RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 USP17L21D6R901 530 aa16.35■□□□□ 0.21
SS18-204ENST00000539244 SMIM22K7EJ46 135 aa16.35■□□□□ 0.21
SS18-204ENST00000539244 FCER1AP12319 257 aa16.35■□□□□ 0.21
SS18-204ENST00000539244 PLS1Q14651 629 aa16.35■□□□□ 0.21
SS18-204ENST00000539244 TMEM132BQ14DG7 1078 aa16.35■□□□□ 0.21
SS18-204ENST00000539244 RIOX2Q8IUF8 465 aa16.35■□□□□ 0.21
SS18-204ENST00000539244 AMOTL1Q8IY63 956 aa16.35■□□□□ 0.21
SS18-204ENST00000539244 KANSL2Q9H9L4 492 aa16.35■□□□□ 0.21
SS18-204ENST00000539244 ROBO3Q96MS0 1386 aa16.35■□□□□ 0.21
SS18-204ENST00000539244 GREB1LQ9C091 1923 aaPredicted RBP16.35■□□□□ 0.21
SS18-204ENST00000539244 CUL9Q8IWT3 2517 aa16.34■□□□□ 0.21
SS18-204ENST00000539244 EEF2P13639 858 aaKnown RBP16.34■□□□□ 0.21
SS18-204ENST00000539244 LRRC41Q15345 812 aa16.34■□□□□ 0.21
SS18-204ENST00000539244 PRAMEF19Q5SWL8 479 aa16.34■□□□□ 0.21
SS18-204ENST00000539244 ANO1Q5XXA6 986 aa16.34■□□□□ 0.21
SS18-204ENST00000539244 MIER1Q8N108 512 aa16.34■□□□□ 0.21
SS18-204ENST00000539244 GUCD1Q96NT3 240 aa16.34■□□□□ 0.21
SS18-204ENST00000539244 ATP11BQ9Y2G3 1177 aa16.34■□□□□ 0.21
SS18-204ENST00000539244 DIS3Q9Y2L1 958 aaKnown RBP16.34■□□□□ 0.21
SS18-204ENST00000539244 COG6Q9Y2V7 657 aa16.34■□□□□ 0.21
SS18-204ENST00000539244 PLXNA1Q9UIW2 1896 aa16.33■□□□□ 0.21
SS18-204ENST00000539244 CYP2D7A0A087X1C5 515 aa16.33■□□□□ 0.2
SS18-204ENST00000539244 FAM47AQ5JRC9 791 aa16.33■□□□□ 0.2
SS18-204ENST00000539244 CTR9Q6PD62 1173 aa16.33■□□□□ 0.2
SS18-204ENST00000539244 REPS2Q8NFH8 660 aa16.33■□□□□ 0.2
SS18-204ENST00000539244 DDRGK1Q96HY6 314 aa16.33■□□□□ 0.2
SS18-204ENST00000539244 CHMP4BQ9H444 224 aaKnown RBP16.33■□□□□ 0.2
SS18-204ENST00000539244 PPP1R9AQ9ULJ8 1098 aa16.33■□□□□ 0.2
SS18-204ENST00000539244 VWA5AO00534 786 aa16.32■□□□□ 0.2
SS18-204ENST00000539244 CHGBP05060 677 aa16.32■□□□□ 0.2
SS18-204ENST00000539244 COPB2P35606 906 aa16.32■□□□□ 0.2
SS18-204ENST00000539244 ADCYAP1R1P41586 468 aa16.32■□□□□ 0.2
SS18-204ENST00000539244 ZNF792Q3KQV3 632 aa16.32■□□□□ 0.2
SS18-204ENST00000539244 TRIM60Q495X7 471 aa16.32■□□□□ 0.2
SS18-204ENST00000539244 ZSCAN25Q6NSZ9 544 aa16.32■□□□□ 0.2
SS18-204ENST00000539244 MMP19Q99542 508 aa16.32■□□□□ 0.2
SS18-204ENST00000539244 PUS7LQ9H0K6 701 aaKnown RBP16.32■□□□□ 0.2
SS18-204ENST00000539244 GOPCQ9HD26 462 aa16.32■□□□□ 0.2
SS18-204ENST00000539244 PDLIM7Q9NR12 457 aa16.32■□□□□ 0.2
SS18-204ENST00000539244 FBXO28Q9NVF7 368 aa16.32■□□□□ 0.2
SS18-204ENST00000539244 ZNF214Q9UL59 606 aaPredicted RBP16.32■□□□□ 0.2
SS18-204ENST00000539244 PHF24Q9UPV7 400 aa16.32■□□□□ 0.2
SS18-204ENST00000539244 SLC4A4Q9Y6R1 1079 aa16.32■□□□□ 0.2
SS18-204ENST00000539244 STAT3P40763 770 aa16.31■□□□□ 0.2
SS18-204ENST00000539244 SHHQ15465 462 aa16.31■□□□□ 0.2
SS18-204ENST00000539244 TINF2Q9BSI4 451 aa16.31■□□□□ 0.2
SS18-204ENST00000539244 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.31■□□□□ 0.2
SS18-204ENST00000539244 ARPP21Q9UBL0 812 aaPredicted RBP16.31■□□□□ 0.2
SS18-204ENST00000539244 TRIM43BA6NCK2 446 aa16.3■□□□□ 0.2
SS18-204ENST00000539244 ZNF865P0CJ78 1059 aaPredicted RBP16.3■□□□□ 0.2
SS18-204ENST00000539244 RARBP10826 455 aa16.3■□□□□ 0.2
SS18-204ENST00000539244 KCTD2Q14681 263 aa16.3■□□□□ 0.2
SS18-204ENST00000539244 SBK1Q52WX2 424 aa16.3■□□□□ 0.2
SS18-204ENST00000539244 ZNF697Q5TEC3 545 aa16.3■□□□□ 0.2
SS18-204ENST00000539244 BADQ92934 168 aa16.3■□□□□ 0.2
SS18-204ENST00000539244 TRIM43Q96BQ3 446 aaPredicted RBP16.3■□□□□ 0.2
SS18-204ENST00000539244 XPNPEP3Q9NQH7 507 aa16.3■□□□□ 0.2
SS18-204ENST00000539244 PRDM5Q9NQX1 630 aaPredicted RBP16.3■□□□□ 0.2
SS18-204ENST00000539244 PGK2P07205 417 aa16.29■□□□□ 0.2
SS18-204ENST00000539244 C9orf50Q5SZB4 431 aa16.29■□□□□ 0.2
SS18-204ENST00000539244 FAM83BQ5T0W9 1011 aa16.29■□□□□ 0.2
SS18-204ENST00000539244 GIMAP6Q6P9H5 292 aa16.29■□□□□ 0.2
SS18-204ENST00000539244 SAMD1Q6SPF0 538 aaPredicted RBP16.29■□□□□ 0.2
SS18-204ENST00000539244 SH3RF1Q7Z6J0 888 aa16.29■□□□□ 0.2
SS18-204ENST00000539244 RNF180Q86T96 592 aa16.29■□□□□ 0.2
SS18-204ENST00000539244 MSL3Q8N5Y2 521 aaKnown RBP16.29■□□□□ 0.2
SS18-204ENST00000539244 STRBPQ96SI9 672 aaKnown RBP16.29■□□□□ 0.2
SS18-204ENST00000539244 LRRCC1Q9C099 1032 aa16.29■□□□□ 0.2
SS18-204ENST00000539244 CDH23Q9H251 3354 aa16.29■□□□□ 0.2
SS18-204ENST00000539244 EYSQ5T1H1 3165 aa16.29■□□□□ 0.2
SS18-204ENST00000539244 MYCNP04198 464 aaPredicted RBP16.28■□□□□ 0.2
SS18-204ENST00000539244 AKR1A1P14550 325 aa16.28■□□□□ 0.2
SS18-204ENST00000539244 RASA1P20936 1047 aa16.28■□□□□ 0.2
SS18-204ENST00000539244 SMAD3P84022 425 aaKnown RBP16.28■□□□□ 0.2
SS18-204ENST00000539244 TLE2Q04725 743 aa16.28■□□□□ 0.2
SS18-204ENST00000539244 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.28■□□□□ 0.2
SS18-204ENST00000539244 FERMT2Q96AC1 680 aa16.28■□□□□ 0.2
SS18-204ENST00000539244 BCL11AQ9H165 835 aa16.28■□□□□ 0.2
SS18-204ENST00000539244 NYAP2Q9P242 653 aa16.28■□□□□ 0.2
SS18-204ENST00000539244 TACC3Q9Y6A5 838 aa16.28■□□□□ 0.2
SS18-204ENST00000539244 GSG1L2A8MUP6 293 aa16.27■□□□□ 0.2
SS18-204ENST00000539244 ATP2A1O14983 1001 aa16.27■□□□□ 0.2
SS18-204ENST00000539244 ADAMTS4O75173 837 aa16.27■□□□□ 0.2
SS18-204ENST00000539244 CLTBP09497 229 aa16.27■□□□□ 0.2
SS18-204ENST00000539244 TAL1P17542 331 aaPredicted RBP16.27■□□□□ 0.2
SS18-204ENST00000539244 MAMDC4Q6UXC1 1216 aa16.27■□□□□ 0.2
SS18-204ENST00000539244 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.27■□□□□ 0.2
SS18-204ENST00000539244 SLF1Q9BQI6 1058 aa16.27■□□□□ 0.2
SS18-204ENST00000539244 TSEN34Q9BSV6 310 aaKnown RBP16.27■□□□□ 0.2
SS18-204ENST00000539244 TEX13BQ9BXU2 312 aa16.27■□□□□ 0.2
SS18-204ENST00000539244 SYNGAP1Q96PV0 1343 aa16.26■□□□□ 0.19
SS18-204ENST00000539244 DNAJC25-GNG10A0A024R161 153 aa16.26■□□□□ 0.19
SS18-204ENST00000539244 A0A1W2PQ45 241 aaPredicted RBP16.26■□□□□ 0.19
SS18-204ENST00000539244 A0A1W2PQY0 241 aa16.26■□□□□ 0.19
SS18-204ENST00000539244 KIAA0355O15063 1070 aa16.26■□□□□ 0.19
SS18-204ENST00000539244 PGK1P00558 417 aa16.26■□□□□ 0.19
SS18-204ENST00000539244 ITGB8P26012 769 aa16.26■□□□□ 0.19
SS18-204ENST00000539244 KBTBD3Q8NAB2 608 aa16.26■□□□□ 0.19
SS18-204ENST00000539244 FAM161BQ96MY7 647 aa16.26■□□□□ 0.19
SS18-204ENST00000539244 SEMA6BQ9H3T3 888 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms