q04725 743 aa28.45■■■□□ 2.14
CPSF1-214ENST00000622776 KLRC3Q07444 240 aa28.45■■■□□ 2.14
CPSF1-214ENST00000622776 SH3RF1Q7Z6J0 888 aa28.45■■■□□ 2.14
CPSF1-214ENST00000622776 RNF180Q86T96 592 aa28.45■■■□□ 2.14
CPSF1-214ENST00000622776 TEX13BQ9BXU2 312 aa28.45■■■□□ 2.14
CPSF1-214ENST00000622776 PLXNA1Q9UIW2 1896 aa28.44■■■□□ 2.14
CPSF1-214ENST00000622776 TRIM43BA6NCK2 446 aa28.44■■■□□ 2.14
CPSF1-214ENST00000622776 RNF113AO15541 343 aaKnown RBP28.44■■■□□ 2.14
CPSF1-214ENST00000622776 NDUFB10O96000 172 aa28.44■■■□□ 2.14
CPSF1-214ENST00000622776 C9orf50Q5SZB4 431 aa28.44■■■□□ 2.14
CPSF1-214ENST00000622776 TRIM43Q96BQ3 446 aaPredicted RBP28.44■■■□□ 2.14
CPSF1-214ENST00000622776 GPATCH3Q96I76 525 aa28.44■■■□□ 2.14
CPSF1-214ENST00000622776 GUCD1Q96NT3 240 aa28.44■■■□□ 2.14
CPSF1-214ENST00000622776 DCTPP1Q9H773 170 aa28.44■■■□□ 2.14
CPSF1-214ENST00000622776 ROBO3Q96MS0 1386 aa28.44■■■□□ 2.14
CPSF1-214ENST00000622776 AKR1A1P14550 325 aa28.43■■■□□ 2.14
CPSF1-214ENST00000622776 TSHZ3Q63HK5 1081 aa28.43■■■□□ 2.14
CPSF1-214ENST00000622776 CNPY2Q9Y2B0 182 aa28.43■■■□□ 2.14
CPSF1-214ENST00000622776 GPAA1O43292 621 aa28.42■■■□□ 2.14
CPSF1-214ENST00000622776 ZFYP08048 801 aaPredicted RBP28.42■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms