RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 MECOMQ03112 1051 aa15.05■□□□□ -0
VPS4A-204ENST00000566354 MORC3Q14149 939 aa15.05■□□□□ -0
VPS4A-204ENST00000566354 SPECC1Q5M775 1068 aa15.05■□□□□ -0
VPS4A-204ENST00000566354 AKNAD1Q5T1N1 836 aa15.05■□□□□ -0
VPS4A-204ENST00000566354 PDILTQ8N807 584 aa15.05■□□□□ -0
VPS4A-204ENST00000566354 TC2NQ8N9U0 490 aa15.05■□□□□ -0
VPS4A-204ENST00000566354 WDR66Q8TBY9 1149 aa15.05■□□□□ -0
VPS4A-204ENST00000566354 NSUN4Q96CB9 384 aaKnown RBP15.05■□□□□ -0
VPS4A-204ENST00000566354 COA1Q9GZY4 146 aa15.05■□□□□ -0
VPS4A-204ENST00000566354 UBE2Q2LH0YL09 131 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 MBD4O95243 580 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 MAP3K9P80192 1104 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 SART3Q15020 963 aaKnown RBP15.04■□□□□ -0
VPS4A-204ENST00000566354 MFSD6Q6ZSS7 791 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 EYA3Q99504 573 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 MTA3Q9BTC8 594 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 RTFDC1Q9BY42 306 aaPredicted RBP15.04■□□□□ -0
VPS4A-204ENST00000566354 ARMT1Q9H993 441 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 INCENPQ9NQS7 918 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 CEP131Q9UPN4 1083 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 CCDC88AQ3V6T2 1871 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 CCDC196A0A1B0GTZ2 297 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 GNG11P61952 73 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 CTDSPL2Q05D32 466 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 FMR1Q06787 632 aaKnown RBP eCLIP15.04■□□□□ -0
VPS4A-204ENST00000566354 TMTC2Q8N394 836 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 DBNDD1Q9H9R9 158 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 EPB41L4AQ9HCS5 686 aaPredicted RBP15.04■□□□□ -0
VPS4A-204ENST00000566354 ST7Q9NRC1 585 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 PIM2Q9P1W9 311 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 SERTAD1Q9UHV2 236 aa15.04■□□□□ -0
VPS4A-204ENST00000566354 BRCA1P38398 1863 aaKnown RBP15.04■□□□□ -0
VPS4A-204ENST00000566354 DEXIO95424 95 aa15.03■□□□□ -0
VPS4A-204ENST00000566354 ERCC5P28715 1186 aaPredicted RBP15.03■□□□□ -0
VPS4A-204ENST00000566354 GUCY1A2P33402 732 aa15.03■□□□□ -0
VPS4A-204ENST00000566354 PLA2G4AP47712 749 aa15.03■□□□□ -0
VPS4A-204ENST00000566354 GTF2IP78347 998 aa15.03■□□□□ -0
VPS4A-204ENST00000566354 RTN1Q16799 776 aa15.03■□□□□ -0
VPS4A-204ENST00000566354 PTPN21Q16825 1174 aa15.03■□□□□ -0
VPS4A-204ENST00000566354 CT47A1Q5JQC4 288 aaPredicted RBP15.03■□□□□ -0
VPS4A-204ENST00000566354 CC2D2BQ6DHV5 1058 aa15.03■□□□□ -0
VPS4A-204ENST00000566354 LCORLQ8N3X6 602 aa15.03■□□□□ -0
VPS4A-204ENST00000566354 GPR161Q8N6U8 529 aaKnown RBP15.03■□□□□ -0
VPS4A-204ENST00000566354 CEP120Q8N960 986 aa15.03■□□□□ -0
VPS4A-204ENST00000566354 TSPYL1Q9H0U9 437 aa15.03■□□□□ -0
VPS4A-204ENST00000566354 SRPRBQ9Y5M8 271 aaKnown RBP15.03■□□□□ -0
VPS4A-204ENST00000566354 RCAN1P53805 252 aa15.03■□□□□ -0
VPS4A-204ENST00000566354 AOC3Q16853 763 aa15.03■□□□□ -0
VPS4A-204ENST00000566354 FAM177A1Q8N128 213 aaPredicted RBP15.03■□□□□ -0
VPS4A-204ENST00000566354 SPATA20Q8TB22 786 aa15.03■□□□□ -0
VPS4A-204ENST00000566354 KCNQ5Q9NR82 932 aa15.03■□□□□ -0
VPS4A-204ENST00000566354 KCNJ14Q9UNX9 436 aa15.03■□□□□ -0
VPS4A-204ENST00000566354 LDHBP07195 334 aaKnown RBP15.02■□□□□ -0
VPS4A-204ENST00000566354 GNAT2P19087 354 aa15.02■□□□□ -0
VPS4A-204ENST00000566354 ADKP55263 362 aaKnown RBP15.02■□□□□ -0
VPS4A-204ENST00000566354 GRIN1Q05586 938 aa15.02■□□□□ -0
VPS4A-204ENST00000566354 NR1I3Q14994 352 aa15.02■□□□□ -0
VPS4A-204ENST00000566354 WTAPQ15007 396 aa15.02■□□□□ -0
VPS4A-204ENST00000566354 HSP90AA4PQ58FG1 418 aa15.02■□□□□ -0
VPS4A-204ENST00000566354 MFSD14BQ5SR56 506 aa15.02■□□□□ -0
VPS4A-204ENST00000566354 CRACR2BQ8N4Y2 399 aaPredicted RBP15.02■□□□□ -0
VPS4A-204ENST00000566354 CCDC34Q96HJ3 373 aa15.02■□□□□ -0
VPS4A-204ENST00000566354 WDR24Q96S15 920 aa15.02■□□□□ -0
VPS4A-204ENST00000566354 NACAP1Q9BZK3 213 aa15.02■□□□□ -0
VPS4A-204ENST00000566354 GEMIN8Q9NWZ8 242 aaKnown RBP15.02■□□□□ -0
VPS4A-204ENST00000566354 CD2APQ9Y5K6 639 aa15.02■□□□□ -0
VPS4A-204ENST00000566354 MRFAP1Q9Y605 127 aa15.02■□□□□ -0
VPS4A-204ENST00000566354 ERICH2A1L162 156 aa15.01□□□□□ -0.01
VPS4A-204ENST00000566354 GSG1L2A8MUP6 293 aa15.01□□□□□ -0.01
VPS4A-204ENST00000566354 G3V3G9 751 aa15.01□□□□□ -0.01
VPS4A-204ENST00000566354 PRKAB2O43741 272 aa15.01□□□□□ -0.01
VPS4A-204ENST00000566354 PRR29P0C7W0 189 aa15.01□□□□□ -0.01
VPS4A-204ENST00000566354 PSEN1P49768 467 aa15.01□□□□□ -0.01
VPS4A-204ENST00000566354 DCAF8Q5TAQ9 597 aa15.01□□□□□ -0.01
VPS4A-204ENST00000566354 TOGARAM2Q6ZUX3 1019 aa15.01□□□□□ -0.01
VPS4A-204ENST00000566354 DZIP1Q86YF9 867 aaKnown RBP15.01□□□□□ -0.01
VPS4A-204ENST00000566354 STAG1Q8WVM7 1258 aa15.01□□□□□ -0.01
VPS4A-204ENST00000566354 SCN9AQ15858 1988 aa15.01□□□□□ -0.01
VPS4A-204ENST00000566354 FAM205AQ6ZU69 1335 aa15.01□□□□□ -0.01
VPS4A-204ENST00000566354 ACTN4O43707 911 aaKnown RBP15.01□□□□□ -0.01
VPS4A-204ENST00000566354 PLCD1P51178 756 aa15.01□□□□□ -0.01
VPS4A-204ENST00000566354 DYNLL1P63167 89 aaKnown RBP15.01□□□□□ -0.01
VPS4A-204ENST00000566354 DIXDC1Q155Q3 683 aa15.01□□□□□ -0.01
VPS4A-204ENST00000566354 SPTY2D1Q68D10 685 aaPredicted RBP15.01□□□□□ -0.01
VPS4A-204ENST00000566354 MXD3Q9BW11 206 aa15.01□□□□□ -0.01
VPS4A-204ENST00000566354 PCDHB6Q9Y5E3 794 aa15.01□□□□□ -0.01
VPS4A-204ENST00000566354 TACC3Q9Y6A5 838 aa15.01□□□□□ -0.01
VPS4A-204ENST00000566354 MAST2Q6P0Q8 1798 aa15.01□□□□□ -0.01
VPS4A-204ENST00000566354 A0A1B0GTH6 734 aa15□□□□□ -0.01
VPS4A-204ENST00000566354 PPP2R3AQ06190 1150 aa15□□□□□ -0.01
VPS4A-204ENST00000566354 DALRD3Q5D0E6 543 aaKnown RBP15□□□□□ -0.01
VPS4A-204ENST00000566354 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15□□□□□ -0.01
VPS4A-204ENST00000566354 RSRC2Q7L4I2 434 aaKnown RBP15□□□□□ -0.01
VPS4A-204ENST00000566354 NLGN2Q8NFZ4 835 aa15□□□□□ -0.01
VPS4A-204ENST00000566354 KIFC2Q96AC6 838 aa15□□□□□ -0.01
VPS4A-204ENST00000566354 PANX2Q96RD6 677 aa15□□□□□ -0.01
VPS4A-204ENST00000566354 RIOK1Q9BRS2 568 aaKnown RBP15□□□□□ -0.01
VPS4A-204ENST00000566354 TIAM2Q8IVF5 1701 aa15□□□□□ -0.01
VPS4A-204ENST00000566354 MAGEB6P1A0A0J9YX57 407 aa15□□□□□ -0.01
VPS4A-204ENST00000566354 CYP2C19P33261 490 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms