RNA–Protein interactions for RNA: ENST00000582114.5

CDK5RAP3-223, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 2

Gene CDK5RAP3, Length 647 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-223	ENST00000582114	NUP88	Q99567	741 aa	Predicted RBP	13.95	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.95	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	MROH8	Q9H579	483 aa		13.95	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	KANSL2	Q9H9L4	492 aa		13.95	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.95	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	GSG1L2	A8MUP6	293 aa		13.94	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	IGHA2	P01877	340 aa		13.94	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	PGK2	P07205	417 aa		13.94	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	FCER1A	P12319	257 aa		13.94	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114		Q7L0L9	218 aa		13.94	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	TDH	Q8IZJ6	230 aa		13.94	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	KBTBD3	Q8NAB2	608 aa		13.94	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	MMP19	Q99542	508 aa		13.94	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	MKNK2	Q9HBH9	465 aa		13.94	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	GOPC	Q9HD26	462 aa		13.94	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114		M0R2C6	588 aa		13.93	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	DNM1L	O00429	736 aa		13.93	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	RNF113A	O15541	343 aa	Known RBP	13.93	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	APP	P05067	770 aa		13.93	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	RASA1	P20936	1047 aa		13.93	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	SLC4A3	P48751	1232 aa		13.93	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	RTP1	P59025	263 aa		13.93	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	APPBP2	Q92624	585 aa		13.93	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	MAML3	Q96JK9	1138 aa		13.93	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	DCTPP1	Q9H773	170 aa		13.93	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	13.93	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	SLC5A4	Q9NY91	659 aa		13.93	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	ATP11B	Q9Y2G3	1177 aa		13.93	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	COL6A3	P12111	3177 aa		13.92	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	KBTBD13	C9JR72	458 aa		13.92	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	VWA5A	O00534	786 aa		13.92	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	SEPT4	O43236	478 aa		13.92	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	GPAA1	O43292	621 aa		13.92	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	PRDM1	O75626	825 aa		13.92	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	SLC25A27	O95847	323 aa		13.92	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	TDO2	P48775	406 aa		13.92	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	FAM47A	Q5JRC9	791 aa		13.92	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	ABRA	Q8N0Z2	381 aa		13.92	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	PPP1R9A	Q9ULJ8	1098 aa		13.92	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.92	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	STAT3	P40763	770 aa		13.91	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	SBK1	Q52WX2	424 aa		13.91	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	RIOX2	Q8IUF8	465 aa		13.91	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	DEFB123	Q8N688	67 aa		13.91	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	ARRDC4	Q8NCT1	418 aa		13.91	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.91	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	FERMT2	Q96AC1	680 aa		13.91	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	CHMP4C	Q96CF2	233 aa		13.91	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	SEC62	Q99442	399 aa	Known RBP	13.91	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	LBHD1	Q9BQE6	289 aa	Predicted RBP	13.91	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	PRDM5	Q9NQX1	630 aa	Predicted RBP	13.91	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	CLIP2	Q9UDT6	1046 aa		13.91	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	ZNF214	Q9UL59	606 aa	Predicted RBP	13.91	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	ADAMTS5	Q9UNA0	930 aa		13.91	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	GREB1L	Q9C091	1923 aa	Predicted RBP	13.91	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	NDUFB10	O96000	172 aa		13.9	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	TAL1	P17542	331 aa	Predicted RBP	13.9	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	ADCYAP1R1	P41586	468 aa		13.9	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	KCTD2	Q14681	263 aa		13.9	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	LRRC41	Q15345	812 aa		13.9	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	LRIT3	Q3SXY7	679 aa		13.9	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	SLC39A5	Q6ZMH5	540 aa		13.9	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	LRRC47	Q8N1G4	583 aa	Known RBP	13.9	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	REPS2	Q8NFH8	660 aa		13.9	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	LENG1	Q96BZ8	264 aa	Predicted RBP	13.9	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	SLF1	Q9BQI6	1058 aa		13.9	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	PCDHB15	Q9Y5E8	787 aa		13.9	□□□□□ -0.18
CDK5RAP3-223	ENST00000582114	PLXNA1	Q9UIW2	1896 aa		13.89	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	ROBO3	Q96MS0	1386 aa		13.89	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114		F5H6K3	240 aa		13.89	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	ZFY	P08048	801 aa	Predicted RBP	13.89	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	KLRC3	Q07444	240 aa		13.89	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	TRIM60	Q495X7	471 aa		13.89	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	SNRNP48	Q6IEG0	339 aa	Known RBP	13.89	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	GIMAP6	Q6P9H5	292 aa		13.89	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.89	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	CPXCR1	Q8N123	301 aa		13.89	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	SLC17A8	Q8NDX2	589 aa		13.89	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	KIFC2	Q96AC6	838 aa		13.89	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	CEP95	Q96GE4	821 aa		13.89	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	NYAP2	Q9P242	653 aa		13.89	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	PRKAG2	Q9UGJ0	569 aa		13.89	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	ISY1	Q9ULR0	285 aa	Known RBP	13.89	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	MYH4	Q9Y623	1939 aa		13.88	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	PATL2	C9JE40	543 aa	Known RBP	13.88	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	PGK1	P00558	417 aa		13.88	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	GNAT2	P19087	354 aa		13.88	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	ZNF792	Q3KQV3	632 aa		13.88	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	IFNL3	Q8IZI9	196 aa		13.88	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	TINF2	Q9BSI4	451 aa		13.88	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	FSD1	Q9BTV5	496 aa		13.88	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	XPNPEP3	Q9NQH7	507 aa		13.88	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	RIPK3	Q9Y572	518 aa		13.88	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.88	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	SMCHD1	A6NHR9	2005 aa		13.88	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	LAMA2	P24043	3122 aa	Known RBP	13.87	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	IGKV6D-41	A0A0C4DH26	115 aa		13.87	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	RARB	P10826	455 aa		13.87	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	CCDC129	Q6ZRS4	1044 aa		13.87	□□□□□ -0.19
CDK5RAP3-223	ENST00000582114	SH3RF1	Q7Z6J0	888 aa		13.87	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms