RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 USP5P45974 858 aa13.06□□□□□ -0.32
SYNE2-221ENST00000556342 USP14P54578 494 aa13.06□□□□□ -0.32
SYNE2-221ENST00000556342 RAB3GAP1Q15042 981 aa13.06□□□□□ -0.32
SYNE2-221ENST00000556342 WDR78Q5VTH9 848 aa13.06□□□□□ -0.32
SYNE2-221ENST00000556342 LBX2Q6XYB7 198 aa13.06□□□□□ -0.32
SYNE2-221ENST00000556342 CATSPERGQ6ZRH7 1159 aa13.06□□□□□ -0.32
SYNE2-221ENST00000556342 TMEM57Q8N5G2 664 aa13.06□□□□□ -0.32
SYNE2-221ENST00000556342 MIGA1Q8NAN2 632 aa13.06□□□□□ -0.32
SYNE2-221ENST00000556342 SENP6Q9GZR1 1112 aaPredicted RBP13.06□□□□□ -0.32
SYNE2-221ENST00000556342 TLR7Q9NYK1 1049 aaKnown RBP13.06□□□□□ -0.32
SYNE2-221ENST00000556342 DDX20Q9UHI6 824 aaKnown RBP13.06□□□□□ -0.32
SYNE2-221ENST00000556342 FOCADQ5VW36 1801 aa13.06□□□□□ -0.32
SYNE2-221ENST00000556342 CDK5RAP2Q96SN8 1893 aa13.06□□□□□ -0.32
SYNE2-221ENST00000556342 MSCO60682 206 aa13.05□□□□□ -0.32
SYNE2-221ENST00000556342 ATP8B2P98198 1209 aa13.05□□□□□ -0.32
SYNE2-221ENST00000556342 GRB14Q14449 540 aa13.05□□□□□ -0.32
SYNE2-221ENST00000556342 ABCB5Q2M3G0 1257 aa13.05□□□□□ -0.32
SYNE2-221ENST00000556342 TTC6Q86TZ1 520 aa13.05□□□□□ -0.32
SYNE2-221ENST00000556342 MAGEB6Q8N7X4 407 aa13.05□□□□□ -0.32
SYNE2-221ENST00000556342 ACER1Q8TDN7 264 aa13.05□□□□□ -0.32
SYNE2-221ENST00000556342 LPAR1Q92633 364 aa13.05□□□□□ -0.32
SYNE2-221ENST00000556342 CCDC8Q9H0W5 538 aaPredicted RBP13.05□□□□□ -0.32
SYNE2-221ENST00000556342 BTBD7Q9P203 1132 aa13.05□□□□□ -0.32
SYNE2-221ENST00000556342 NOP58Q9Y2X3 529 aaKnown RBP13.05□□□□□ -0.32
SYNE2-221ENST00000556342 IVNS1ABPQ9Y6Y0 642 aa13.05□□□□□ -0.32
SYNE2-221ENST00000556342 CYP2C19P33261 490 aa13.04□□□□□ -0.32
SYNE2-221ENST00000556342 ATP2B2Q01814 1243 aa13.04□□□□□ -0.32
SYNE2-221ENST00000556342 TSR1Q2NL82 804 aaKnown RBP13.04□□□□□ -0.32
SYNE2-221ENST00000556342 CERKLQ49MI3 558 aaPredicted RBP13.04□□□□□ -0.32
SYNE2-221ENST00000556342 NPLOC4Q8TAT6 608 aa13.04□□□□□ -0.32
SYNE2-221ENST00000556342 EAF2Q96CJ1 260 aaPredicted RBP13.04□□□□□ -0.32
SYNE2-221ENST00000556342 LBHD1Q9BQE6 289 aaPredicted RBP13.04□□□□□ -0.32
SYNE2-221ENST00000556342 C1orf115Q9H7X2 142 aa13.04□□□□□ -0.32
SYNE2-221ENST00000556342 CABP5Q9NP86 173 aa13.04□□□□□ -0.32
SYNE2-221ENST00000556342 RABGEF1Q9UJ41 708 aa13.04□□□□□ -0.32
SYNE2-221ENST00000556342 DNM1LO00429 736 aa13.03□□□□□ -0.32
SYNE2-221ENST00000556342 IGHA2P01877 340 aa13.03□□□□□ -0.32
SYNE2-221ENST00000556342 CNGA1P29973 690 aa13.03□□□□□ -0.32
SYNE2-221ENST00000556342 GUCY1A2P33402 732 aa13.03□□□□□ -0.32
SYNE2-221ENST00000556342 SHMT1P34896 483 aa13.03□□□□□ -0.32
SYNE2-221ENST00000556342 PROX2Q3B8N5 592 aa13.03□□□□□ -0.32
SYNE2-221ENST00000556342 ZKSCAN2Q63HK3 967 aa13.03□□□□□ -0.32
SYNE2-221ENST00000556342 FAM109BQ6ICB4 259 aaPredicted RBP13.03□□□□□ -0.32
SYNE2-221ENST00000556342 TMED8Q6PL24 325 aaPredicted RBP13.03□□□□□ -0.32
SYNE2-221ENST00000556342 TRPV1Q8NER1 839 aa13.03□□□□□ -0.32
SYNE2-221ENST00000556342 GUCD1Q96NT3 240 aa13.03□□□□□ -0.32
SYNE2-221ENST00000556342 RPAP3Q9H6T3 665 aaPredicted RBP13.03□□□□□ -0.32
SYNE2-221ENST00000556342 CYBAP13498 195 aa13.02□□□□□ -0.33
SYNE2-221ENST00000556342 PLCD1P51178 756 aa13.02□□□□□ -0.33
SYNE2-221ENST00000556342 MAP3K12Q12852 859 aa13.02□□□□□ -0.33
SYNE2-221ENST00000556342 RIOK1Q9BRS2 568 aaKnown RBP13.02□□□□□ -0.33
SYNE2-221ENST00000556342 ANTXR1Q9H6X2 564 aa13.02□□□□□ -0.33
SYNE2-221ENST00000556342 MYO5AQ9Y4I1 1855 aaKnown RBP13.02□□□□□ -0.33
SYNE2-221ENST00000556342 RTP1P59025 263 aa13.01□□□□□ -0.33
SYNE2-221ENST00000556342 GABPAQ06546 454 aa13.01□□□□□ -0.33
SYNE2-221ENST00000556342 OLFML2BQ68BL8 750 aa13.01□□□□□ -0.33
SYNE2-221ENST00000556342 MOV10L1Q9BXT6 1211 aaKnown RBP13.01□□□□□ -0.33
SYNE2-221ENST00000556342 PRKAG2Q9UGJ0 569 aa13.01□□□□□ -0.33
SYNE2-221ENST00000556342 FRMPD3Q5JV73 1810 aa13.01□□□□□ -0.33
SYNE2-221ENST00000556342 A0A1W2PRG0 241 aa13□□□□□ -0.33
SYNE2-221ENST00000556342 CCER2I3L3R5 266 aa13□□□□□ -0.33
SYNE2-221ENST00000556342 STRNO43815 780 aa13□□□□□ -0.33
SYNE2-221ENST00000556342 ADORA2AP29274 412 aa13□□□□□ -0.33
SYNE2-221ENST00000556342 MLLT3P42568 568 aaPredicted RBP13□□□□□ -0.33
SYNE2-221ENST00000556342 SEPT2Q15019 361 aa13□□□□□ -0.33
SYNE2-221ENST00000556342 GJC2Q5T442 439 aaPredicted RBP13□□□□□ -0.33
SYNE2-221ENST00000556342 DPP9Q86TI2 863 aa13□□□□□ -0.33
SYNE2-221ENST00000556342 PHF6Q8IWS0 365 aaKnown RBP eCLIP13□□□□□ -0.33
SYNE2-221ENST00000556342 FAM161BQ96MY7 647 aa13□□□□□ -0.33
SYNE2-221ENST00000556342 COL25A1Q9BXS0 654 aaPredicted RBP13□□□□□ -0.33
SYNE2-221ENST00000556342 HOXC10Q9NYD6 342 aa13□□□□□ -0.33
SYNE2-221ENST00000556342 ATP11BQ9Y2G3 1177 aa13□□□□□ -0.33
SYNE2-221ENST00000556342 MYH1P12882 1939 aa13□□□□□ -0.33
SYNE2-221ENST00000556342 EYSQ5T1H1 3165 aa12.99□□□□□ -0.33
SYNE2-221ENST00000556342 MAGEB6P1A0A0J9YX57 407 aa12.99□□□□□ -0.33
SYNE2-221ENST00000556342 TRIM6-TRIM34B2RNG4 842 aa12.99□□□□□ -0.33
SYNE2-221ENST00000556342 SEPT4O43236 478 aa12.99□□□□□ -0.33
SYNE2-221ENST00000556342 POLR3DP05423 398 aaPredicted RBP12.99□□□□□ -0.33
SYNE2-221ENST00000556342 ERCC3P19447 782 aa12.99□□□□□ -0.33
SYNE2-221ENST00000556342 COG2Q14746 738 aa12.99□□□□□ -0.33
SYNE2-221ENST00000556342 ZNF697Q5TEC3 545 aa12.99□□□□□ -0.33
SYNE2-221ENST00000556342 AACSQ86V21 672 aa12.99□□□□□ -0.33
SYNE2-221ENST00000556342 FTSJ3Q8IY81 847 aaKnown RBP12.99□□□□□ -0.33
SYNE2-221ENST00000556342 ARRDC4Q8NCT1 418 aa12.99□□□□□ -0.33
SYNE2-221ENST00000556342 SHCBP1Q8NEM2 672 aa12.99□□□□□ -0.33
SYNE2-221ENST00000556342 SPATC1LQ9H0A9 340 aa12.99□□□□□ -0.33
SYNE2-221ENST00000556342 MCM9Q9NXL9 1143 aa12.99□□□□□ -0.33
SYNE2-221ENST00000556342 KBTBD13C9JR72 458 aa12.98□□□□□ -0.33
SYNE2-221ENST00000556342 MPHOSPH10O00566 681 aaKnown RBP12.98□□□□□ -0.33
SYNE2-221ENST00000556342 COBLO75128 1261 aa12.98□□□□□ -0.33
SYNE2-221ENST00000556342 ANO1Q5XXA6 986 aa12.98□□□□□ -0.33
SYNE2-221ENST00000556342 SLC39A5Q6ZMH5 540 aa12.98□□□□□ -0.33
SYNE2-221ENST00000556342 ITPRIPQ8IWB1 547 aa12.98□□□□□ -0.33
SYNE2-221ENST00000556342 CRNKL1Q9BZJ0 848 aaKnown RBP12.98□□□□□ -0.33
SYNE2-221ENST00000556342 TANGO6Q9C0B7 1094 aa12.98□□□□□ -0.33
SYNE2-221ENST00000556342 VCANP13611 3396 aa12.98□□□□□ -0.33
SYNE2-221ENST00000556342 ZNF236Q9UL36 1845 aa12.97□□□□□ -0.33
SYNE2-221ENST00000556342 RLBP1P12271 317 aa12.97□□□□□ -0.33
SYNE2-221ENST00000556342 PDE6AP16499 860 aa12.97□□□□□ -0.33
SYNE2-221ENST00000556342 SNX17Q15036 470 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms