RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 PCDHB15Q9Y5E8 787 aa11.62□□□□□ -0.55
CIITA-207ENST00000571545 COL11A1P12107 1806 aaPredicted RBP11.61□□□□□ -0.55
CIITA-207ENST00000571545 RAD21O60216 631 aa11.61□□□□□ -0.55
CIITA-207ENST00000571545 PEX10O60683 326 aa11.61□□□□□ -0.55
CIITA-207ENST00000571545 FCER1AP12319 257 aa11.61□□□□□ -0.55
CIITA-207ENST00000571545 ERCC3P19447 782 aa11.61□□□□□ -0.55
CIITA-207ENST00000571545 ADORA2AP29274 412 aa11.61□□□□□ -0.55
CIITA-207ENST00000571545 EVX2Q03828 476 aa11.61□□□□□ -0.55
CIITA-207ENST00000571545 TRIM32Q13049 653 aa11.61□□□□□ -0.55
CIITA-207ENST00000571545 TSHZ3Q63HK5 1081 aa11.61□□□□□ -0.55
CIITA-207ENST00000571545 POTEEQ6S8J3 1075 aa11.61□□□□□ -0.55
CIITA-207ENST00000571545 NCAPG2Q86XI2 1143 aa11.61□□□□□ -0.55
CIITA-207ENST00000571545 EVI5LQ96CN4 794 aa11.61□□□□□ -0.55
CIITA-207ENST00000571545 ATG4CQ96DT6 458 aa11.61□□□□□ -0.55
CIITA-207ENST00000571545 PPP1R9AQ9ULJ8 1098 aa11.61□□□□□ -0.55
CIITA-207ENST00000571545 PLIN4Q96Q06 1357 aa11.61□□□□□ -0.55
CIITA-207ENST00000571545 ALPK3Q96L96 1907 aa11.6□□□□□ -0.55
CIITA-207ENST00000571545 CHGBP05060 677 aa11.6□□□□□ -0.55
CIITA-207ENST00000571545 RASA1P20936 1047 aa11.6□□□□□ -0.55
CIITA-207ENST00000571545 KCTD2Q14681 263 aa11.6□□□□□ -0.55
CIITA-207ENST00000571545 CCL14Q16627 93 aa11.6□□□□□ -0.55
CIITA-207ENST00000571545 ZMYM1Q5SVZ6 1142 aa11.6□□□□□ -0.55
CIITA-207ENST00000571545 ANKRD45Q5TZF3 282 aa11.6□□□□□ -0.55
CIITA-207ENST00000571545 CLEC10AQ8IUN9 316 aa11.6□□□□□ -0.55
CIITA-207ENST00000571545 SIAH1Q8IUQ4 282 aa11.6□□□□□ -0.55
CIITA-207ENST00000571545 IFNL3Q8IZI9 196 aa11.6□□□□□ -0.55
CIITA-207ENST00000571545 DDX20Q9UHI6 824 aaKnown RBP11.6□□□□□ -0.55
CIITA-207ENST00000571545 NRBP1Q9UHY1 535 aa11.6□□□□□ -0.55
CIITA-207ENST00000571545 ADAMTS5Q9UNA0 930 aa11.6□□□□□ -0.55
CIITA-207ENST00000571545 CTDP1Q9Y5B0 961 aaPredicted RBP11.6□□□□□ -0.55
CIITA-207ENST00000571545 M0R2C6 588 aa11.59□□□□□ -0.55
CIITA-207ENST00000571545 VWA5AO00534 786 aa11.59□□□□□ -0.55
CIITA-207ENST00000571545 TTLL1O95922 423 aa11.59□□□□□ -0.55
CIITA-207ENST00000571545 TSPY3P0CV98 308 aa11.59□□□□□ -0.55
CIITA-207ENST00000571545 TSPY8P0CW00 308 aa11.59□□□□□ -0.55
CIITA-207ENST00000571545 FDX1P10109 184 aa11.59□□□□□ -0.55
CIITA-207ENST00000571545 CCND3P30281 292 aaPredicted RBP11.59□□□□□ -0.55
CIITA-207ENST00000571545 RIOX2Q8IUF8 465 aa11.59□□□□□ -0.55
CIITA-207ENST00000571545 PRPF38AQ8NAV1 312 aaKnown RBP11.59□□□□□ -0.55
CIITA-207ENST00000571545 GMCL1P1Q8NEA9 526 aa11.59□□□□□ -0.55
CIITA-207ENST00000571545 DIS3LQ8TF46 1054 aaKnown RBP11.59□□□□□ -0.55
CIITA-207ENST00000571545 CRBNQ96SW2 442 aa11.59□□□□□ -0.55
CIITA-207ENST00000571545 SLF1Q9BQI6 1058 aa11.59□□□□□ -0.55
CIITA-207ENST00000571545 TEX13BQ9BXU2 312 aa11.59□□□□□ -0.55
CIITA-207ENST00000571545 EPB41L4AQ9HCS5 686 aaPredicted RBP11.59□□□□□ -0.55
CIITA-207ENST00000571545 STAP2Q9UGK3 403 aa11.59□□□□□ -0.55
CIITA-207ENST00000571545 DIS3Q9Y2L1 958 aaKnown RBP11.59□□□□□ -0.55
CIITA-207ENST00000571545 PLXNA1Q9UIW2 1896 aa11.59□□□□□ -0.55
CIITA-207ENST00000571545 TRIOBPQ9H2D6 2365 aa11.59□□□□□ -0.55
CIITA-207ENST00000571545 DNM1LO00429 736 aa11.58□□□□□ -0.56
CIITA-207ENST00000571545 CYBAP13498 195 aa11.58□□□□□ -0.56
CIITA-207ENST00000571545 CNGA1P29973 690 aa11.58□□□□□ -0.56
CIITA-207ENST00000571545 STAT3P40763 770 aa11.58□□□□□ -0.56
CIITA-207ENST00000571545 FXR1P51114 621 aaKnown RBP eCLIP11.58□□□□□ -0.56
CIITA-207ENST00000571545 MFAP1P55081 439 aaKnown RBP11.58□□□□□ -0.56
CIITA-207ENST00000571545 PPARAQ07869 468 aa11.58□□□□□ -0.56
CIITA-207ENST00000571545 TMEM132BQ14DG7 1078 aa11.58□□□□□ -0.56
CIITA-207ENST00000571545 KIAA1755Q5JYT7 1200 aa11.58□□□□□ -0.56
CIITA-207ENST00000571545 FAM83BQ5T0W9 1011 aa11.58□□□□□ -0.56
CIITA-207ENST00000571545 LHX8Q68G74 356 aa11.58□□□□□ -0.56
CIITA-207ENST00000571545 C7orf61Q8IZ16 206 aa11.58□□□□□ -0.56
CIITA-207ENST00000571545 ARRDC4Q8NCT1 418 aa11.58□□□□□ -0.56
CIITA-207ENST00000571545 NPLOC4Q8TAT6 608 aa11.58□□□□□ -0.56
CIITA-207ENST00000571545 MMP19Q99542 508 aa11.58□□□□□ -0.56
CIITA-207ENST00000571545 RWDD1Q9H446 243 aaPredicted RBP11.58□□□□□ -0.56
CIITA-207ENST00000571545 ZNFX1Q9P2E3 1918 aaKnown RBP11.58□□□□□ -0.56
CIITA-207ENST00000571545 SALL3Q9BXA9 1300 aa11.58□□□□□ -0.56
CIITA-207ENST00000571545 IGKV6D-41A0A0C4DH26 115 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 KBTBD13C9JR72 458 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 F5H6K3 240 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 ATP2A1O14983 1001 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 SEPT4O43236 478 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 ZBED4O75132 1171 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 NDUFB10O96000 172 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 COL6A1P12109 1028 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 OAZ1P54368 228 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 KLRC3Q07444 240 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 MSL3Q8N5Y2 521 aaKnown RBP11.57□□□□□ -0.56
CIITA-207ENST00000571545 NEDD1Q8NHV4 660 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 MKL1Q969V6 931 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 MAML3Q96JK9 1138 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.57□□□□□ -0.56
CIITA-207ENST00000571545 HELLSQ9NRZ9 838 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 MTMR4Q9NYA4 1195 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 FLRT1Q9NZU1 646 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 RBM27Q9P2N5 1060 aaKnown RBP11.57□□□□□ -0.56
CIITA-207ENST00000571545 CLIP2Q9UDT6 1046 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 FBXO40Q9UH90 709 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 FEM1BQ9UK73 627 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 ZNF214Q9UL59 606 aaPredicted RBP11.57□□□□□ -0.56
CIITA-207ENST00000571545 ZMYM6O95789 1325 aa11.57□□□□□ -0.56
CIITA-207ENST00000571545 TSPY2A6NKD2 308 aa11.56□□□□□ -0.56
CIITA-207ENST00000571545 IGHA2P01877 340 aa11.56□□□□□ -0.56
CIITA-207ENST00000571545 CYP2C19P33261 490 aa11.56□□□□□ -0.56
CIITA-207ENST00000571545 BMP8BP34820 402 aa11.56□□□□□ -0.56
CIITA-207ENST00000571545 NT5C2P49902 561 aa11.56□□□□□ -0.56
CIITA-207ENST00000571545 MNX1P50219 401 aaPredicted RBP11.56□□□□□ -0.56
CIITA-207ENST00000571545 PDE1AP54750 535 aa11.56□□□□□ -0.56
CIITA-207ENST00000571545 OTUD7AQ8TE49 926 aaPredicted RBP11.56□□□□□ -0.56
CIITA-207ENST00000571545 CEP95Q96GE4 821 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms