RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SENP6Q9GZR1 1112 aaPredicted RBP13.63□□□□□ -0.23
VPS28-214ENST00000531032 COL6A3P12111 3177 aa13.63□□□□□ -0.23
VPS28-214ENST00000531032 SEPT4O43236 478 aa13.62□□□□□ -0.23
VPS28-214ENST00000531032 FCER1AP12319 257 aa13.62□□□□□ -0.23
VPS28-214ENST00000531032 SBK1Q52WX2 424 aa13.62□□□□□ -0.23
VPS28-214ENST00000531032 GIMAP6Q6P9H5 292 aa13.62□□□□□ -0.23
VPS28-214ENST00000531032 MAML3Q96JK9 1138 aa13.62□□□□□ -0.23
VPS28-214ENST00000531032 DCTPP1Q9H773 170 aa13.62□□□□□ -0.23
VPS28-214ENST00000531032 GOPCQ9HD26 462 aa13.62□□□□□ -0.23
VPS28-214ENST00000531032 ZNFX1Q9P2E3 1918 aaKnown RBP13.61□□□□□ -0.23
VPS28-214ENST00000531032 GSG1L2A8MUP6 293 aa13.61□□□□□ -0.23
VPS28-214ENST00000531032 VWA5AO00534 786 aa13.61□□□□□ -0.23
VPS28-214ENST00000531032 RIOX2Q8IUF8 465 aa13.61□□□□□ -0.23
VPS28-214ENST00000531032 ARRDC4Q8NCT1 418 aa13.61□□□□□ -0.23
VPS28-214ENST00000531032 APPBP2Q92624 585 aa13.61□□□□□ -0.23
VPS28-214ENST00000531032 OSBP2Q969R2 916 aa13.61□□□□□ -0.23
VPS28-214ENST00000531032 FBXO28Q9NVF7 368 aa13.61□□□□□ -0.23
VPS28-214ENST00000531032 ZNF214Q9UL59 606 aaPredicted RBP13.61□□□□□ -0.23
VPS28-214ENST00000531032 PPP1R9AQ9ULJ8 1098 aa13.61□□□□□ -0.23
VPS28-214ENST00000531032 LTBP2Q14767 1821 aa13.61□□□□□ -0.23
VPS28-214ENST00000531032 RASA1P20936 1047 aa13.6□□□□□ -0.23
VPS28-214ENST00000531032 ATN1P54259 1190 aaPredicted RBP13.6□□□□□ -0.23
VPS28-214ENST00000531032 MDM2Q00987 491 aaPredicted RBP13.6□□□□□ -0.23
VPS28-214ENST00000531032 FAM83BQ5T0W9 1011 aa13.6□□□□□ -0.23
VPS28-214ENST00000531032 GJC2Q5T442 439 aaPredicted RBP13.6□□□□□ -0.23
VPS28-214ENST00000531032 SAMD1Q6SPF0 538 aaPredicted RBP13.6□□□□□ -0.23
VPS28-214ENST00000531032 REPS2Q8NFH8 660 aa13.6□□□□□ -0.23
VPS28-214ENST00000531032 GPATCH3Q96I76 525 aa13.6□□□□□ -0.23
VPS28-214ENST00000531032 NRBP1Q9UHY1 535 aa13.6□□□□□ -0.23
VPS28-214ENST00000531032 PLXNA1Q9UIW2 1896 aa13.6□□□□□ -0.23
VPS28-214ENST00000531032 KBTBD13C9JR72 458 aa13.59□□□□□ -0.23
VPS28-214ENST00000531032 RNF113AO15541 343 aaKnown RBP13.59□□□□□ -0.23
VPS28-214ENST00000531032 ZFYP08048 801 aaPredicted RBP13.59□□□□□ -0.23
VPS28-214ENST00000531032 COPB2P35606 906 aa13.59□□□□□ -0.23
VPS28-214ENST00000531032 STAT3P40763 770 aa13.59□□□□□ -0.23
VPS28-214ENST00000531032 RTP1P59025 263 aa13.59□□□□□ -0.23
VPS28-214ENST00000531032 PRAMEF19Q5SWL8 479 aa13.59□□□□□ -0.23
VPS28-214ENST00000531032 ANO1Q5XXA6 986 aa13.59□□□□□ -0.23
VPS28-214ENST00000531032 TSHZ3Q63HK5 1081 aa13.59□□□□□ -0.23
VPS28-214ENST00000531032 MMP19Q99542 508 aa13.59□□□□□ -0.23
VPS28-214ENST00000531032 EPB41L4AQ9HCS5 686 aaPredicted RBP13.59□□□□□ -0.23
VPS28-214ENST00000531032 NYAP2Q9P242 653 aa13.59□□□□□ -0.23
VPS28-214ENST00000531032 DIS3Q9Y2L1 958 aaKnown RBP13.59□□□□□ -0.23
VPS28-214ENST00000531032 IGKV6D-41A0A0C4DH26 115 aa13.58□□□□□ -0.24
VPS28-214ENST00000531032 GPAA1O43292 621 aa13.58□□□□□ -0.24
VPS28-214ENST00000531032 RAD21O60216 631 aa13.58□□□□□ -0.24
VPS28-214ENST00000531032 PGK2P07205 417 aa13.58□□□□□ -0.24
VPS28-214ENST00000531032 GNAT2P19087 354 aa13.58□□□□□ -0.24
VPS28-214ENST00000531032 KCTD2Q14681 263 aa13.58□□□□□ -0.24
VPS28-214ENST00000531032 SNX17Q15036 470 aa13.58□□□□□ -0.24
VPS28-214ENST00000531032 LRRC41Q15345 812 aa13.58□□□□□ -0.24
VPS28-214ENST00000531032 ZNF792Q3KQV3 632 aa13.58□□□□□ -0.24
VPS28-214ENST00000531032 FAM47AQ5JRC9 791 aa13.58□□□□□ -0.24
VPS28-214ENST00000531032 SLC39A5Q6ZMH5 540 aa13.58□□□□□ -0.24
VPS28-214ENST00000531032 DEFB123Q8N688 67 aa13.58□□□□□ -0.24
VPS28-214ENST00000531032 MKNK2Q9HBH9 465 aa13.58□□□□□ -0.24
VPS28-214ENST00000531032 MYH4Q9Y623 1939 aa13.57□□□□□ -0.24
VPS28-214ENST00000531032 MINDY4BA8MYZ0 360 aa13.57□□□□□ -0.24
VPS28-214ENST00000531032 F5H6K3 240 aa13.57□□□□□ -0.24
VPS28-214ENST00000531032 NDUFB10O96000 172 aa13.57□□□□□ -0.24
VPS28-214ENST00000531032 KLRC3Q07444 240 aa13.57□□□□□ -0.24
VPS28-214ENST00000531032 Q7L0L9 218 aa13.57□□□□□ -0.24
VPS28-214ENST00000531032 NUP88Q99567 741 aaPredicted RBP13.57□□□□□ -0.24
VPS28-214ENST00000531032 LBHD1Q9BQE6 289 aaPredicted RBP13.57□□□□□ -0.24
VPS28-214ENST00000531032 SLF1Q9BQI6 1058 aa13.57□□□□□ -0.24
VPS28-214ENST00000531032 TINF2Q9BSI4 451 aa13.57□□□□□ -0.24
VPS28-214ENST00000531032 TEX13BQ9BXU2 312 aa13.57□□□□□ -0.24
VPS28-214ENST00000531032 PRKAG2Q9UGJ0 569 aa13.57□□□□□ -0.24
VPS28-214ENST00000531032 SYNPO2Q9UMS6 1093 aa13.57□□□□□ -0.24
VPS28-214ENST00000531032 TTC41PQ6P2S7 1318 aa13.57□□□□□ -0.24
VPS28-214ENST00000531032 SMCHD1A6NHR9 2005 aa13.56□□□□□ -0.24
VPS28-214ENST00000531032 LAMA2P24043 3122 aaKnown RBP13.56□□□□□ -0.24
VPS28-214ENST00000531032 M0R2C6 588 aa13.56□□□□□ -0.24
VPS28-214ENST00000531032 ATP2A1O14983 1001 aa13.56□□□□□ -0.24
VPS28-214ENST00000531032 TDO2P48775 406 aa13.56□□□□□ -0.24
VPS28-214ENST00000531032 C1orf53Q5VUE5 145 aa13.56□□□□□ -0.24
VPS28-214ENST00000531032 STK11IPQ8N1F8 1099 aa13.56□□□□□ -0.24
VPS28-214ENST00000531032 ZNF287Q9HBT7 754 aa13.56□□□□□ -0.24
VPS28-214ENST00000531032 XPNPEP3Q9NQH7 507 aa13.56□□□□□ -0.24
VPS28-214ENST00000531032 MTMR10Q9NXD2 777 aa13.56□□□□□ -0.24
VPS28-214ENST00000531032 ATP11BQ9Y2G3 1177 aa13.56□□□□□ -0.24
VPS28-214ENST00000531032 PLIN4Q96Q06 1357 aa13.56□□□□□ -0.24
VPS28-214ENST00000531032 PATL2C9JE40 543 aaKnown RBP13.55□□□□□ -0.24
VPS28-214ENST00000531032 MYCNP04198 464 aaPredicted RBP13.55□□□□□ -0.24
VPS28-214ENST00000531032 ZNF865P0CJ78 1059 aaPredicted RBP13.55□□□□□ -0.24
VPS28-214ENST00000531032 RARBP10826 455 aa13.55□□□□□ -0.24
VPS28-214ENST00000531032 TAL1P17542 331 aaPredicted RBP13.55□□□□□ -0.24
VPS28-214ENST00000531032 ADCYAP1R1P41586 468 aa13.55□□□□□ -0.24
VPS28-214ENST00000531032 LRRFIP1Q32MZ4 808 aaKnown RBP13.55□□□□□ -0.24
VPS28-214ENST00000531032 TRIM60Q495X7 471 aa13.55□□□□□ -0.24
VPS28-214ENST00000531032 SNRNP48Q6IEG0 339 aaKnown RBP13.55□□□□□ -0.24
VPS28-214ENST00000531032 IFNL3Q8IZI9 196 aa13.55□□□□□ -0.24
VPS28-214ENST00000531032 MSL3Q8N5Y2 521 aaKnown RBP13.55□□□□□ -0.24
VPS28-214ENST00000531032 PRPF38AQ8NAV1 312 aaKnown RBP13.55□□□□□ -0.24
VPS28-214ENST00000531032 SLC17A8Q8NDX2 589 aa13.55□□□□□ -0.24
VPS28-214ENST00000531032 PI4K2BQ8TCG2 481 aa13.55□□□□□ -0.24
VPS28-214ENST00000531032 MKL1Q969V6 931 aa13.55□□□□□ -0.24
VPS28-214ENST00000531032 CEP95Q96GE4 821 aa13.55□□□□□ -0.24
VPS28-214ENST00000531032 MTMR4Q9NYA4 1195 aa13.55□□□□□ -0.24
VPS28-214ENST00000531032 CLIP2Q9UDT6 1046 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms