RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 LAMA2P24043 3122 aaKnown RBP15.06■□□□□ 0
TRIM28-212ENST00000597995 USP17L12C9JPN9 530 aa15.05■□□□□ -0
TRIM28-212ENST00000597995 USP17L21D6R901 530 aa15.05■□□□□ -0
TRIM28-212ENST00000597995 TMEM132BQ14DG7 1078 aa15.05■□□□□ -0
TRIM28-212ENST00000597995 LRRC41Q15345 812 aa15.05■□□□□ -0
TRIM28-212ENST00000597995 PRAMEF19Q5SWL8 479 aa15.05■□□□□ -0
TRIM28-212ENST00000597995 ANO1Q5XXA6 986 aa15.05■□□□□ -0
TRIM28-212ENST00000597995 RIOX2Q8IUF8 465 aa15.05■□□□□ -0
TRIM28-212ENST00000597995 CLEC10AQ8IUN9 316 aa15.05■□□□□ -0
TRIM28-212ENST00000597995 CHMP4BQ9H444 224 aaKnown RBP15.05■□□□□ -0
TRIM28-212ENST00000597995 MYH8P13535 1937 aa15.05■□□□□ -0
TRIM28-212ENST00000597995 ZNFX1Q9P2E3 1918 aaKnown RBP15.04■□□□□ -0
TRIM28-212ENST00000597995 EEF2P13639 858 aaKnown RBP15.04■□□□□ -0
TRIM28-212ENST00000597995 COPB2P35606 906 aa15.04■□□□□ -0
TRIM28-212ENST00000597995 ADCYAP1R1P41586 468 aa15.04■□□□□ -0
TRIM28-212ENST00000597995 TRIM60Q495X7 471 aa15.04■□□□□ -0
TRIM28-212ENST00000597995 SLFNL1Q499Z3 407 aa15.04■□□□□ -0
TRIM28-212ENST00000597995 ZSCAN25Q6NSZ9 544 aa15.04■□□□□ -0
TRIM28-212ENST00000597995 GUCD1Q96NT3 240 aa15.04■□□□□ -0
TRIM28-212ENST00000597995 MMP19Q99542 508 aa15.04■□□□□ -0
TRIM28-212ENST00000597995 GOPCQ9HD26 462 aa15.04■□□□□ -0
TRIM28-212ENST00000597995 BAZ2AQ9UIF9 1905 aaKnown RBP15.04■□□□□ -0
TRIM28-212ENST00000597995 LTBP2Q14767 1821 aa15.03■□□□□ -0
TRIM28-212ENST00000597995 CYP2D7A0A087X1C5 515 aa15.03■□□□□ -0
TRIM28-212ENST00000597995 VWA5AO00534 786 aa15.03■□□□□ -0
TRIM28-212ENST00000597995 MYCNP04198 464 aaPredicted RBP15.03■□□□□ -0
TRIM28-212ENST00000597995 STAT3P40763 770 aa15.03■□□□□ -0
TRIM28-212ENST00000597995 SHHQ15465 462 aa15.03■□□□□ -0
TRIM28-212ENST00000597995 ZNF792Q3KQV3 632 aa15.03■□□□□ -0
TRIM28-212ENST00000597995 FAM47AQ5JRC9 791 aa15.03■□□□□ -0
TRIM28-212ENST00000597995 ZNF697Q5TEC3 545 aa15.03■□□□□ -0
TRIM28-212ENST00000597995 PDLIM7Q9NR12 457 aa15.03■□□□□ -0
TRIM28-212ENST00000597995 PPP1R9AQ9ULJ8 1098 aa15.03■□□□□ -0
TRIM28-212ENST00000597995 PHF24Q9UPV7 400 aa15.03■□□□□ -0
TRIM28-212ENST00000597995 SLC4A4Q9Y6R1 1079 aa15.03■□□□□ -0
TRIM28-212ENST00000597995 SMCHD1A6NHR9 2005 aa15.03■□□□□ -0
TRIM28-212ENST00000597995 PARP14Q460N5 1801 aa15.03■□□□□ -0
TRIM28-212ENST00000597995 SMIM22K7EJ46 135 aa15.02■□□□□ -0
TRIM28-212ENST00000597995 SMARCA5O60264 1052 aaPredicted RBP15.02■□□□□ -0
TRIM28-212ENST00000597995 RARBP10826 455 aa15.02■□□□□ -0
TRIM28-212ENST00000597995 KCTD2Q14681 263 aa15.02■□□□□ -0
TRIM28-212ENST00000597995 CTR9Q6PD62 1173 aa15.02■□□□□ -0
TRIM28-212ENST00000597995 SAMD1Q6SPF0 538 aaPredicted RBP15.02■□□□□ -0
TRIM28-212ENST00000597995 RNF180Q86T96 592 aa15.02■□□□□ -0
TRIM28-212ENST00000597995 BADQ92934 168 aa15.02■□□□□ -0
TRIM28-212ENST00000597995 TINF2Q9BSI4 451 aa15.02■□□□□ -0
TRIM28-212ENST00000597995 BCL11AQ9H165 835 aa15.02■□□□□ -0
TRIM28-212ENST00000597995 XPNPEP3Q9NQH7 507 aa15.02■□□□□ -0
TRIM28-212ENST00000597995 PRDM5Q9NQX1 630 aaPredicted RBP15.02■□□□□ -0
TRIM28-212ENST00000597995 FBXO28Q9NVF7 368 aa15.02■□□□□ -0
TRIM28-212ENST00000597995 TACC3Q9Y6A5 838 aa15.02■□□□□ -0
TRIM28-212ENST00000597995 ROBO3Q96MS0 1386 aa15.01□□□□□ -0.01
TRIM28-212ENST00000597995 TRIM43BA6NCK2 446 aa15.01□□□□□ -0.01
TRIM28-212ENST00000597995 SMAD3P84022 425 aaKnown RBP15.01□□□□□ -0.01
TRIM28-212ENST00000597995 TLE2Q04725 743 aa15.01□□□□□ -0.01
TRIM28-212ENST00000597995 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.01□□□□□ -0.01
TRIM28-212ENST00000597995 REPS2Q8NFH8 660 aa15.01□□□□□ -0.01
TRIM28-212ENST00000597995 FERMT2Q96AC1 680 aa15.01□□□□□ -0.01
TRIM28-212ENST00000597995 TRIM43Q96BQ3 446 aaPredicted RBP15.01□□□□□ -0.01
TRIM28-212ENST00000597995 ARPP21Q9UBL0 812 aaPredicted RBP15.01□□□□□ -0.01
TRIM28-212ENST00000597995 ZNF214Q9UL59 606 aaPredicted RBP15.01□□□□□ -0.01
TRIM28-212ENST00000597995 PCDHB15Q9Y5E8 787 aa15.01□□□□□ -0.01
TRIM28-212ENST00000597995 UNC80Q8N2C7 3258 aa15□□□□□ -0.01
TRIM28-212ENST00000597995 PGK2P07205 417 aa15□□□□□ -0.01
TRIM28-212ENST00000597995 ZNF865P0CJ78 1059 aaPredicted RBP15□□□□□ -0.01
TRIM28-212ENST00000597995 AKR1A1P14550 325 aa15□□□□□ -0.01
TRIM28-212ENST00000597995 RRP1P56182 461 aaKnown RBP15□□□□□ -0.01
TRIM28-212ENST00000597995 SBK1Q52WX2 424 aa15□□□□□ -0.01
TRIM28-212ENST00000597995 C9orf50Q5SZB4 431 aa15□□□□□ -0.01
TRIM28-212ENST00000597995 FAM83BQ5T0W9 1011 aa15□□□□□ -0.01
TRIM28-212ENST00000597995 SH3RF1Q7Z6J0 888 aa15□□□□□ -0.01
TRIM28-212ENST00000597995 MSL3Q8N5Y2 521 aaKnown RBP15□□□□□ -0.01
TRIM28-212ENST00000597995 YTHDC1Q96MU7 727 aaKnown RBP15□□□□□ -0.01
TRIM28-212ENST00000597995 FAM161BQ96MY7 647 aa15□□□□□ -0.01
TRIM28-212ENST00000597995 TSEN34Q9BSV6 310 aaKnown RBP15□□□□□ -0.01
TRIM28-212ENST00000597995 GNL3Q9BVP2 549 aaKnown RBP eCLIP15□□□□□ -0.01
TRIM28-212ENST00000597995 PUS7LQ9H0K6 701 aaKnown RBP15□□□□□ -0.01
TRIM28-212ENST00000597995 SEMA6BQ9H3T3 888 aa15□□□□□ -0.01
TRIM28-212ENST00000597995 DCTPP1Q9H773 170 aa15□□□□□ -0.01
TRIM28-212ENST00000597995 COL11A1P12107 1806 aaPredicted RBP15□□□□□ -0.01
TRIM28-212ENST00000597995 CHGBP05060 677 aa14.99□□□□□ -0.01
TRIM28-212ENST00000597995 CLTBP09497 229 aa14.99□□□□□ -0.01
TRIM28-212ENST00000597995 GIMAP6Q6P9H5 292 aa14.99□□□□□ -0.01
TRIM28-212ENST00000597995 STRBPQ96SI9 672 aaKnown RBP14.99□□□□□ -0.01
TRIM28-212ENST00000597995 TEX13BQ9BXU2 312 aa14.99□□□□□ -0.01
TRIM28-212ENST00000597995 LRRCC1Q9C099 1032 aa14.99□□□□□ -0.01
TRIM28-212ENST00000597995 NYAP2Q9P242 653 aa14.99□□□□□ -0.01
TRIM28-212ENST00000597995 CNPY2Q9Y2B0 182 aa14.99□□□□□ -0.01
TRIM28-212ENST00000597995 MYH7P12883 1935 aa14.99□□□□□ -0.01
TRIM28-212ENST00000597995 PLXNA1Q9UIW2 1896 aa14.98□□□□□ -0.01
TRIM28-212ENST00000597995 KIAA0355O15063 1070 aa14.98□□□□□ -0.01
TRIM28-212ENST00000597995 PGK1P00558 417 aa14.98□□□□□ -0.01
TRIM28-212ENST00000597995 TAL1P17542 331 aaPredicted RBP14.98□□□□□ -0.01
TRIM28-212ENST00000597995 TOX2Q96NM4 488 aa14.98□□□□□ -0.01
TRIM28-212ENST00000597995 CDX2Q99626 313 aaPredicted RBP14.98□□□□□ -0.01
TRIM28-212ENST00000597995 SLF1Q9BQI6 1058 aa14.98□□□□□ -0.01
TRIM28-212ENST00000597995 COL25A1Q9BXS0 654 aaPredicted RBP14.98□□□□□ -0.01
TRIM28-212ENST00000597995 SYNGAP1Q96PV0 1343 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 DNAJC25-GNG10A0A024R161 153 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 A0A1W2PQ45 241 aaPredicted RBP14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms