RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 EEF2P13639 858 aaKnown RBP19.8■□□□□ 0.76
CLN3-208ENST00000561505 ZNF792Q3KQV3 632 aa19.8■□□□□ 0.76
CLN3-208ENST00000561505 CTR9Q6PD62 1173 aa19.8■□□□□ 0.76
CLN3-208ENST00000561505 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.8■□□□□ 0.761e-8■■■■■ 50
CLN3-208ENST00000561505 BOLA2Q9H3K6 86 aa19.8■□□□□ 0.76
CLN3-208ENST00000561505 ZNF214Q9UL59 606 aaPredicted RBP19.8■□□□□ 0.76
CLN3-208ENST00000561505 CYP2D7A0A087X1C5 515 aa19.79■□□□□ 0.76
CLN3-208ENST00000561505 KBTBD13C9JR72 458 aa19.79■□□□□ 0.76
CLN3-208ENST00000561505 CHGBP05060 677 aa19.79■□□□□ 0.76
CLN3-208ENST00000561505 PRAMEF19Q5SWL8 479 aa19.79■□□□□ 0.76
CLN3-208ENST00000561505 NCAPG2Q86XI2 1143 aa19.79■□□□□ 0.76
CLN3-208ENST00000561505 SPICE1Q8N0Z3 855 aa19.79■□□□□ 0.76
CLN3-208ENST00000561505 PDLIM7Q9NR12 457 aa19.79■□□□□ 0.76
CLN3-208ENST00000561505 PHF24Q9UPV7 400 aa19.79■□□□□ 0.76
CLN3-208ENST00000561505 GREB1LQ9C091 1923 aaPredicted RBP19.78■□□□□ 0.76
CLN3-208ENST00000561505 BAZ2AQ9UIF9 1905 aaKnown RBP19.78■□□□□ 0.76
CLN3-208ENST00000561505 VWA5AO00534 786 aa19.78■□□□□ 0.76
CLN3-208ENST00000561505 SBK1Q52WX2 424 aa19.78■□□□□ 0.76
CLN3-208ENST00000561505 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.78■□□□□ 0.76
CLN3-208ENST00000561505 TINF2Q9BSI4 451 aa19.78■□□□□ 0.76
CLN3-208ENST00000561505 FBXO28Q9NVF7 368 aa19.78■□□□□ 0.76
CLN3-208ENST00000561505 PRKAG2Q9UGJ0 569 aa19.78■□□□□ 0.76
CLN3-208ENST00000561505 PPP1R9AQ9ULJ8 1098 aa19.78■□□□□ 0.76
CLN3-208ENST00000561505 ZNFX1Q9P2E3 1918 aaKnown RBP19.78■□□□□ 0.76
CLN3-208ENST00000561505 MYH8P13535 1937 aa19.77■□□□□ 0.76
CLN3-208ENST00000561505 COPB2P35606 906 aa19.77■□□□□ 0.76
CLN3-208ENST00000561505 ADCYAP1R1P41586 468 aa19.77■□□□□ 0.76
CLN3-208ENST00000561505 PLS1Q14651 629 aa19.77■□□□□ 0.76
CLN3-208ENST00000561505 SHHQ15465 462 aa19.77■□□□□ 0.76
CLN3-208ENST00000561505 FAM47AQ5JRC9 791 aa19.77■□□□□ 0.76
CLN3-208ENST00000561505 ANO1Q5XXA6 986 aa19.77■□□□□ 0.76
CLN3-208ENST00000561505 PUS7LQ9H0K6 701 aaKnown RBP19.77■□□□□ 0.76
CLN3-208ENST00000561505 CHMP4BQ9H444 224 aaKnown RBP19.77■□□□□ 0.76
CLN3-208ENST00000561505 ATP11BQ9Y2G3 1177 aa19.77■□□□□ 0.76
CLN3-208ENST00000561505 COG6Q9Y2V7 657 aa19.77■□□□□ 0.76
CLN3-208ENST00000561505 TRIM43BA6NCK2 446 aa19.76■□□□□ 0.75
CLN3-208ENST00000561505 APBB1O00213 710 aa19.76■□□□□ 0.75
CLN3-208ENST00000561505 ZNF865P0CJ78 1059 aaPredicted RBP19.76■□□□□ 0.75
CLN3-208ENST00000561505 STAT3P40763 770 aa19.76■□□□□ 0.75
CLN3-208ENST00000561505 TRIM60Q495X7 471 aa19.76■□□□□ 0.75
CLN3-208ENST00000561505 GIMAP6Q6P9H5 292 aa19.76■□□□□ 0.75
CLN3-208ENST00000561505 MSL3Q8N5Y2 521 aaKnown RBP19.76■□□□□ 0.75
CLN3-208ENST00000561505 TRIM43Q96BQ3 446 aaPredicted RBP19.76■□□□□ 0.75
CLN3-208ENST00000561505 STRBPQ96SI9 672 aaKnown RBP19.76■□□□□ 0.75
CLN3-208ENST00000561505 SMCHD1A6NHR9 2005 aa19.75■□□□□ 0.75
CLN3-208ENST00000561505 COL11A1P12107 1806 aaPredicted RBP19.75■□□□□ 0.75
CLN3-208ENST00000561505 ATP2A1O14983 1001 aa19.75■□□□□ 0.75
CLN3-208ENST00000561505 C9orf50Q5SZB4 431 aa19.75■□□□□ 0.75
CLN3-208ENST00000561505 ZSCAN25Q6NSZ9 544 aa19.75■□□□□ 0.75
CLN3-208ENST00000561505 SH3RF1Q7Z6J0 888 aa19.75■□□□□ 0.75
CLN3-208ENST00000561505 AMOTL1Q8IY63 956 aa19.75■□□□□ 0.75
CLN3-208ENST00000561505 MMP19Q99542 508 aa19.75■□□□□ 0.75
CLN3-208ENST00000561505 GOPCQ9HD26 462 aa19.75■□□□□ 0.75
CLN3-208ENST00000561505 NYAP2Q9P242 653 aa19.75■□□□□ 0.75
CLN3-208ENST00000561505 ARPP21Q9UBL0 812 aaPredicted RBP19.75■□□□□ 0.75
CLN3-208ENST00000561505 SLC4A4Q9Y6R1 1079 aa19.75■□□□□ 0.75
CLN3-208ENST00000561505 DNAJC25-GNG10A0A024R161 153 aa19.74■□□□□ 0.75
CLN3-208ENST00000561505 SMAD3P84022 425 aaKnown RBP19.74■□□□□ 0.75
CLN3-208ENST00000561505 TLE2Q04725 743 aa19.74■□□□□ 0.75
CLN3-208ENST00000561505 MAMDC4Q6UXC1 1216 aa19.74■□□□□ 0.75
CLN3-208ENST00000561505 BADQ92934 168 aa19.74■□□□□ 0.75
CLN3-208ENST00000561505 TSEN34Q9BSV6 310 aaKnown RBP19.74■□□□□ 0.75
CLN3-208ENST00000561505 TACC3Q9Y6A5 838 aa19.74■□□□□ 0.75
CLN3-208ENST00000561505 MYH7P12883 1935 aa19.74■□□□□ 0.75
CLN3-208ENST00000561505 UNC80Q8N2C7 3258 aa19.73■□□□□ 0.75
CLN3-208ENST00000561505 IGKV6D-41A0A0C4DH26 115 aa19.73■□□□□ 0.75
CLN3-208ENST00000561505 GSG1L2A8MUP6 293 aa19.73■□□□□ 0.75
CLN3-208ENST00000561505 KIAA0355O15063 1070 aa19.73■□□□□ 0.75
CLN3-208ENST00000561505 ADAMTS4O75173 837 aa19.73■□□□□ 0.75
CLN3-208ENST00000561505 PGK2P07205 417 aa19.73■□□□□ 0.75
CLN3-208ENST00000561505 RARBP10826 455 aa19.73■□□□□ 0.75
CLN3-208ENST00000561505 TAL1P17542 331 aaPredicted RBP19.73■□□□□ 0.75
CLN3-208ENST00000561505 RASA1P20936 1047 aa19.73■□□□□ 0.75
CLN3-208ENST00000561505 KCTD2Q14681 263 aa19.73■□□□□ 0.75
CLN3-208ENST00000561505 DDRGK1Q96HY6 314 aa19.73■□□□□ 0.75
CLN3-208ENST00000561505 LRRCC1Q9C099 1032 aa19.73■□□□□ 0.75
CLN3-208ENST00000561505 XPNPEP3Q9NQH7 507 aa19.73■□□□□ 0.75
CLN3-208ENST00000561505 SYNPO2Q9UMS6 1093 aa19.73■□□□□ 0.75
CLN3-208ENST00000561505 ITGB8P26012 769 aa19.72■□□□□ 0.75
CLN3-208ENST00000561505 FAM83BQ5T0W9 1011 aa19.72■□□□□ 0.75
CLN3-208ENST00000561505 CCSAPQ6IQ19 270 aaPredicted RBP19.72■□□□□ 0.75
CLN3-208ENST00000561505 ANKRD33Q7Z3H0 272 aa19.72■□□□□ 0.75
CLN3-208ENST00000561505 RNF180Q86T96 592 aa19.72■□□□□ 0.75
CLN3-208ENST00000561505 KLHDC9Q8NEP7 349 aa19.72■□□□□ 0.75
CLN3-208ENST00000561505 MKL1Q969V6 931 aa19.72■□□□□ 0.75
CLN3-208ENST00000561505 FERMT2Q96AC1 680 aa19.72■□□□□ 0.75
CLN3-208ENST00000561505 TOX2Q96NM4 488 aa19.72■□□□□ 0.75
CLN3-208ENST00000561505 SEMA6BQ9H3T3 888 aa19.72■□□□□ 0.75
CLN3-208ENST00000561505 SYNGAP1Q96PV0 1343 aa19.72■□□□□ 0.75
CLN3-208ENST00000561505 F5H6K3 240 aa19.71■□□□□ 0.75
CLN3-208ENST00000561505 SNAI1O95863 264 aaPredicted RBP19.71■□□□□ 0.75
CLN3-208ENST00000561505 AKR1A1P14550 325 aa19.71■□□□□ 0.75
CLN3-208ENST00000561505 KLRC3Q07444 240 aa19.71■□□□□ 0.75
CLN3-208ENST00000561505 ZNF697Q5TEC3 545 aa19.71■□□□□ 0.75
CLN3-208ENST00000561505 ZNF467Q7Z7K2 595 aaPredicted RBP19.71■□□□□ 0.75
CLN3-208ENST00000561505 KBTBD3Q8NAB2 608 aa19.71■□□□□ 0.75
CLN3-208ENST00000561505 TEX13BQ9BXU2 312 aa19.71■□□□□ 0.75
CLN3-208ENST00000561505 PLXNA1Q9UIW2 1896 aa19.71■□□□□ 0.75
CLN3-208ENST00000561505 A0A1W2PQ45 241 aaPredicted RBP19.7■□□□□ 0.74
CLN3-208ENST00000561505 A0A1W2PQY0 241 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms