RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 NCAPG2Q86XI2 1143 aa22.72■■□□□ 1.23
CDX1-202ENST00000616154 UBE2OQ9C0C9 1292 aaKnown RBP22.72■■□□□ 1.23
CDX1-202ENST00000616154 SENP6Q9GZR1 1112 aaPredicted RBP22.72■■□□□ 1.23
CDX1-202ENST00000616154 ADAMTS5Q9UNA0 930 aa22.72■■□□□ 1.23
CDX1-202ENST00000616154 PLXNA1Q9UIW2 1896 aa22.72■■□□□ 1.23
CDX1-202ENST00000616154 HDAC1Q13547 482 aaPredicted RBP22.71■■□□□ 1.23
CDX1-202ENST00000616154 TMEM132BQ14DG7 1078 aa22.71■■□□□ 1.23
CDX1-202ENST00000616154 STRBPQ96SI9 672 aaKnown RBP22.71■■□□□ 1.23
CDX1-202ENST00000616154 SLC25A27O95847 323 aa22.7■■□□□ 1.22
CDX1-202ENST00000616154 SBK1Q52WX2 424 aa22.7■■□□□ 1.22
CDX1-202ENST00000616154 KBTBD3Q8NAB2 608 aa22.7■■□□□ 1.22
CDX1-202ENST00000616154 GPATCH3Q96I76 525 aa22.7■■□□□ 1.22
CDX1-202ENST00000616154 GOPCQ9HD26 462 aa22.7■■□□□ 1.22
CDX1-202ENST00000616154 ROBO3Q96MS0 1386 aa22.69■■□□□ 1.22
CDX1-202ENST00000616154 SEPT4O43236 478 aa22.69■■□□□ 1.22
CDX1-202ENST00000616154 GIMAP6Q6P9H5 292 aa22.69■■□□□ 1.22
CDX1-202ENST00000616154 ARRDC4Q8NCT1 418 aa22.69■■□□□ 1.22
CDX1-202ENST00000616154 MAML3Q96JK9 1138 aa22.69■■□□□ 1.22
CDX1-202ENST00000616154 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.69■■□□□ 1.22
CDX1-202ENST00000616154 FBXO28Q9NVF7 368 aa22.69■■□□□ 1.22
CDX1-202ENST00000616154 TTC41PQ6P2S7 1318 aa22.69■■□□□ 1.22
CDX1-202ENST00000616154 LTBP2Q14767 1821 aa22.68■■□□□ 1.22
CDX1-202ENST00000616154 GSG1L2A8MUP6 293 aa22.68■■□□□ 1.22
CDX1-202ENST00000616154 FCER1AP12319 257 aa22.68■■□□□ 1.22
CDX1-202ENST00000616154 SAMD1Q6SPF0 538 aaPredicted RBP22.68■■□□□ 1.22
CDX1-202ENST00000616154 RIOX2Q8IUF8 465 aa22.68■■□□□ 1.22
CDX1-202ENST00000616154 PPP1R9AQ9ULJ8 1098 aa22.68■■□□□ 1.22
CDX1-202ENST00000616154 MYH4Q9Y623 1939 aa22.68■■□□□ 1.22
CDX1-202ENST00000616154 SALL3Q9BXA9 1300 aa22.68■■□□□ 1.22
CDX1-202ENST00000616154 SMCHD1A6NHR9 2005 aa22.67■■□□□ 1.22
CDX1-202ENST00000616154 APPBP2Q92624 585 aa22.67■■□□□ 1.22
CDX1-202ENST00000616154 COL6A3P12111 3177 aa22.67■■□□□ 1.22
CDX1-202ENST00000616154 VWA5AO00534 786 aa22.66■■□□□ 1.22
CDX1-202ENST00000616154 RASA1P20936 1047 aa22.66■■□□□ 1.22
CDX1-202ENST00000616154 ATN1P54259 1190 aaPredicted RBP22.66■■□□□ 1.22
CDX1-202ENST00000616154 MDM2Q00987 491 aaPredicted RBP22.66■■□□□ 1.22
CDX1-202ENST00000616154 GJC2Q5T442 439 aaPredicted RBP22.66■■□□□ 1.22
CDX1-202ENST00000616154 OSBP2Q969R2 916 aa22.66■■□□□ 1.22
CDX1-202ENST00000616154 MMP19Q99542 508 aa22.66■■□□□ 1.22
CDX1-202ENST00000616154 KBTBD13C9JR72 458 aa22.65■■□□□ 1.22
CDX1-202ENST00000616154 RNF113AO15541 343 aaKnown RBP22.65■■□□□ 1.22
CDX1-202ENST00000616154 ZFYP08048 801 aaPredicted RBP22.65■■□□□ 1.22
CDX1-202ENST00000616154 COPB2P35606 906 aa22.65■■□□□ 1.22
CDX1-202ENST00000616154 RTP1P59025 263 aa22.65■■□□□ 1.22
CDX1-202ENST00000616154 PRAMEF19Q5SWL8 479 aa22.65■■□□□ 1.22
CDX1-202ENST00000616154 FAM83BQ5T0W9 1011 aa22.65■■□□□ 1.22
CDX1-202ENST00000616154 ANO1Q5XXA6 986 aa22.65■■□□□ 1.22
CDX1-202ENST00000616154 REPS2Q8NFH8 660 aa22.65■■□□□ 1.22
CDX1-202ENST00000616154 PI4K2BQ8TCG2 481 aa22.65■■□□□ 1.22
CDX1-202ENST00000616154 NRBP1Q9UHY1 535 aa22.65■■□□□ 1.22
CDX1-202ENST00000616154 ZNF214Q9UL59 606 aaPredicted RBP22.65■■□□□ 1.22
CDX1-202ENST00000616154 STAT3P40763 770 aa22.64■■□□□ 1.22
CDX1-202ENST00000616154 TSHZ3Q63HK5 1081 aa22.64■■□□□ 1.22
CDX1-202ENST00000616154 MKNK2Q9HBH9 465 aa22.64■■□□□ 1.22
CDX1-202ENST00000616154 NYAP2Q9P242 653 aa22.64■■□□□ 1.22
CDX1-202ENST00000616154 MINDY4BA8MYZ0 360 aa22.63■■□□□ 1.21
CDX1-202ENST00000616154 GPAA1O43292 621 aa22.63■■□□□ 1.21
CDX1-202ENST00000616154 RAD21O60216 631 aa22.63■■□□□ 1.21
CDX1-202ENST00000616154 KCTD2Q14681 263 aa22.63■■□□□ 1.21
CDX1-202ENST00000616154 LBHD1Q9BQE6 289 aaPredicted RBP22.63■■□□□ 1.21
CDX1-202ENST00000616154 EPB41L4AQ9HCS5 686 aaPredicted RBP22.63■■□□□ 1.21
CDX1-202ENST00000616154 DIS3Q9Y2L1 958 aaKnown RBP22.63■■□□□ 1.21
CDX1-202ENST00000616154 ERC2O15083 957 aa22.62■■□□□ 1.21
CDX1-202ENST00000616154 PGK2P07205 417 aa22.62■■□□□ 1.21
CDX1-202ENST00000616154 GNAT2P19087 354 aa22.62■■□□□ 1.21
CDX1-202ENST00000616154 SNX17Q15036 470 aa22.62■■□□□ 1.21
CDX1-202ENST00000616154 ZNF792Q3KQV3 632 aa22.62■■□□□ 1.21
CDX1-202ENST00000616154 SLC39A5Q6ZMH5 540 aa22.62■■□□□ 1.21
CDX1-202ENST00000616154 DEFB123Q8N688 67 aa22.62■■□□□ 1.21
CDX1-202ENST00000616154 OTUD7AQ8TE49 926 aaPredicted RBP22.62■■□□□ 1.21
CDX1-202ENST00000616154 SLF1Q9BQI6 1058 aa22.62■■□□□ 1.21
CDX1-202ENST00000616154 TINF2Q9BSI4 451 aa22.62■■□□□ 1.21
CDX1-202ENST00000616154 IGKV6D-41A0A0C4DH26 115 aa22.61■■□□□ 1.21
CDX1-202ENST00000616154 LRRC41Q15345 812 aa22.61■■□□□ 1.21
CDX1-202ENST00000616154 FAM47AQ5JRC9 791 aa22.61■■□□□ 1.21
CDX1-202ENST00000616154 STK11IPQ8N1F8 1099 aa22.61■■□□□ 1.21
CDX1-202ENST00000616154 NUP88Q99567 741 aaPredicted RBP22.61■■□□□ 1.21
CDX1-202ENST00000616154 PRKAG2Q9UGJ0 569 aa22.61■■□□□ 1.21
CDX1-202ENST00000616154 ATP11BQ9Y2G3 1177 aa22.61■■□□□ 1.21
CDX1-202ENST00000616154 F5H6K3 240 aa22.6■■□□□ 1.21
CDX1-202ENST00000616154 M0R2C6 588 aa22.6■■□□□ 1.21
CDX1-202ENST00000616154 NDUFB10O96000 172 aa22.6■■□□□ 1.21
CDX1-202ENST00000616154 MX1P20591 662 aa22.6■■□□□ 1.21
CDX1-202ENST00000616154 TDO2P48775 406 aa22.6■■□□□ 1.21
CDX1-202ENST00000616154 KLRC3Q07444 240 aa22.6■■□□□ 1.21
CDX1-202ENST00000616154 LRRFIP1Q32MZ4 808 aaKnown RBP22.6■■□□□ 1.21
CDX1-202ENST00000616154 Q7L0L9 218 aa22.6■■□□□ 1.21
CDX1-202ENST00000616154 TEX13BQ9BXU2 312 aa22.6■■□□□ 1.21
CDX1-202ENST00000616154 ZNF287Q9HBT7 754 aa22.6■■□□□ 1.21
CDX1-202ENST00000616154 MYCNP04198 464 aaPredicted RBP22.59■■□□□ 1.21
CDX1-202ENST00000616154 C1orf53Q5VUE5 145 aa22.59■■□□□ 1.21
CDX1-202ENST00000616154 SMC5Q8IY18 1101 aa22.59■■□□□ 1.21
CDX1-202ENST00000616154 RARBP10826 455 aa22.58■■□□□ 1.21
CDX1-202ENST00000616154 ADCYAP1R1P41586 468 aa22.58■■□□□ 1.21
CDX1-202ENST00000616154 PRPF38AQ8NAV1 312 aaKnown RBP22.58■■□□□ 1.21
CDX1-202ENST00000616154 SLC17A8Q8NDX2 589 aa22.58■■□□□ 1.21
CDX1-202ENST00000616154 MKL1Q969V6 931 aa22.58■■□□□ 1.21
CDX1-202ENST00000616154 XPNPEP3Q9NQH7 507 aa22.58■■□□□ 1.21
CDX1-202ENST00000616154 SYNPO2Q9UMS6 1093 aa22.58■■□□□ 1.21
CDX1-202ENST00000616154 PHF24Q9UPV7 400 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms