RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 MAML3Q96JK9 1138 aa14.14□□□□□ -0.15
CLIP3-204ENST00000590559 SH2D4AQ9H788 454 aa14.14□□□□□ -0.15
CLIP3-204ENST00000590559 KANSL2Q9H9L4 492 aa14.14□□□□□ -0.15
CLIP3-204ENST00000590559 MTMR10Q9NXD2 777 aa14.14□□□□□ -0.15
CLIP3-204ENST00000590559 POTEB2H3BUK9 544 aa14.13□□□□□ -0.15
CLIP3-204ENST00000590559 SLC25A27O95847 323 aa14.13□□□□□ -0.15
CLIP3-204ENST00000590559 GJC2Q5T442 439 aaPredicted RBP14.13□□□□□ -0.15
CLIP3-204ENST00000590559 C20orf194Q5TEA3 1177 aa14.13□□□□□ -0.15
CLIP3-204ENST00000590559 RIOX2Q8IUF8 465 aa14.13□□□□□ -0.15
CLIP3-204ENST00000590559 ARRDC4Q8NCT1 418 aa14.13□□□□□ -0.15
CLIP3-204ENST00000590559 LRRCC1Q9C099 1032 aa14.13□□□□□ -0.15
CLIP3-204ENST00000590559 CHMP4BQ9H444 224 aaKnown RBP14.13□□□□□ -0.15
CLIP3-204ENST00000590559 ZNF214Q9UL59 606 aaPredicted RBP14.13□□□□□ -0.15
CLIP3-204ENST00000590559 SLC4A4Q9Y6R1 1079 aa14.13□□□□□ -0.15
CLIP3-204ENST00000590559 ROBO3Q96MS0 1386 aa14.12□□□□□ -0.15
CLIP3-204ENST00000590559 VWA5AO00534 786 aa14.12□□□□□ -0.15
CLIP3-204ENST00000590559 ATN1P54259 1190 aaPredicted RBP14.12□□□□□ -0.15
CLIP3-204ENST00000590559 RTP1P59025 263 aa14.12□□□□□ -0.15
CLIP3-204ENST00000590559 ZNF792Q3KQV3 632 aa14.12□□□□□ -0.15
CLIP3-204ENST00000590559 SBK1Q52WX2 424 aa14.12□□□□□ -0.15
CLIP3-204ENST00000590559 PRAMEF19Q5SWL8 479 aa14.12□□□□□ -0.15
CLIP3-204ENST00000590559 C1orf53Q5VUE5 145 aa14.12□□□□□ -0.15
CLIP3-204ENST00000590559 FAM109BQ6ICB4 259 aaPredicted RBP14.12□□□□□ -0.15
CLIP3-204ENST00000590559 SLC39A5Q6ZMH5 540 aa14.12□□□□□ -0.15
CLIP3-204ENST00000590559 NCAPG2Q86XI2 1143 aa14.12□□□□□ -0.15
CLIP3-204ENST00000590559 SLC17A8Q8NDX2 589 aa14.12□□□□□ -0.15
CLIP3-204ENST00000590559 STRBPQ96SI9 672 aaKnown RBP14.12□□□□□ -0.15
CLIP3-204ENST00000590559 FBXO28Q9NVF7 368 aa14.12□□□□□ -0.15
CLIP3-204ENST00000590559 NRBP1Q9UHY1 535 aa14.12□□□□□ -0.15
CLIP3-204ENST00000590559 RCAN3Q9UKA8 241 aa14.12□□□□□ -0.15
CLIP3-204ENST00000590559 PPP1R9AQ9ULJ8 1098 aa14.12□□□□□ -0.15
CLIP3-204ENST00000590559 STXBP5LQ9Y2K9 1186 aa14.12□□□□□ -0.15
CLIP3-204ENST00000590559 CUL9Q8IWT3 2517 aa14.11□□□□□ -0.15
CLIP3-204ENST00000590559 GSG1L2A8MUP6 293 aa14.11□□□□□ -0.15
CLIP3-204ENST00000590559 SMARCA5O60264 1052 aaPredicted RBP14.11□□□□□ -0.15
CLIP3-204ENST00000590559 FCER1AP12319 257 aa14.11□□□□□ -0.15
CLIP3-204ENST00000590559 RASA1P20936 1047 aa14.11□□□□□ -0.15
CLIP3-204ENST00000590559 PLS1Q14651 629 aa14.11□□□□□ -0.15
CLIP3-204ENST00000590559 LRRC41Q15345 812 aa14.11□□□□□ -0.15
CLIP3-204ENST00000590559 ANO1Q5XXA6 986 aa14.11□□□□□ -0.15
CLIP3-204ENST00000590559 ZSCAN25Q6NSZ9 544 aa14.11□□□□□ -0.15
CLIP3-204ENST00000590559 GIMAP6Q6P9H5 292 aa14.11□□□□□ -0.15
CLIP3-204ENST00000590559 SLC5A4Q9NY91 659 aa14.11□□□□□ -0.15
CLIP3-204ENST00000590559 ARPP21Q9UBL0 812 aaPredicted RBP14.11□□□□□ -0.15
CLIP3-204ENST00000590559 DIS3Q9Y2L1 958 aaKnown RBP14.11□□□□□ -0.15
CLIP3-204ENST00000590559 IGKV6D-41A0A0C4DH26 115 aa14.1□□□□□ -0.15
CLIP3-204ENST00000590559 AMOTL1Q8IY63 956 aa14.1□□□□□ -0.15
CLIP3-204ENST00000590559 KBTBD3Q8NAB2 608 aa14.1□□□□□ -0.15
CLIP3-204ENST00000590559 OSBP2Q969R2 916 aa14.1□□□□□ -0.15
CLIP3-204ENST00000590559 TINF2Q9BSI4 451 aa14.1□□□□□ -0.15
CLIP3-204ENST00000590559 GOPCQ9HD26 462 aa14.1□□□□□ -0.15
CLIP3-204ENST00000590559 ECHDC1Q9NTX5 307 aa14.1□□□□□ -0.15
CLIP3-204ENST00000590559 CHD9Q3L8U1 2897 aa14.1□□□□□ -0.15
CLIP3-204ENST00000590559 KBTBD13C9JR72 458 aa14.09□□□□□ -0.15
CLIP3-204ENST00000590559 ZNF865P0CJ78 1059 aaPredicted RBP14.09□□□□□ -0.15
CLIP3-204ENST00000590559 STAT3P40763 770 aa14.09□□□□□ -0.15
CLIP3-204ENST00000590559 FAM47AQ5JRC9 791 aa14.09□□□□□ -0.15
CLIP3-204ENST00000590559 FAM83BQ5T0W9 1011 aa14.09□□□□□ -0.15
CLIP3-204ENST00000590559 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.09□□□□□ -0.15
CLIP3-204ENST00000590559 DCTPP1Q9H773 170 aa14.09□□□□□ -0.15
CLIP3-204ENST00000590559 NYAP2Q9P242 653 aa14.09□□□□□ -0.15
CLIP3-204ENST00000590559 PHF24Q9UPV7 400 aa14.09□□□□□ -0.15
CLIP3-204ENST00000590559 MCM3APO60318 1980 aa14.09□□□□□ -0.15
CLIP3-204ENST00000590559 DNAJC25-GNG10A0A024R161 153 aa14.08□□□□□ -0.16
CLIP3-204ENST00000590559 ATP2A1O14983 1001 aa14.08□□□□□ -0.16
CLIP3-204ENST00000590559 PGK2P07205 417 aa14.08□□□□□ -0.16
CLIP3-204ENST00000590559 TAL1P17542 331 aaPredicted RBP14.08□□□□□ -0.16
CLIP3-204ENST00000590559 ADCYAP1R1P41586 468 aa14.08□□□□□ -0.16
CLIP3-204ENST00000590559 MKL1Q969V6 931 aa14.08□□□□□ -0.16
CLIP3-204ENST00000590559 DDRGK1Q96HY6 314 aa14.08□□□□□ -0.16
CLIP3-204ENST00000590559 GUCD1Q96NT3 240 aa14.08□□□□□ -0.16
CLIP3-204ENST00000590559 MMP19Q99542 508 aa14.08□□□□□ -0.16
CLIP3-204ENST00000590559 LBHD1Q9BQE6 289 aaPredicted RBP14.08□□□□□ -0.16
CLIP3-204ENST00000590559 BCL11AQ9H165 835 aa14.08□□□□□ -0.16
CLIP3-204ENST00000590559 EPB41L4AQ9HCS5 686 aaPredicted RBP14.08□□□□□ -0.16
CLIP3-204ENST00000590559 PDLIM7Q9NR12 457 aa14.08□□□□□ -0.16
CLIP3-204ENST00000590559 ATP11BQ9Y2G3 1177 aa14.08□□□□□ -0.16
CLIP3-204ENST00000590559 TRIM43BA6NCK2 446 aa14.07□□□□□ -0.16
CLIP3-204ENST00000590559 DLL1O00548 723 aa14.07□□□□□ -0.16
CLIP3-204ENST00000590559 COPB2P35606 906 aa14.07□□□□□ -0.16
CLIP3-204ENST00000590559 TRIM60Q495X7 471 aa14.07□□□□□ -0.16
CLIP3-204ENST00000590559 SH3RF1Q7Z6J0 888 aa14.07□□□□□ -0.16
CLIP3-204ENST00000590559 APPBP2Q92624 585 aa14.07□□□□□ -0.16
CLIP3-204ENST00000590559 TRIM43Q96BQ3 446 aaPredicted RBP14.07□□□□□ -0.16
CLIP3-204ENST00000590559 RIPK3Q9Y572 518 aa14.07□□□□□ -0.16
CLIP3-204ENST00000590559 MUC3AQ02505 3323 aa14.07□□□□□ -0.16
CLIP3-204ENST00000590559 F5H6K3 240 aa14.06□□□□□ -0.16
CLIP3-204ENST00000590559 RNF113AO15541 343 aaKnown RBP14.06□□□□□ -0.16
CLIP3-204ENST00000590559 ADAMTS4O75173 837 aa14.06□□□□□ -0.16
CLIP3-204ENST00000590559 ITGB8P26012 769 aa14.06□□□□□ -0.16
CLIP3-204ENST00000590559 KLRC3Q07444 240 aa14.06□□□□□ -0.16
CLIP3-204ENST00000590559 KCTD2Q14681 263 aa14.06□□□□□ -0.16
CLIP3-204ENST00000590559 SHHQ15465 462 aa14.06□□□□□ -0.16
CLIP3-204ENST00000590559 C9orf50Q5SZB4 431 aa14.06□□□□□ -0.16
CLIP3-204ENST00000590559 MAMDC4Q6UXC1 1216 aa14.06□□□□□ -0.16
CLIP3-204ENST00000590559 MSL3Q8N5Y2 521 aaKnown RBP14.06□□□□□ -0.16
CLIP3-204ENST00000590559 NUP88Q99567 741 aaPredicted RBP14.06□□□□□ -0.16
CLIP3-204ENST00000590559 SLF1Q9BQI6 1058 aa14.06□□□□□ -0.16
CLIP3-204ENST00000590559 PLIN4Q96Q06 1357 aa14.06□□□□□ -0.16
CLIP3-204ENST00000590559 REV3LO60673 3130 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms