RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 ZNF287Q9HBT7 754 aa22.4■■□□□ 1.18
CLN3-218ENST00000565688 MINDY4BA8MYZ0 360 aa22.39■■□□□ 1.17
CLN3-218ENST00000565688 DNM1LO00429 736 aa22.39■■□□□ 1.17
CLN3-218ENST00000565688 GPAA1O43292 621 aa22.39■■□□□ 1.17
CLN3-218ENST00000565688 COBLO75128 1261 aa22.39■■□□□ 1.17
CLN3-218ENST00000565688 RASA1P20936 1047 aa22.39■■□□□ 1.17
CLN3-218ENST00000565688 TRPV1Q8NER1 839 aa22.39■■□□□ 1.17
CLN3-218ENST00000565688 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.39■■□□□ 1.17
CLN3-218ENST00000565688 PPP1R9AQ9ULJ8 1098 aa22.39■■□□□ 1.17
CLN3-218ENST00000565688 FRMPD3Q5JV73 1810 aa22.38■■□□□ 1.17
CLN3-218ENST00000565688 RAD21O60216 631 aa22.38■■□□□ 1.17
CLN3-218ENST00000565688 SYN1P17600 705 aa22.38■■□□□ 1.17
CLN3-218ENST00000565688 COPB2P35606 906 aa22.38■■□□□ 1.17
CLN3-218ENST00000565688 TDO2P48775 406 aa22.38■■□□□ 1.17
CLN3-218ENST00000565688 LRRC26Q2I0M4 334 aa22.38■■□□□ 1.17
CLN3-218ENST00000565688 FBXO28Q9NVF7 368 aa22.38■■□□□ 1.17
CLN3-218ENST00000565688 NYAP2Q9P242 653 aa22.38■■□□□ 1.17
CLN3-218ENST00000565688 PARP14Q460N5 1801 aa22.38■■□□□ 1.17
CLN3-218ENST00000565688 LAMA3Q16787 3333 aa22.37■■□□□ 1.17
CLN3-218ENST00000565688 VWA5AO00534 786 aa22.37■■□□□ 1.17
CLN3-218ENST00000565688 APPP05067 770 aa22.37■■□□□ 1.17
CLN3-218ENST00000565688 MAGEA10P43363 369 aaPredicted RBP22.37■■□□□ 1.17
CLN3-218ENST00000565688 FAM83BQ5T0W9 1011 aa22.37■■□□□ 1.17
CLN3-218ENST00000565688 RIOX2Q8IUF8 465 aa22.37■■□□□ 1.17
CLN3-218ENST00000565688 ARRDC4Q8NCT1 418 aa22.37■■□□□ 1.17
CLN3-218ENST00000565688 SENP6Q9GZR1 1112 aaPredicted RBP22.37■■□□□ 1.17
CLN3-218ENST00000565688 PCDHB15Q9Y5E8 787 aa22.37■■□□□ 1.17
CLN3-218ENST00000565688 GREB1LQ9C091 1923 aaPredicted RBP22.36■■□□□ 1.17
CLN3-218ENST00000565688 PATL2C9JE40 543 aaKnown RBP22.36■■□□□ 1.17
CLN3-218ENST00000565688 SEPT4O43236 478 aa22.36■■□□□ 1.17
CLN3-218ENST00000565688 STAT3P40763 770 aa22.36■■□□□ 1.17
CLN3-218ENST00000565688 MAML3Q96JK9 1138 aa22.36■■□□□ 1.17
CLN3-218ENST00000565688 MMP19Q99542 508 aa22.36■■□□□ 1.17
CLN3-218ENST00000565688 NACAP1Q9BZK3 213 aa22.36■■□□□ 1.17
CLN3-218ENST00000565688 EPB41L4AQ9HCS5 686 aaPredicted RBP22.36■■□□□ 1.17
CLN3-218ENST00000565688 M0R2C6 588 aa22.35■■□□□ 1.17
CLN3-218ENST00000565688 KCTD2Q14681 263 aa22.35■■□□□ 1.17
CLN3-218ENST00000565688 ZNF444Q8N0Y2 327 aaPredicted RBP22.35■■□□□ 1.17
CLN3-218ENST00000565688 STK11IPQ8N1F8 1099 aa22.35■■□□□ 1.17
CLN3-218ENST00000565688 PI4K2BQ8TCG2 481 aa22.35■■□□□ 1.17
CLN3-218ENST00000565688 SLF1Q9BQI6 1058 aa22.35■■□□□ 1.17
CLN3-218ENST00000565688 NRBP1Q9UHY1 535 aa22.35■■□□□ 1.17
CLN3-218ENST00000565688 F5H6K3 240 aa22.34■■□□□ 1.17
CLN3-218ENST00000565688 KLRC3Q07444 240 aa22.34■■□□□ 1.17
CLN3-218ENST00000565688 FSD1Q9BTV5 496 aa22.34■■□□□ 1.17
CLN3-218ENST00000565688 ZNF214Q9UL59 606 aaPredicted RBP22.34■■□□□ 1.17
CLN3-218ENST00000565688 SYNPO2Q9UMS6 1093 aa22.34■■□□□ 1.17
CLN3-218ENST00000565688 DIS3Q9Y2L1 958 aaKnown RBP22.34■■□□□ 1.17
CLN3-218ENST00000565688 KBTBD13C9JR72 458 aa22.33■■□□□ 1.17
CLN3-218ENST00000565688 SOX1O00570 391 aaPredicted RBP22.33■■□□□ 1.17
CLN3-218ENST00000565688 MX1P20591 662 aa22.33■■□□□ 1.17
CLN3-218ENST00000565688 IFNL3Q8IZI9 196 aa22.33■■□□□ 1.17
CLN3-218ENST00000565688 TDHQ8IZJ6 230 aa22.33■■□□□ 1.17
CLN3-218ENST00000565688 PRPF38AQ8NAV1 312 aaKnown RBP22.33■■□□□ 1.17
CLN3-218ENST00000565688 REPS2Q8NFH8 660 aa22.33■■□□□ 1.17
CLN3-218ENST00000565688 UBE2OQ9C0C9 1292 aaKnown RBP22.33■■□□□ 1.17
CLN3-218ENST00000565688 ZBTB47Q9UFB7 747 aaPredicted RBP22.33■■□□□ 1.17
CLN3-218ENST00000565688 COL11A1P12107 1806 aaPredicted RBP22.33■■□□□ 1.16
CLN3-218ENST00000565688 IGKV6D-41A0A0C4DH26 115 aa22.32■■□□□ 1.16
CLN3-218ENST00000565688 NDUFB10O96000 172 aa22.32■■□□□ 1.16
CLN3-218ENST00000565688 SLC3A2P08195 630 aaKnown RBP22.32■■□□□ 1.16
CLN3-218ENST00000565688 GPR153Q6NV75 609 aa22.32■■□□□ 1.16
CLN3-218ENST00000565688 MKL1Q969V6 931 aa22.32■■□□□ 1.16
CLN3-218ENST00000565688 NUP88Q99567 741 aaPredicted RBP22.32■■□□□ 1.16
CLN3-218ENST00000565688 TEX13BQ9BXU2 312 aa22.32■■□□□ 1.16
CLN3-218ENST00000565688 CLIP2Q9UDT6 1046 aa22.32■■□□□ 1.16
CLN3-218ENST00000565688 RRP1P56182 461 aaKnown RBP22.31■■□□□ 1.16
CLN3-218ENST00000565688 PDE4BQ07343 736 aa22.31■■□□□ 1.16
CLN3-218ENST00000565688 LRIT3Q3SXY7 679 aa22.31■■□□□ 1.16
CLN3-218ENST00000565688 ZMYM1Q5SVZ6 1142 aa22.31■■□□□ 1.16
CLN3-218ENST00000565688 PRAMEF19Q5SWL8 479 aa22.31■■□□□ 1.16
CLN3-218ENST00000565688 GJC2Q5T442 439 aaPredicted RBP22.31■■□□□ 1.16
CLN3-218ENST00000565688 OTUD7AQ8TE49 926 aaPredicted RBP22.31■■□□□ 1.16
CLN3-218ENST00000565688 LRCH3Q96II8 777 aa22.31■■□□□ 1.16
CLN3-218ENST00000565688 MTMR4Q9NYA4 1195 aa22.31■■□□□ 1.16
CLN3-218ENST00000565688 PRDM1O75626 825 aa22.3■■□□□ 1.16
CLN3-218ENST00000565688 TTLL1O95922 423 aa22.3■■□□□ 1.16
CLN3-218ENST00000565688 PGK2P07205 417 aa22.3■■□□□ 1.16
CLN3-218ENST00000565688 ATN1P54259 1190 aaPredicted RBP22.3■■□□□ 1.16
CLN3-218ENST00000565688 ZNF792Q3KQV3 632 aa22.3■■□□□ 1.16
CLN3-218ENST00000565688 CEP95Q96GE4 821 aa22.3■■□□□ 1.16
CLN3-218ENST00000565688 SEC62Q99442 399 aaKnown RBP22.3■■□□□ 1.16
CLN3-218ENST00000565688 TINF2Q9BSI4 451 aa22.3■■□□□ 1.16
CLN3-218ENST00000565688 NAPBQ9H115 298 aa22.3■■□□□ 1.16
CLN3-218ENST00000565688 PLIN4Q96Q06 1357 aa22.29■■□□□ 1.16
CLN3-218ENST00000565688 ATP2A1O14983 1001 aa22.29■■□□□ 1.16
CLN3-218ENST00000565688 ZBED4O75132 1171 aa22.29■■□□□ 1.16
CLN3-218ENST00000565688 ANO1Q5XXA6 986 aa22.29■■□□□ 1.16
CLN3-218ENST00000565688 SNRNP48Q6IEG0 339 aaKnown RBP22.29■■□□□ 1.16
CLN3-218ENST00000565688 GMCL1P1Q8NEA9 526 aa22.29■■□□□ 1.16
CLN3-218ENST00000565688 LBHD1Q9BQE6 289 aaPredicted RBP22.29■■□□□ 1.16
CLN3-218ENST00000565688 PRKAG2Q9UGJ0 569 aa22.29■■□□□ 1.16
CLN3-218ENST00000565688 FEM1BQ9UK73 627 aa22.29■■□□□ 1.16
CLN3-218ENST00000565688 CTDP1Q9Y5B0 961 aaPredicted RBP22.29■■□□□ 1.16
CLN3-218ENST00000565688 ZNFX1Q9P2E3 1918 aaKnown RBP22.29■■□□□ 1.16
CLN3-218ENST00000565688 TSPY3P0CV98 308 aa22.28■■□□□ 1.16
CLN3-218ENST00000565688 TSPY8P0CW00 308 aa22.28■■□□□ 1.16
CLN3-218ENST00000565688 RARBP10826 455 aa22.28■■□□□ 1.16
CLN3-218ENST00000565688 RTP1P59025 263 aa22.28■■□□□ 1.16
CLN3-218ENST00000565688 MSL3Q8N5Y2 521 aaKnown RBP22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms