RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 GJD2Q9UKL4 321 aa17.9■□□□□ 0.46
LIMS1-212ENST00000474038 PLXNB2O15031 1838 aa17.9■□□□□ 0.46
LIMS1-212ENST00000474038 NMT2O60551 498 aa17.89■□□□□ 0.45
LIMS1-212ENST00000474038 TTLL1O95922 423 aa17.89■□□□□ 0.45
LIMS1-212ENST00000474038 IMMTQ16891 758 aaKnown RBP17.89■□□□□ 0.45
LIMS1-212ENST00000474038 NKX2-3Q8TAU0 364 aa17.89■□□□□ 0.45
LIMS1-212ENST00000474038 ESYT1Q9BSJ8 1104 aa17.89■□□□□ 0.45
LIMS1-212ENST00000474038 PORCNQ9H237 461 aa17.89■□□□□ 0.45
LIMS1-212ENST00000474038 RNF41Q9H4P4 317 aaPredicted RBP17.89■□□□□ 0.45
LIMS1-212ENST00000474038 F5H6K3 240 aa17.88■□□□□ 0.45
LIMS1-212ENST00000474038 WDR46O15213 610 aaKnown RBP17.88■□□□□ 0.45
LIMS1-212ENST00000474038 CNMDO75829 334 aa17.88■□□□□ 0.45
LIMS1-212ENST00000474038 GJB1P08034 283 aa17.88■□□□□ 0.45
LIMS1-212ENST00000474038 KLRC3Q07444 240 aa17.88■□□□□ 0.45
LIMS1-212ENST00000474038 GTF3C2Q8WUA4 911 aaPredicted RBP17.88■□□□□ 0.45
LIMS1-212ENST00000474038 TANGO6Q9C0B7 1094 aa17.88■□□□□ 0.45
LIMS1-212ENST00000474038 NEDD4P46934 1319 aa17.88■□□□□ 0.45
LIMS1-212ENST00000474038 SPDYE16A6NNV3 312 aaPredicted RBP17.87■□□□□ 0.45
LIMS1-212ENST00000474038 RAD21O60216 631 aa17.87■□□□□ 0.45
LIMS1-212ENST00000474038 CYP2B6P20813 491 aa17.87■□□□□ 0.45
LIMS1-212ENST00000474038 GJA8P48165 433 aa17.87■□□□□ 0.45
LIMS1-212ENST00000474038 COG2Q14746 738 aa17.87■□□□□ 0.45
LIMS1-212ENST00000474038 LBX2Q6XYB7 198 aa17.87■□□□□ 0.45
LIMS1-212ENST00000474038 LRRC47Q8N1G4 583 aaKnown RBP17.87■□□□□ 0.45
LIMS1-212ENST00000474038 MAP4K1Q92918 833 aa17.87■□□□□ 0.45
LIMS1-212ENST00000474038 SYNPO2Q9UMS6 1093 aa17.87■□□□□ 0.45
LIMS1-212ENST00000474038 U3KPZ7 1027 aaPredicted RBP17.87■□□□□ 0.45
LIMS1-212ENST00000474038 ZNFX1Q9P2E3 1918 aaKnown RBP17.87■□□□□ 0.45
LIMS1-212ENST00000474038 CDC45O75419 566 aa17.86■□□□□ 0.45
LIMS1-212ENST00000474038 NDUFB10O96000 172 aa17.86■□□□□ 0.45
LIMS1-212ENST00000474038 NOVP48745 357 aa17.86■□□□□ 0.45
LIMS1-212ENST00000474038 TRIM32Q13049 653 aa17.86■□□□□ 0.45
LIMS1-212ENST00000474038 PPP4R3BQ5MIZ7 849 aa17.86■□□□□ 0.45
LIMS1-212ENST00000474038 FAM83BQ5T0W9 1011 aa17.86■□□□□ 0.45
LIMS1-212ENST00000474038 CCAR1Q8IX12 1150 aaKnown RBP17.86■□□□□ 0.45
LIMS1-212ENST00000474038 U2AF1L4Q8WU68 220 aaKnown RBP17.86■□□□□ 0.45
LIMS1-212ENST00000474038 TCP11L1Q9NUJ3 509 aa17.86■□□□□ 0.45
LIMS1-212ENST00000474038 HOXC10Q9NYD6 342 aa17.86■□□□□ 0.45
LIMS1-212ENST00000474038 STX8Q9UNK0 236 aa17.86■□□□□ 0.45
LIMS1-212ENST00000474038 RABGAP1Q9Y3P9 1069 aa17.86■□□□□ 0.45
LIMS1-212ENST00000474038 FLOT1O75955 427 aa17.85■□□□□ 0.45
LIMS1-212ENST00000474038 MAPK4P31152 587 aa17.85■□□□□ 0.45
LIMS1-212ENST00000474038 DSG3P32926 999 aa17.85■□□□□ 0.45
LIMS1-212ENST00000474038 KIAA1211Q6ZU35 1233 aa17.85■□□□□ 0.45
LIMS1-212ENST00000474038 GPR142Q7Z601 462 aa17.85■□□□□ 0.45
LIMS1-212ENST00000474038 GMCL1P1Q8NEA9 526 aa17.85■□□□□ 0.45
LIMS1-212ENST00000474038 TRIB2Q92519 343 aa17.85■□□□□ 0.45
LIMS1-212ENST00000474038 ESR2Q92731 530 aa17.85■□□□□ 0.45
LIMS1-212ENST00000474038 NUP88Q99567 741 aaPredicted RBP17.85■□□□□ 0.45
LIMS1-212ENST00000474038 NUDT12Q9BQG2 462 aa17.85■□□□□ 0.45
LIMS1-212ENST00000474038 LSG1Q9H089 658 aaKnown RBP17.85■□□□□ 0.45
LIMS1-212ENST00000474038 BTBD7Q9P203 1132 aa17.85■□□□□ 0.45
LIMS1-212ENST00000474038 B4E1Z4 1266 aa17.84■□□□□ 0.45
LIMS1-212ENST00000474038 HMGCRP04035 888 aa17.84■□□□□ 0.45
LIMS1-212ENST00000474038 CYP21A2P08686 494 aa17.84■□□□□ 0.45
LIMS1-212ENST00000474038 PLEKHH3Q7Z736 793 aa17.84■□□□□ 0.45
LIMS1-212ENST00000474038 SOCS4Q8WXH5 440 aa17.84■□□□□ 0.45
LIMS1-212ENST00000474038 DEFB118Q96PH6 123 aa17.84■□□□□ 0.45
LIMS1-212ENST00000474038 FBXO28Q9NVF7 368 aa17.84■□□□□ 0.45
LIMS1-212ENST00000474038 RBM8AQ9Y5S9 174 aaKnown RBP17.84■□□□□ 0.45
LIMS1-212ENST00000474038 KDM4AO75164 1064 aa17.83■□□□□ 0.44
LIMS1-212ENST00000474038 SGPL1O95470 568 aa17.83■□□□□ 0.44
LIMS1-212ENST00000474038 NT5C2P49902 561 aa17.83■□□□□ 0.44
LIMS1-212ENST00000474038 WDR78Q5VTH9 848 aa17.83■□□□□ 0.44
LIMS1-212ENST00000474038 SLFN13Q68D06 897 aa17.83■□□□□ 0.44
LIMS1-212ENST00000474038 RCSD1Q6JBY9 416 aa17.83■□□□□ 0.44
LIMS1-212ENST00000474038 ATG4CQ96DT6 458 aa17.83■□□□□ 0.44
LIMS1-212ENST00000474038 KRT23Q9C075 422 aa17.83■□□□□ 0.44
LIMS1-212ENST00000474038 CNNM2Q9H8M5 875 aa17.83■□□□□ 0.44
LIMS1-212ENST00000474038 CWC22Q9HCG8 908 aaKnown RBP17.83■□□□□ 0.44
LIMS1-212ENST00000474038 PAK6Q9NQU5 681 aaPredicted RBP17.83■□□□□ 0.44
LIMS1-212ENST00000474038 TAF6LQ9Y6J9 622 aa17.83■□□□□ 0.44
LIMS1-212ENST00000474038 CCNA1P78396 465 aa17.82■□□□□ 0.44
LIMS1-212ENST00000474038 MORN1Q5T089 497 aa17.82■□□□□ 0.44
LIMS1-212ENST00000474038 SAMD1Q6SPF0 538 aaPredicted RBP17.82■□□□□ 0.44
LIMS1-212ENST00000474038 CASC1Q6TDU7 716 aa17.82■□□□□ 0.44
LIMS1-212ENST00000474038 UBE2Q1Q7Z7E8 422 aa17.82■□□□□ 0.44
LIMS1-212ENST00000474038 USP6NLQ92738 828 aa17.82■□□□□ 0.44
LIMS1-212ENST00000474038 TMEM47Q9BQJ4 181 aa17.82■□□□□ 0.44
LIMS1-212ENST00000474038 ZKSCAN3Q9BRR0 538 aa17.82■□□□□ 0.44
LIMS1-212ENST00000474038 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.82■□□□□ 0.44
LIMS1-212ENST00000474038 ANO2Q9NQ90 1003 aa17.82■□□□□ 0.44
LIMS1-212ENST00000474038 ZSWIM5Q9P217 1185 aa17.82■□□□□ 0.44
LIMS1-212ENST00000474038 PPP1R9AQ9ULJ8 1098 aa17.82■□□□□ 0.44
LIMS1-212ENST00000474038 ADAMTS5Q9UNA0 930 aa17.82■□□□□ 0.44
LIMS1-212ENST00000474038 SMCHD1A6NHR9 2005 aa17.82■□□□□ 0.44
LIMS1-212ENST00000474038 FARP2O94887 1054 aaPredicted RBP17.81■□□□□ 0.44
LIMS1-212ENST00000474038 TOP1P11387 765 aaKnown RBP17.81■□□□□ 0.44
LIMS1-212ENST00000474038 XRCC5P13010 732 aaKnown RBP17.81■□□□□ 0.44
LIMS1-212ENST00000474038 CCL14Q16627 93 aa17.81■□□□□ 0.44
LIMS1-212ENST00000474038 MB21D1Q8N884 522 aa17.81■□□□□ 0.44
LIMS1-212ENST00000474038 GMCL1Q96IK5 515 aa17.81■□□□□ 0.44
LIMS1-212ENST00000474038 TTC14Q96N46 770 aa17.81■□□□□ 0.44
LIMS1-212ENST00000474038 TFRCP02786 760 aaKnown RBP17.8■□□□□ 0.44
LIMS1-212ENST00000474038 BMP3P12645 472 aa17.8■□□□□ 0.44
LIMS1-212ENST00000474038 ZKSCAN1P17029 563 aaPredicted RBP17.8■□□□□ 0.44
LIMS1-212ENST00000474038 MCCP23508 829 aa17.8■□□□□ 0.44
LIMS1-212ENST00000474038 RGS2P41220 211 aa17.8■□□□□ 0.44
LIMS1-212ENST00000474038 STOX1Q6ZVD7 989 aa17.8■□□□□ 0.44
LIMS1-212ENST00000474038 IQCA1Q86XH1 822 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms