RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 PLS1Q14651 629 aa14.27□□□□□ -0.13
LIG3-209ENST00000586435 TMEM132BQ14DG7 1078 aa14.27□□□□□ -0.13
LIG3-209ENST00000586435 SNX17Q15036 470 aa14.27□□□□□ -0.13
LIG3-209ENST00000586435 RIOX2Q8IUF8 465 aa14.27□□□□□ -0.13
LIG3-209ENST00000586435 LBHD1Q9BQE6 289 aaPredicted RBP14.27□□□□□ -0.13
LIG3-209ENST00000586435 LRRCC1Q9C099 1032 aa14.27□□□□□ -0.13
LIG3-209ENST00000586435 MTMR10Q9NXD2 777 aa14.27□□□□□ -0.13
LIG3-209ENST00000586435 STXBP5LQ9Y2K9 1186 aa14.27□□□□□ -0.13
LIG3-209ENST00000586435 SLC4A4Q9Y6R1 1079 aa14.27□□□□□ -0.13
LIG3-209ENST00000586435 DNAH12Q6ZR08 3092 aa14.26□□□□□ -0.13
LIG3-209ENST00000586435 CHGBP05060 677 aa14.26□□□□□ -0.13
LIG3-209ENST00000586435 EEF2P13639 858 aaKnown RBP14.26□□□□□ -0.13
LIG3-209ENST00000586435 COPB2P35606 906 aa14.26□□□□□ -0.13
LIG3-209ENST00000586435 ATN1P54259 1190 aaPredicted RBP14.26□□□□□ -0.13
LIG3-209ENST00000586435 GJC2Q5T442 439 aaPredicted RBP14.26□□□□□ -0.13
LIG3-209ENST00000586435 C1orf53Q5VUE5 145 aa14.26□□□□□ -0.13
LIG3-209ENST00000586435 CTR9Q6PD62 1173 aa14.26□□□□□ -0.13
LIG3-209ENST00000586435 Q7L0L9 218 aa14.26□□□□□ -0.13
LIG3-209ENST00000586435 PUS7LQ9H0K6 701 aaKnown RBP14.26□□□□□ -0.13
LIG3-209ENST00000586435 GOPCQ9HD26 462 aa14.26□□□□□ -0.13
LIG3-209ENST00000586435 PRKAG2Q9UGJ0 569 aa14.26□□□□□ -0.13
LIG3-209ENST00000586435 PPP1R9AQ9ULJ8 1098 aa14.26□□□□□ -0.13
LIG3-209ENST00000586435 DIS3Q9Y2L1 958 aaKnown RBP14.26□□□□□ -0.13
LIG3-209ENST00000586435 SBK1Q52WX2 424 aa14.25□□□□□ -0.13
LIG3-209ENST00000586435 FAM109BQ6ICB4 259 aaPredicted RBP14.25□□□□□ -0.13
LIG3-209ENST00000586435 GIMAP6Q6P9H5 292 aa14.25□□□□□ -0.13
LIG3-209ENST00000586435 SLC39A5Q6ZMH5 540 aa14.25□□□□□ -0.13
LIG3-209ENST00000586435 BCL11AQ9H165 835 aa14.25□□□□□ -0.13
LIG3-209ENST00000586435 RCAN3Q9UKA8 241 aa14.25□□□□□ -0.13
LIG3-209ENST00000586435 ZNF214Q9UL59 606 aaPredicted RBP14.25□□□□□ -0.13
LIG3-209ENST00000586435 VWA5AO00534 786 aa14.24□□□□□ -0.13
LIG3-209ENST00000586435 LRRC41Q15345 812 aa14.24□□□□□ -0.13
LIG3-209ENST00000586435 FAM47AQ5JRC9 791 aa14.24□□□□□ -0.13
LIG3-209ENST00000586435 REPS2Q8NFH8 660 aa14.24□□□□□ -0.13
LIG3-209ENST00000586435 MMP19Q99542 508 aa14.24□□□□□ -0.13
LIG3-209ENST00000586435 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.24□□□□□ -0.13
LIG3-209ENST00000586435 ECHDC1Q9NTX5 307 aa14.24□□□□□ -0.13
LIG3-209ENST00000586435 FBXO28Q9NVF7 368 aa14.24□□□□□ -0.13
LIG3-209ENST00000586435 ATP11BQ9Y2G3 1177 aa14.24□□□□□ -0.13
LIG3-209ENST00000586435 CUL9Q8IWT3 2517 aa14.23□□□□□ -0.13
LIG3-209ENST00000586435 POTEB2H3BUK9 544 aa14.23□□□□□ -0.13
LIG3-209ENST00000586435 STAT3P40763 770 aa14.23□□□□□ -0.13
LIG3-209ENST00000586435 KCTD2Q14681 263 aa14.23□□□□□ -0.13
LIG3-209ENST00000586435 ZNF792Q3KQV3 632 aa14.23□□□□□ -0.13
LIG3-209ENST00000586435 PRAMEF19Q5SWL8 479 aa14.23□□□□□ -0.13
LIG3-209ENST00000586435 FAM83BQ5T0W9 1011 aa14.23□□□□□ -0.13
LIG3-209ENST00000586435 ANO1Q5XXA6 986 aa14.23□□□□□ -0.13
LIG3-209ENST00000586435 KBTBD3Q8NAB2 608 aa14.23□□□□□ -0.13
LIG3-209ENST00000586435 STRBPQ96SI9 672 aaKnown RBP14.23□□□□□ -0.13
LIG3-209ENST00000586435 TINF2Q9BSI4 451 aa14.23□□□□□ -0.13
LIG3-209ENST00000586435 NYAP2Q9P242 653 aa14.23□□□□□ -0.13
LIG3-209ENST00000586435 PHF24Q9UPV7 400 aa14.23□□□□□ -0.13
LIG3-209ENST00000586435 MCM3APO60318 1980 aa14.22□□□□□ -0.13
LIG3-209ENST00000586435 GSG1L2A8MUP6 293 aa14.22□□□□□ -0.13
LIG3-209ENST00000586435 DLL1O00548 723 aa14.22□□□□□ -0.13
LIG3-209ENST00000586435 RARBP10826 455 aa14.22□□□□□ -0.13
LIG3-209ENST00000586435 RASA1P20936 1047 aa14.22□□□□□ -0.13
LIG3-209ENST00000586435 TRIM60Q495X7 471 aa14.22□□□□□ -0.13
LIG3-209ENST00000586435 SAMD1Q6SPF0 538 aaPredicted RBP14.22□□□□□ -0.13
LIG3-209ENST00000586435 MSL3Q8N5Y2 521 aaKnown RBP14.22□□□□□ -0.13
LIG3-209ENST00000586435 APPBP2Q92624 585 aa14.22□□□□□ -0.13
LIG3-209ENST00000586435 PDLIM7Q9NR12 457 aa14.22□□□□□ -0.13
LIG3-209ENST00000586435 ATP2A1O14983 1001 aa14.21□□□□□ -0.13
LIG3-209ENST00000586435 SMARCA5O60264 1052 aaPredicted RBP14.21□□□□□ -0.13
LIG3-209ENST00000586435 PGK2P07205 417 aa14.21□□□□□ -0.13
LIG3-209ENST00000586435 ZFYP08048 801 aaPredicted RBP14.21□□□□□ -0.13
LIG3-209ENST00000586435 AKR1A1P14550 325 aa14.21□□□□□ -0.13
LIG3-209ENST00000586435 ADCYAP1R1P41586 468 aa14.21□□□□□ -0.13
LIG3-209ENST00000586435 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.21□□□□□ -0.13
LIG3-209ENST00000586435 RNF180Q86T96 592 aa14.21□□□□□ -0.13
LIG3-209ENST00000586435 GPATCH3Q96I76 525 aa14.21□□□□□ -0.13
LIG3-209ENST00000586435 SLF1Q9BQI6 1058 aa14.21□□□□□ -0.13
LIG3-209ENST00000586435 TEX13BQ9BXU2 312 aa14.21□□□□□ -0.13
LIG3-209ENST00000586435 XPNPEP3Q9NQH7 507 aa14.21□□□□□ -0.13
LIG3-209ENST00000586435 SYNPO2Q9UMS6 1093 aa14.21□□□□□ -0.13
LIG3-209ENST00000586435 IGKV6D-41A0A0C4DH26 115 aa14.2□□□□□ -0.14
LIG3-209ENST00000586435 ZNF865P0CJ78 1059 aaPredicted RBP14.2□□□□□ -0.14
LIG3-209ENST00000586435 GNAT2P19087 354 aa14.2□□□□□ -0.14
LIG3-209ENST00000586435 C20orf194Q5TEA3 1177 aa14.2□□□□□ -0.14
LIG3-209ENST00000586435 OSBP2Q969R2 916 aa14.2□□□□□ -0.14
LIG3-209ENST00000586435 DCTPP1Q9H773 170 aa14.2□□□□□ -0.14
LIG3-209ENST00000586435 MKNK2Q9HBH9 465 aa14.2□□□□□ -0.14
LIG3-209ENST00000586435 ZNF287Q9HBT7 754 aa14.2□□□□□ -0.14
LIG3-209ENST00000586435 PRDM5Q9NQX1 630 aaPredicted RBP14.2□□□□□ -0.14
LIG3-209ENST00000586435 PLIN4Q96Q06 1357 aa14.2□□□□□ -0.14
LIG3-209ENST00000586435 SYNGAP1Q96PV0 1343 aa14.19□□□□□ -0.14
LIG3-209ENST00000586435 F5H6K3 240 aa14.19□□□□□ -0.14
LIG3-209ENST00000586435 RNF113AO15541 343 aaKnown RBP14.19□□□□□ -0.14
LIG3-209ENST00000586435 GPAA1O43292 621 aa14.19□□□□□ -0.14
LIG3-209ENST00000586435 RAD21O60216 631 aa14.19□□□□□ -0.14
LIG3-209ENST00000586435 NDUFB10O96000 172 aa14.19□□□□□ -0.14
LIG3-209ENST00000586435 MYCNP04198 464 aaPredicted RBP14.19□□□□□ -0.14
LIG3-209ENST00000586435 KLRC3Q07444 240 aa14.19□□□□□ -0.14
LIG3-209ENST00000586435 MAMDC4Q6UXC1 1216 aa14.19□□□□□ -0.14
LIG3-209ENST00000586435 PRPF38AQ8NAV1 312 aaKnown RBP14.19□□□□□ -0.14
LIG3-209ENST00000586435 FERMT2Q96AC1 680 aa14.19□□□□□ -0.14
LIG3-209ENST00000586435 GUCD1Q96NT3 240 aa14.19□□□□□ -0.14
LIG3-209ENST00000586435 EPB41L4AQ9HCS5 686 aaPredicted RBP14.19□□□□□ -0.14
LIG3-209ENST00000586435 CNPY2Q9Y2B0 182 aa14.19□□□□□ -0.14
LIG3-209ENST00000586435 DNAJC25-GNG10A0A024R161 153 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms