RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 PSMD1Q99460 953 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 STIM2Q9P246 746 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 LAMC1P11047 1609 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 NDUFA10O95299 355 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 CYP21A2P08686 494 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 PLCD1P51178 756 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 CUL3Q13618 768 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 LAMB3Q13751 1172 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 TTF1Q15361 905 aaPredicted RBP13.64□□□□□ -0.23
LIG1-207ENST00000594759 DDX27Q96GQ7 796 aaKnown RBP13.64□□□□□ -0.23
LIG1-207ENST00000594759 A1CFQ9NQ94 594 aaKnown RBP13.64□□□□□ -0.23
LIG1-207ENST00000594759 CNKSR2Q8WXI2 1034 aa13.63□□□□□ -0.23
LIG1-207ENST00000594759 PSMA7O14818 248 aa13.63□□□□□ -0.23
LIG1-207ENST00000594759 ZFYP08048 801 aaPredicted RBP13.63□□□□□ -0.23
LIG1-207ENST00000594759 CCNHP51946 323 aaPredicted RBP13.63□□□□□ -0.23
LIG1-207ENST00000594759 ZNF790Q6PG37 636 aa13.63□□□□□ -0.23
LIG1-207ENST00000594759 TRIML1Q8N9V2 468 aa13.63□□□□□ -0.23
LIG1-207ENST00000594759 CUL5Q93034 780 aa13.63□□□□□ -0.23
LIG1-207ENST00000594759 NOD2Q9HC29 1040 aa13.63□□□□□ -0.23
LIG1-207ENST00000594759 TBC1D2BQ9UPU7 963 aa13.63□□□□□ -0.23
LIG1-207ENST00000594759 RAD21O60216 631 aa13.63□□□□□ -0.23
LIG1-207ENST00000594759 HEXIM1O94992 359 aaKnown RBP13.63□□□□□ -0.23
LIG1-207ENST00000594759 MAGEA1P43355 309 aa13.63□□□□□ -0.23
LIG1-207ENST00000594759 LINS1Q8NG48 757 aa13.63□□□□□ -0.23
LIG1-207ENST00000594759 IFIH1Q9BYX4 1025 aaKnown RBP13.63□□□□□ -0.23
LIG1-207ENST00000594759 KIDINS220Q9ULH0 1771 aa13.63□□□□□ -0.23
LIG1-207ENST00000594759 PDHA1P08559 390 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 MDH1P40925 334 aaKnown RBP13.62□□□□□ -0.23
LIG1-207ENST00000594759 MTMR3Q13615 1198 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 RAD9BQ6WBX8 426 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 MSL3Q8N5Y2 521 aaKnown RBP13.62□□□□□ -0.23
LIG1-207ENST00000594759 P3H4Q92791 437 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 CDK5RAP3Q96JB5 506 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.62□□□□□ -0.23
LIG1-207ENST00000594759 OSBPL1AQ9BXW6 950 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 KCNK9Q9NPC2 374 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 NFU1Q9UMS0 254 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 USH1CQ9Y6N9 552 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 GLI2P10070 1586 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 USP6P35125 1406 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 ZBTB43O43298 467 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 EVI5O60447 810 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 ERCC5P28715 1186 aaPredicted RBP13.62□□□□□ -0.23
LIG1-207ENST00000594759 CXCR5P32302 372 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 HOOK3Q86VS8 718 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 GPIHBP1Q8IV16 184 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 ENGASEQ8NFI3 743 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 STAMQ92783 540 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 ZNF274Q96GC6 653 aaPredicted RBP13.62□□□□□ -0.23
LIG1-207ENST00000594759 ZNF496Q96IT1 587 aaPredicted RBP13.62□□□□□ -0.23
LIG1-207ENST00000594759 IFIT3O14879 490 aaKnown RBP13.62□□□□□ -0.23
LIG1-207ENST00000594759 PDIA3P30101 505 aaKnown RBP13.62□□□□□ -0.23
LIG1-207ENST00000594759 HDLBPQ00341 1268 aaKnown RBP13.62□□□□□ -0.23
LIG1-207ENST00000594759 KRT40Q6A162 431 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 NBPF10Q6P3W6 841 aaKnown RBP13.62□□□□□ -0.23
LIG1-207ENST00000594759 NOX5Q96PH1 765 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 PAPOLBQ9NRJ5 636 aaKnown RBP13.62□□□□□ -0.23
LIG1-207ENST00000594759 GJB4Q9NTQ9 266 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 CWC25Q9NXE8 425 aaPredicted RBP13.62□□□□□ -0.23
LIG1-207ENST00000594759 SCOCQ9UIL1 159 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 KRT14P02533 472 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 KIAA0753Q2KHM9 967 aa13.62□□□□□ -0.23
LIG1-207ENST00000594759 CCDC97Q96F63 343 aaPredicted RBP13.62□□□□□ -0.23
LIG1-207ENST00000594759 ADGRB3O60242 1522 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 ZPR1O75312 459 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 FAM107AO95990 144 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 MYBL2P10244 700 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 EIF4A1P60842 406 aaKnown RBP13.61□□□□□ -0.23
LIG1-207ENST00000594759 IFIT5Q13325 482 aaKnown RBP13.61□□□□□ -0.23
LIG1-207ENST00000594759 DYNC1I2Q13409 638 aaKnown RBP13.61□□□□□ -0.23
LIG1-207ENST00000594759 MAP7Q14244 749 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 KCNV2Q8TDN2 545 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 HOMER3Q9NSC5 361 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 MAN1B1Q9UKM7 699 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 TRIM75PA6NK02 468 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 TEX33O43247 280 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 COBLO75128 1261 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 ALDH1L1O75891 902 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 PAK1Q13153 545 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 PARD3BQ8TEW8 1205 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 RAB3IPQ96QF0 476 aaPredicted RBP13.61□□□□□ -0.23
LIG1-207ENST00000594759 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.61□□□□□ -0.234e-7■■■■□ 19.6
LIG1-207ENST00000594759 TAOK3Q9H2K8 898 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 BTG4Q9NY30 223 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 ABCF2Q9UG63 623 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 NOVA2Q9UNW9 492 aaKnown RBP13.61□□□□□ -0.23
LIG1-207ENST00000594759 TRPC6Q9Y210 931 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 INO80Q9ULG1 1556 aaPredicted RBP13.61□□□□□ -0.23
LIG1-207ENST00000594759 E7EWF7 191 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 C21orf2O43822 256 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 ANP32DO95626 131 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 PAPOLAP51003 745 aaKnown RBP13.61□□□□□ -0.23
LIG1-207ENST00000594759 TMEM67Q5HYA8 995 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 FNBP4Q8N3X1 1017 aaPredicted RBP13.61□□□□□ -0.23
LIG1-207ENST00000594759 PHKBQ93100 1093 aa13.61□□□□□ -0.23
LIG1-207ENST00000594759 DDX21Q9NR30 783 aaKnown RBP eCLIP13.61□□□□□ -0.23
LIG1-207ENST00000594759 PRAMEF22A3QJZ6 481 aa13.6□□□□□ -0.23
LIG1-207ENST00000594759 A1BGP04217 495 aa13.6□□□□□ -0.23
LIG1-207ENST00000594759 IL2RBP14784 551 aa13.6□□□□□ -0.23
LIG1-207ENST00000594759 AARSP49588 968 aaKnown RBP eCLIP13.6□□□□□ -0.232e-6■■■■□ 24
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms