RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 CPVLQ9H3G5 476 aa18.21■□□□□ 0.51
CUX1-213ENST00000549414 HOMER2Q9NSB8 354 aa18.21■□□□□ 0.51
CUX1-213ENST00000549414 NMT2O60551 498 aa18.21■□□□□ 0.51
CUX1-213ENST00000549414 RFX5P48382 616 aaPredicted RBP18.21■□□□□ 0.51
CUX1-213ENST00000549414 BSDC1Q9NW68 430 aaPredicted RBP18.21■□□□□ 0.51
CUX1-213ENST00000549414 RPAP1Q9BWH6 1393 aaPredicted RBP18.21■□□□□ 0.5
CUX1-213ENST00000549414 SPATA31D1Q6ZQQ2 1576 aa18.2■□□□□ 0.5
CUX1-213ENST00000549414 GSTTP1A0A1W2PQM5 241 aa18.2■□□□□ 0.5
CUX1-213ENST00000549414 TRIM28Q13263 835 aaKnown RBP18.2■□□□□ 0.5
CUX1-213ENST00000549414 USP17L2Q6R6M4 530 aa18.2■□□□□ 0.5
CUX1-213ENST00000549414 CYP26C1Q6V0L0 522 aa18.2■□□□□ 0.5
CUX1-213ENST00000549414 CERS3Q8IU89 383 aa18.2■□□□□ 0.5
CUX1-213ENST00000549414 NLRC4Q9NPP4 1024 aa18.2■□□□□ 0.5
CUX1-213ENST00000549414 FAM107BQ9H098 131 aa18.2■□□□□ 0.5
CUX1-213ENST00000549414 TBC1D9BQ66K14 1250 aa18.2■□□□□ 0.5
CUX1-213ENST00000549414 KIAA1524Q8TCG1 905 aa18.2■□□□□ 0.5
CUX1-213ENST00000549414 TBC1D5Q92609 795 aa18.2■□□□□ 0.5
CUX1-213ENST00000549414 RGS22Q8NE09 1264 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 KCNJ18B7U540 433 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 RXRBP28702 533 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 MORC3Q14149 939 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 KCNJ12Q14500 433 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 ERCC6LQ2NKX8 1250 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 NEK8Q86SG6 692 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 SEPT12Q8IYM1 358 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 DBNDD1Q9H9R9 158 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 LEMD3Q9Y2U8 911 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 OR52Z1P0C646 297 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 CASP1P29466 404 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 VTI1AQ96AJ9 217 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 CDHR2Q9BYE9 1310 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 TMEM110-MUSTN1A8MSY1 372 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 SLC44A5Q8NCS7 719 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 TCHPQ9BT92 498 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 ZMYND15Q9H091 742 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 SLC39A2Q9NP94 309 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 USP32Q8NFA0 1604 aa18.19■□□□□ 0.5
CUX1-213ENST00000549414 SEMA3EO15041 775 aa18.18■□□□□ 0.5
CUX1-213ENST00000549414 ALDH1B1P30837 517 aa18.18■□□□□ 0.5
CUX1-213ENST00000549414 SLC16A2P36021 539 aa18.18■□□□□ 0.5
CUX1-213ENST00000549414 NAPGQ99747 312 aaPredicted RBP18.18■□□□□ 0.5
CUX1-213ENST00000549414 ARHGEF10LQ9HCE6 1279 aa18.18■□□□□ 0.5
CUX1-213ENST00000549414 GSG1L2A8MUP6 293 aa18.18■□□□□ 0.5
CUX1-213ENST00000549414 TMTC1Q8IUR5 882 aa18.18■□□□□ 0.5
CUX1-213ENST00000549414 KRT27Q7Z3Y8 459 aa18.18■□□□□ 0.5
CUX1-213ENST00000549414 OXER1Q8TDS5 423 aa18.18■□□□□ 0.5
CUX1-213ENST00000549414 PSTPIP2Q9H939 334 aa18.18■□□□□ 0.5
CUX1-213ENST00000549414 CPDO75976 1380 aa18.18■□□□□ 0.5
CUX1-213ENST00000549414 CETN2P41208 172 aa18.17■□□□□ 0.5
CUX1-213ENST00000549414 SPICE1Q8N0Z3 855 aa18.17■□□□□ 0.5
CUX1-213ENST00000549414 KIFC2Q96AC6 838 aa18.17■□□□□ 0.5
CUX1-213ENST00000549414 SAMSN1Q9NSI8 373 aaKnown RBP18.17■□□□□ 0.5
CUX1-213ENST00000549414 CETN3O15182 167 aa18.17■□□□□ 0.5
CUX1-213ENST00000549414 RPN1P04843 607 aaKnown RBP18.17■□□□□ 0.5
CUX1-213ENST00000549414 SEPT7Q16181 437 aaKnown RBP18.17■□□□□ 0.5
CUX1-213ENST00000549414 HAUS3Q68CZ6 603 aa18.17■□□□□ 0.5
CUX1-213ENST00000549414 BACH1O14867 736 aa18.17■□□□□ 0.5
CUX1-213ENST00000549414 CLEC4GQ6UXB4 293 aa18.17■□□□□ 0.5
CUX1-213ENST00000549414 IFT81Q8WYA0 676 aa18.17■□□□□ 0.5
CUX1-213ENST00000549414 COL15A1P39059 1388 aa18.17■□□□□ 0.5
CUX1-213ENST00000549414 GPR162Q16538 588 aa18.17■□□□□ 0.5
CUX1-213ENST00000549414 PRR16Q569H4 304 aa18.17■□□□□ 0.5
CUX1-213ENST00000549414 SPATA1Q5VX52 437 aa18.17■□□□□ 0.5
CUX1-213ENST00000549414 JAKMIP2Q96AA8 810 aa18.17■□□□□ 0.5
CUX1-213ENST00000549414 LY9Q9HBG7 655 aa18.17■□□□□ 0.5
CUX1-213ENST00000549414 MAN1B1Q9UKM7 699 aa18.17■□□□□ 0.5
CUX1-213ENST00000549414 TCP10L2B9ZVM9 353 aa18.16■□□□□ 0.5
CUX1-213ENST00000549414 DNAJC21Q5F1R6 531 aaKnown RBP18.16■□□□□ 0.5
CUX1-213ENST00000549414 C2CD5Q86YS7 1000 aa18.16■□□□□ 0.5
CUX1-213ENST00000549414 COA7Q96BR5 231 aa18.16■□□□□ 0.5
CUX1-213ENST00000549414 PCDHA12Q9UN75 941 aa18.16■□□□□ 0.5
CUX1-213ENST00000549414 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.16■□□□□ 0.5
CUX1-213ENST00000549414 MYOM1P52179 1685 aa18.16■□□□□ 0.5
CUX1-213ENST00000549414 GTPBP6O43824 516 aaPredicted RBP18.16■□□□□ 0.5
CUX1-213ENST00000549414 ETF1P62495 437 aaKnown RBP18.16■□□□□ 0.5
CUX1-213ENST00000549414 TSGA10IPQ3SY00 556 aa18.16■□□□□ 0.5
CUX1-213ENST00000549414 NSMFQ6X4W1 530 aa18.16■□□□□ 0.5
CUX1-213ENST00000549414 PPP2R2CQ9Y2T4 447 aa18.16■□□□□ 0.5
CUX1-213ENST00000549414 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.16■□□□□ 0.5
CUX1-213ENST00000549414 PCP11498 1178 aaKnown RBP18.16■□□□□ 0.5
CUX1-213ENST00000549414 MYCLP12524 364 aaPredicted RBP18.16■□□□□ 0.5
CUX1-213ENST00000549414 TRIM14Q14142 442 aa18.16■□□□□ 0.5
CUX1-213ENST00000549414 KCTD1Q719H9 257 aa18.16■□□□□ 0.5
CUX1-213ENST00000549414 PIGSQ96S52 555 aa18.16■□□□□ 0.5
CUX1-213ENST00000549414 DLGAP5Q15398 846 aa18.15■□□□□ 0.5
CUX1-213ENST00000549414 IFI16Q16666 785 aaKnown RBP18.15■□□□□ 0.5
CUX1-213ENST00000549414 CERKLQ49MI3 558 aaPredicted RBP18.15■□□□□ 0.5
CUX1-213ENST00000549414 KIF28PB7ZC32 967 aa18.15■□□□□ 0.5
CUX1-213ENST00000549414 RPS6KA4O75676 772 aa18.15■□□□□ 0.5
CUX1-213ENST00000549414 RPL13P26373 211 aaKnown RBP18.15■□□□□ 0.5
CUX1-213ENST00000549414 GJC1P36383 396 aa18.15■□□□□ 0.5
CUX1-213ENST00000549414 EXOSC10Q01780 885 aaKnown RBP18.15■□□□□ 0.5
CUX1-213ENST00000549414 TYW1BQ6NUM6 668 aa18.15■□□□□ 0.5
CUX1-213ENST00000549414 TRIML1Q8N9V2 468 aa18.15■□□□□ 0.5
CUX1-213ENST00000549414 DYDC1Q8WWB3 177 aa18.15■□□□□ 0.5
CUX1-213ENST00000549414 GTPBP4Q9BZE4 634 aaKnown RBP18.15■□□□□ 0.5
CUX1-213ENST00000549414 DNM3Q9UQ16 869 aa18.15■□□□□ 0.5
CUX1-213ENST00000549414 NEURL4Q96JN8 1562 aa18.15■□□□□ 0.5
CUX1-213ENST00000549414 RRAGAQ7L523 313 aa18.15■□□□□ 0.5
CUX1-213ENST00000549414 ENAHQ8N8S7 591 aaPredicted RBP18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms