RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 FERMT3Q86UX7 667 aa11.88□□□□□ -0.51
CHFR-219ENST00000541341 BRI3BPQ8WY22 251 aa11.88□□□□□ -0.51
CHFR-219ENST00000541341 TSC1Q92574 1164 aa11.88□□□□□ -0.51
CHFR-219ENST00000541341 ERCC4Q92889 916 aaPredicted RBP11.88□□□□□ -0.51
CHFR-219ENST00000541341 ZKSCAN4Q969J2 545 aaPredicted RBP11.88□□□□□ -0.51
CHFR-219ENST00000541341 PGBD1Q96JS3 809 aa11.88□□□□□ -0.51
CHFR-219ENST00000541341 AGXT2Q9BYV1 514 aa11.88□□□□□ -0.51
CHFR-219ENST00000541341 POLR3EQ9NVU0 708 aa11.88□□□□□ -0.51
CHFR-219ENST00000541341 KIAA1468Q9P260 1216 aa11.88□□□□□ -0.51
CHFR-219ENST00000541341 TFIP11Q9UBB9 837 aaKnown RBP11.88□□□□□ -0.51
CHFR-219ENST00000541341 ARHGAP6O43182 974 aa11.87□□□□□ -0.51
CHFR-219ENST00000541341 CDKL5O76039 1030 aa11.87□□□□□ -0.51
CHFR-219ENST00000541341 SLC3A2P08195 630 aaKnown RBP11.87□□□□□ -0.51
CHFR-219ENST00000541341 IFIT1P09914 478 aaKnown RBP11.87□□□□□ -0.51
CHFR-219ENST00000541341 MCM3P25205 808 aa11.87□□□□□ -0.51
CHFR-219ENST00000541341 BCAMP50895 628 aa11.87□□□□□ -0.51
CHFR-219ENST00000541341 TIMM10P62072 90 aa11.87□□□□□ -0.51
CHFR-219ENST00000541341 CPLX2Q6PUV4 134 aaKnown RBP11.87□□□□□ -0.51
CHFR-219ENST00000541341 FSIP1Q8NA03 581 aa11.87□□□□□ -0.51
CHFR-219ENST00000541341 ENGASEQ8NFI3 743 aa11.87□□□□□ -0.51
CHFR-219ENST00000541341 MS4A4AQ96JQ5 239 aa11.87□□□□□ -0.51
CHFR-219ENST00000541341 ZNF512BQ96KM6 892 aaPredicted RBP11.87□□□□□ -0.51
CHFR-219ENST00000541341 ARHGAP39Q9C0H5 1083 aa11.87□□□□□ -0.51
CHFR-219ENST00000541341 IL25Q9H293 177 aa11.87□□□□□ -0.51
CHFR-219ENST00000541341 DBNLQ9UJU6 430 aaKnown RBP11.87□□□□□ -0.51
CHFR-219ENST00000541341 SERPINA10Q9UK55 444 aa11.87□□□□□ -0.51
CHFR-219ENST00000541341 PTCH2Q9Y6C5 1203 aa11.87□□□□□ -0.51
CHFR-219ENST00000541341 EVCP57679 992 aa11.86□□□□□ -0.51
CHFR-219ENST00000541341 MAP3K9P80192 1104 aa11.86□□□□□ -0.51
CHFR-219ENST00000541341 TNFAIP1Q13829 316 aa11.86□□□□□ -0.51
CHFR-219ENST00000541341 BRD3Q15059 726 aa11.86□□□□□ -0.51
CHFR-219ENST00000541341 STK38Q15208 465 aa11.86□□□□□ -0.51
CHFR-219ENST00000541341 FBXO38Q6PIJ6 1188 aa11.86□□□□□ -0.51
CHFR-219ENST00000541341 Q6ZUG5 572 aa11.86□□□□□ -0.51
CHFR-219ENST00000541341 MIGA2Q7L4E1 593 aa11.86□□□□□ -0.51
CHFR-219ENST00000541341 FBXO33Q7Z6M2 555 aa11.86□□□□□ -0.51
CHFR-219ENST00000541341 DHX40Q8IX18 779 aaKnown RBP11.86□□□□□ -0.51
CHFR-219ENST00000541341 XAGE2Q96GT9 111 aa11.86□□□□□ -0.51
CHFR-219ENST00000541341 NAA15Q9BXJ9 866 aaKnown RBP11.86□□□□□ -0.51
CHFR-219ENST00000541341 FAM107BQ9H098 131 aa11.86□□□□□ -0.51
CHFR-219ENST00000541341 ARFGAP3Q9NP61 516 aa11.86□□□□□ -0.51
CHFR-219ENST00000541341 NRBP1Q9UHY1 535 aa11.86□□□□□ -0.51
CHFR-219ENST00000541341 CSADQ9Y600 493 aa11.86□□□□□ -0.51
CHFR-219ENST00000541341 PTPRFP10586 1907 aa11.86□□□□□ -0.51
CHFR-219ENST00000541341 ATAD5Q96QE3 1844 aa11.86□□□□□ -0.51
CHFR-219ENST00000541341 PDS5AQ29RF7 1337 aaKnown RBP11.86□□□□□ -0.51
CHFR-219ENST00000541341 TULP2O00295 520 aa11.85□□□□□ -0.51
CHFR-219ENST00000541341 ZFYP08048 801 aaPredicted RBP11.85□□□□□ -0.51
CHFR-219ENST00000541341 CMA1P23946 247 aa11.85□□□□□ -0.51
CHFR-219ENST00000541341 ARID4AP29374 1257 aaPredicted RBP11.85□□□□□ -0.51
CHFR-219ENST00000541341 TNNI2P48788 182 aa11.85□□□□□ -0.51
CHFR-219ENST00000541341 ST3GAL1Q11201 340 aa11.85□□□□□ -0.51
CHFR-219ENST00000541341 CCDC144BQ3MJ40 725 aa11.85□□□□□ -0.51
CHFR-219ENST00000541341 KANK3Q6NY19 840 aa11.85□□□□□ -0.51
CHFR-219ENST00000541341 CCDC144CPQ8IYA2 1237 aa11.85□□□□□ -0.51
CHFR-219ENST00000541341 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.85□□□□□ -0.51
CHFR-219ENST00000541341 SH3TC2Q8TF17 1288 aa11.85□□□□□ -0.51
CHFR-219ENST00000541341 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.85□□□□□ -0.51
CHFR-219ENST00000541341 RABGGTAQ92696 567 aa11.85□□□□□ -0.51
CHFR-219ENST00000541341 EXOC4Q96A65 974 aa11.85□□□□□ -0.51
CHFR-219ENST00000541341 PPP1R13BQ96KQ4 1090 aa11.85□□□□□ -0.51
CHFR-219ENST00000541341 WRNIP1Q96S55 665 aa11.85□□□□□ -0.51
CHFR-219ENST00000541341 DBNDD2Q9BQY9 259 aa11.85□□□□□ -0.51
CHFR-219ENST00000541341 TLR7Q9NYK1 1049 aaKnown RBP11.85□□□□□ -0.51
CHFR-219ENST00000541341 TESPA1A2RU30 521 aaPredicted RBP11.84□□□□□ -0.51
CHFR-219ENST00000541341 SEMA3EO15041 775 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 STX10O60499 249 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 SMC2O95347 1197 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 ADORA1P30542 326 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 TCP10Q12799 353 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 ELF2Q15723 593 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 SLC4A8Q2Y0W8 1093 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 SLC9C1Q4G0N8 1177 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 ARHGAP29Q52LW3 1261 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 CAVIN4Q5BKX8 364 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 CCDC102BQ68D86 513 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 FMR1NBQ8N0W7 255 aaPredicted RBP11.84□□□□□ -0.51
CHFR-219ENST00000541341 AOPEPQ8N6M6 819 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 TEKT1Q969V4 418 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 NEUROD6Q96NK8 337 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 HAUS7Q99871 368 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 CCDC8Q9H0W5 538 aaPredicted RBP11.84□□□□□ -0.51
CHFR-219ENST00000541341 ZFYVE28Q9HCC9 887 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 PCDH10Q9P2E7 1040 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 SNCAIPQ9Y6H5 919 aa11.84□□□□□ -0.51
CHFR-219ENST00000541341 PHIPQ8WWQ0 1821 aa11.83□□□□□ -0.51
CHFR-219ENST00000541341 CCDC151A5D8V7 595 aa11.83□□□□□ -0.52
CHFR-219ENST00000541341 PPP6R2O75170 966 aa11.83□□□□□ -0.52
CHFR-219ENST00000541341 PNMA6AP0CW24 399 aaPredicted RBP11.83□□□□□ -0.52
CHFR-219ENST00000541341 CPA1P15085 419 aa11.83□□□□□ -0.52
CHFR-219ENST00000541341 CASQ1P31415 396 aa11.83□□□□□ -0.52
CHFR-219ENST00000541341 GTF2A2P52657 109 aa11.83□□□□□ -0.52
CHFR-219ENST00000541341 MYL5Q02045 173 aa11.83□□□□□ -0.52
CHFR-219ENST00000541341 CEP112Q8N8E3 955 aa11.83□□□□□ -0.52
CHFR-219ENST00000541341 TRIML1Q8N9V2 468 aa11.83□□□□□ -0.52
CHFR-219ENST00000541341 KBTBD3Q8NAB2 608 aa11.83□□□□□ -0.52
CHFR-219ENST00000541341 NSUN7Q8NE18 718 aaKnown RBP11.83□□□□□ -0.52
CHFR-219ENST00000541341 GOLGA5Q8TBA6 731 aa11.83□□□□□ -0.52
CHFR-219ENST00000541341 HNRNPLLQ8WVV9 542 aaKnown RBP11.83□□□□□ -0.52
CHFR-219ENST00000541341 TMEM106CQ9BVX2 250 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms