RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 GDF11O95390 407 aa12.15□□□□□ -0.46
SS18-217ENST00000580958 EGFRP00533 1210 aa12.15□□□□□ -0.46
SS18-217ENST00000580958 GOLGA8HP0CJ92 632 aa12.15□□□□□ -0.46
SS18-217ENST00000580958 LMNB1P20700 586 aa12.15□□□□□ -0.46
SS18-217ENST00000580958 CEBPZQ03701 1054 aaKnown RBP12.15□□□□□ -0.46
SS18-217ENST00000580958 RRP1BQ14684 758 aaKnown RBP12.15□□□□□ -0.46
SS18-217ENST00000580958 SEPT2Q15019 361 aa12.15□□□□□ -0.46
SS18-217ENST00000580958 SAFBQ15424 915 aaKnown RBP eCLIP12.15□□□□□ -0.46
SS18-217ENST00000580958 ABCB5Q2M3G0 1257 aa12.15□□□□□ -0.46
SS18-217ENST00000580958 TBC1D10BQ4KMP7 808 aaPredicted RBP12.15□□□□□ -0.46
SS18-217ENST00000580958 PPP4R3BQ5MIZ7 849 aa12.15□□□□□ -0.46
SS18-217ENST00000580958 MYSM1Q5VVJ2 828 aa12.15□□□□□ -0.46
SS18-217ENST00000580958 ATL3Q6DD88 541 aa12.15□□□□□ -0.46
SS18-217ENST00000580958 USP17L2Q6R6M4 530 aa12.15□□□□□ -0.46
SS18-217ENST00000580958 SAMD7Q7Z3H4 446 aa12.15□□□□□ -0.46
SS18-217ENST00000580958 FAM83AQ86UY5 434 aa12.15□□□□□ -0.46
SS18-217ENST00000580958 CDAN1Q8IWY9 1227 aa12.15□□□□□ -0.46
SS18-217ENST00000580958 LZTS2Q9BRK4 669 aa12.15□□□□□ -0.46
SS18-217ENST00000580958 SYT17Q9BSW7 474 aa12.15□□□□□ -0.46
SS18-217ENST00000580958 TMEM39BQ9GZU3 492 aa12.15□□□□□ -0.46
SS18-217ENST00000580958 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.15□□□□□ -0.46
SS18-217ENST00000580958 GOLGB1Q14789 3259 aaKnown RBP12.15□□□□□ -0.46
SS18-217ENST00000580958 KLRF2D3W0D1 207 aa12.14□□□□□ -0.47
SS18-217ENST00000580958 SCG2P13521 617 aa12.14□□□□□ -0.47
SS18-217ENST00000580958 XBP1P17861 261 aa12.14□□□□□ -0.47
SS18-217ENST00000580958 U2AF2P26368 475 aaKnown RBP eCLIP12.14□□□□□ -0.472e-12■■□□□ 13.1
SS18-217ENST00000580958 TNNI2P48788 182 aa12.14□□□□□ -0.47
SS18-217ENST00000580958 PFKFB3Q16875 520 aaPredicted RBP12.14□□□□□ -0.47
SS18-217ENST00000580958 TMEM179Q6ZVK1 233 aa12.14□□□□□ -0.47
SS18-217ENST00000580958 DIS3L2Q8IYB7 885 aaKnown RBP12.14□□□□□ -0.47
SS18-217ENST00000580958 CPVLQ9H3G5 476 aa12.14□□□□□ -0.47
SS18-217ENST00000580958 PGAP2Q9UHJ9 254 aa12.14□□□□□ -0.47
SS18-217ENST00000580958 HERC5Q9UII4 1024 aaKnown RBP12.14□□□□□ -0.47
SS18-217ENST00000580958 RCOR1Q9UKL0 485 aa12.14□□□□□ -0.47
SS18-217ENST00000580958 FRMPD2Q68DX3 1309 aaPredicted RBP12.13□□□□□ -0.47
SS18-217ENST00000580958 DOCK1Q14185 1865 aa12.13□□□□□ -0.47
SS18-217ENST00000580958 BTBD18B2RXH4 712 aa12.13□□□□□ -0.47
SS18-217ENST00000580958 CYTH3O43739 400 aa12.13□□□□□ -0.47
SS18-217ENST00000580958 PDHBP11177 359 aa12.13□□□□□ -0.47
SS18-217ENST00000580958 EEF2P13639 858 aaKnown RBP12.13□□□□□ -0.47
SS18-217ENST00000580958 VEGFAP15692 232 aaPredicted RBP12.13□□□□□ -0.47
SS18-217ENST00000580958 JAG1P78504 1218 aa12.13□□□□□ -0.47
SS18-217ENST00000580958 STK38Q15208 465 aa12.13□□□□□ -0.47
SS18-217ENST00000580958 KIF4BQ2VIQ3 1234 aa12.13□□□□□ -0.47
SS18-217ENST00000580958 ASPRV1Q53RT3 343 aa12.13□□□□□ -0.47
SS18-217ENST00000580958 OXER1Q8TDS5 423 aa12.13□□□□□ -0.47
SS18-217ENST00000580958 PGBD1Q96JS3 809 aa12.13□□□□□ -0.47
SS18-217ENST00000580958 PHF20Q9BVI0 1012 aa12.13□□□□□ -0.47
SS18-217ENST00000580958 SPZ1Q9BXG8 430 aa12.13□□□□□ -0.47
SS18-217ENST00000580958 KANSL2Q9H9L4 492 aa12.13□□□□□ -0.47
SS18-217ENST00000580958 RTEL1Q9NZ71 1219 aa12.13□□□□□ -0.47
SS18-217ENST00000580958 TMEM63CQ9P1W3 806 aa12.13□□□□□ -0.47
SS18-217ENST00000580958 NYAP2Q9P242 653 aa12.13□□□□□ -0.47
SS18-217ENST00000580958 SCAF8Q9UPN6 1271 aaKnown RBP12.13□□□□□ -0.47
SS18-217ENST00000580958 CLIC4Q9Y696 253 aa12.13□□□□□ -0.47
SS18-217ENST00000580958 ASTN2O75129 1339 aaPredicted RBP12.12□□□□□ -0.47
SS18-217ENST00000580958 H7C1D1 291 aa12.12□□□□□ -0.47
SS18-217ENST00000580958 GH2P01242 217 aa12.12□□□□□ -0.47
SS18-217ENST00000580958 SNHG28P0DPA3 235 aa12.12□□□□□ -0.47
SS18-217ENST00000580958 YBX3P16989 372 aaKnown RBP eCLIP12.12□□□□□ -0.47
SS18-217ENST00000580958 KRT2P35908 639 aa12.12□□□□□ -0.47
SS18-217ENST00000580958 ICA1Q05084 483 aa12.12□□□□□ -0.47
SS18-217ENST00000580958 RASA3Q14644 834 aa12.12□□□□□ -0.47
SS18-217ENST00000580958 CCDC96Q2M329 555 aa12.12□□□□□ -0.47
SS18-217ENST00000580958 ANO1Q5XXA6 986 aa12.12□□□□□ -0.47
SS18-217ENST00000580958 NOSTRINQ8IVI9 506 aa12.12□□□□□ -0.47
SS18-217ENST00000580958 GPKOWQ92917 476 aaPredicted RBP eCLIP12.12□□□□□ -0.47
SS18-217ENST00000580958 MKL1Q969V6 931 aa12.12□□□□□ -0.47
SS18-217ENST00000580958 FOXP1Q9H334 677 aaPredicted RBP12.12□□□□□ -0.47
SS18-217ENST00000580958 CABP5Q9NP86 173 aa12.12□□□□□ -0.47
SS18-217ENST00000580958 GPCPD1Q9NPB8 672 aa12.12□□□□□ -0.47
SS18-217ENST00000580958 GOLGA6L4A6NEF3 574 aa12.11□□□□□ -0.47
SS18-217ENST00000580958 TBC1D12O60347 775 aa12.11□□□□□ -0.47
SS18-217ENST00000580958 YEATS4O95619 227 aa12.11□□□□□ -0.47
SS18-217ENST00000580958 SMARCA1P28370 1054 aa12.11□□□□□ -0.47
SS18-217ENST00000580958 NASPP49321 788 aaPredicted RBP12.11□□□□□ -0.47
SS18-217ENST00000580958 ZNF543Q08ER8 600 aa12.11□□□□□ -0.47
SS18-217ENST00000580958 NR5A1Q13285 461 aa12.11□□□□□ -0.47
SS18-217ENST00000580958 ZSCAN23Q3MJ62 389 aa12.11□□□□□ -0.47
SS18-217ENST00000580958 SLFN13Q68D06 897 aa12.11□□□□□ -0.47
SS18-217ENST00000580958 WWC2Q6AWC2 1192 aa12.11□□□□□ -0.47
SS18-217ENST00000580958 MIGA2Q7L4E1 593 aa12.11□□□□□ -0.47
SS18-217ENST00000580958 SIAH1Q8IUQ4 282 aa12.11□□□□□ -0.47
SS18-217ENST00000580958 SYAP1Q96A49 352 aaPredicted RBP12.11□□□□□ -0.47
SS18-217ENST00000580958 UBA5Q9GZZ9 404 aa12.11□□□□□ -0.47
SS18-217ENST00000580958 VAT1LQ9HCJ6 419 aa12.11□□□□□ -0.47
SS18-217ENST00000580958 POLR3EQ9NVU0 708 aa12.11□□□□□ -0.47
SS18-217ENST00000580958 GPRC5DQ9NZD1 345 aa12.11□□□□□ -0.47
SS18-217ENST00000580958 RNF181Q9P0P0 153 aa12.11□□□□□ -0.47
SS18-217ENST00000580958 HACL1Q9UJ83 578 aa12.11□□□□□ -0.47
SS18-217ENST00000580958 TTLL13PA6NNM8 815 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 LIG1P18858 919 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 DEKP35659 375 aaKnown RBP12.1□□□□□ -0.47
SS18-217ENST00000580958 VASPP50552 380 aaPredicted RBP12.1□□□□□ -0.47
SS18-217ENST00000580958 NLRP5P59047 1200 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 TNFAIP1Q13829 316 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 SF3A1Q15459 793 aaKnown RBP12.1□□□□□ -0.47
SS18-217ENST00000580958 NPY5RQ15761 445 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 TTBK2Q6IQ55 1244 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 MAMSTRQ6ZN01 415 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms