RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 DSG3P32926 999 aa18.77■□□□□ 0.6
CCDC88B-205ENST00000472524 MAGEA10P43363 369 aaPredicted RBP18.77■□□□□ 0.6
CCDC88B-205ENST00000472524 ZMYM1Q5SVZ6 1142 aa18.77■□□□□ 0.6
CCDC88B-205ENST00000472524 IFNL3Q8IZI9 196 aa18.77■□□□□ 0.6
CCDC88B-205ENST00000472524 ATG4CQ96DT6 458 aa18.77■□□□□ 0.6
CCDC88B-205ENST00000472524 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.77■□□□□ 0.6
CCDC88B-205ENST00000472524 GOPCQ9HD26 462 aa18.77■□□□□ 0.6
CCDC88B-205ENST00000472524 PLXNA1Q9UIW2 1896 aa18.77■□□□□ 0.6
CCDC88B-205ENST00000472524 SLC15A5A6NIM6 579 aa18.76■□□□□ 0.59
CCDC88B-205ENST00000472524 PRDM1O75626 825 aa18.76■□□□□ 0.59
CCDC88B-205ENST00000472524 PLS1Q14651 629 aa18.76■□□□□ 0.59
CCDC88B-205ENST00000472524 MOV10L1Q9BXT6 1211 aaKnown RBP18.76■□□□□ 0.59
CCDC88B-205ENST00000472524 NACAP1Q9BZK3 213 aa18.76■□□□□ 0.59
CCDC88B-205ENST00000472524 SPATC1LQ9H0A9 340 aa18.76■□□□□ 0.59
CCDC88B-205ENST00000472524 PDE1AP54750 535 aa18.75■□□□□ 0.59
CCDC88B-205ENST00000472524 GRB14Q14449 540 aa18.75■□□□□ 0.59
CCDC88B-205ENST00000472524 LRRC26Q2I0M4 334 aa18.75■□□□□ 0.59
CCDC88B-205ENST00000472524 CCDC129Q6ZRS4 1044 aa18.75■□□□□ 0.59
CCDC88B-205ENST00000472524 MB21D1Q8N884 522 aa18.75■□□□□ 0.59
CCDC88B-205ENST00000472524 LNPKQ9C0E8 428 aa18.75■□□□□ 0.59
CCDC88B-205ENST00000472524 NAPBQ9H115 298 aa18.75■□□□□ 0.59
CCDC88B-205ENST00000472524 FBXO28Q9NVF7 368 aa18.75■□□□□ 0.59
CCDC88B-205ENST00000472524 FAM83BQ5T0W9 1011 aa18.74■□□□□ 0.59
CCDC88B-205ENST00000472524 MFSD14CQ5VZR4 134 aa18.74■□□□□ 0.59
CCDC88B-205ENST00000472524 B4GALNT3Q6L9W6 998 aa18.74■□□□□ 0.59
CCDC88B-205ENST00000472524 ZNF444Q8N0Y2 327 aaPredicted RBP18.74■□□□□ 0.59
CCDC88B-205ENST00000472524 EXOC6Q8TAG9 804 aa18.74■□□□□ 0.59
CCDC88B-205ENST00000472524 NPLOC4Q8TAT6 608 aa18.74■□□□□ 0.59
CCDC88B-205ENST00000472524 ZNF287Q9HBT7 754 aa18.74■□□□□ 0.59
CCDC88B-205ENST00000472524 ERCC3P19447 782 aa18.73■□□□□ 0.59
CCDC88B-205ENST00000472524 AAMPQ13685 434 aa18.73■□□□□ 0.59
CCDC88B-205ENST00000472524 NCAPG2Q86XI2 1143 aa18.73■□□□□ 0.59
CCDC88B-205ENST00000472524 EVI5LQ96CN4 794 aa18.73■□□□□ 0.59
CCDC88B-205ENST00000472524 HOXC6P09630 235 aa18.72■□□□□ 0.59
CCDC88B-205ENST00000472524 ADORA2AP29274 412 aa18.72■□□□□ 0.59
CCDC88B-205ENST00000472524 CYP2C19P33261 490 aa18.72■□□□□ 0.59
CCDC88B-205ENST00000472524 PPARAQ07869 468 aa18.72■□□□□ 0.59
CCDC88B-205ENST00000472524 DPP9Q86TI2 863 aa18.72■□□□□ 0.59
CCDC88B-205ENST00000472524 SHCBP1Q8NEM2 672 aa18.72■□□□□ 0.59
CCDC88B-205ENST00000472524 NUP88Q99567 741 aaPredicted RBP18.72■□□□□ 0.59
CCDC88B-205ENST00000472524 RWDD1Q9H446 243 aaPredicted RBP18.72■□□□□ 0.59
CCDC88B-205ENST00000472524 NYAP2Q9P242 653 aa18.72■□□□□ 0.59
CCDC88B-205ENST00000472524 COL6A3P12111 3177 aa18.72■□□□□ 0.59
CCDC88B-205ENST00000472524 SLC3A2P08195 630 aaKnown RBP18.71■□□□□ 0.59
CCDC88B-205ENST00000472524 CNGA1P29973 690 aa18.71■□□□□ 0.59
CCDC88B-205ENST00000472524 PDE4BQ07343 736 aa18.71■□□□□ 0.59
CCDC88B-205ENST00000472524 TMEM132BQ14DG7 1078 aa18.71■□□□□ 0.59
CCDC88B-205ENST00000472524 TDHQ8IZJ6 230 aa18.71■□□□□ 0.59
CCDC88B-205ENST00000472524 TRPV1Q8NER1 839 aa18.71■□□□□ 0.59
CCDC88B-205ENST00000472524 CEP95Q96GE4 821 aa18.71■□□□□ 0.59
CCDC88B-205ENST00000472524 UBE2OQ9C0C9 1292 aaKnown RBP18.71■□□□□ 0.59
CCDC88B-205ENST00000472524 CLIP2Q9UDT6 1046 aa18.71■□□□□ 0.59
CCDC88B-205ENST00000472524 DDX20Q9UHI6 824 aaKnown RBP18.71■□□□□ 0.59
CCDC88B-205ENST00000472524 PPP1R9AQ9ULJ8 1098 aa18.71■□□□□ 0.59
CCDC88B-205ENST00000472524 SMCHD1A6NHR9 2005 aa18.71■□□□□ 0.59
CCDC88B-205ENST00000472524 IGKV6D-41A0A0C4DH26 115 aa18.7■□□□□ 0.58
CCDC88B-205ENST00000472524 TRIM6-TRIM34B2RNG4 842 aa18.7■□□□□ 0.58
CCDC88B-205ENST00000472524 FOXP2O15409 715 aa18.7■□□□□ 0.58
CCDC88B-205ENST00000472524 NDUFB10O96000 172 aa18.7■□□□□ 0.58
CCDC88B-205ENST00000472524 IGHA2P01877 340 aa18.7■□□□□ 0.58
CCDC88B-205ENST00000472524 TSPY3P0CV98 308 aa18.7■□□□□ 0.58
CCDC88B-205ENST00000472524 TSPY8P0CW00 308 aa18.7■□□□□ 0.58
CCDC88B-205ENST00000472524 SMC5Q8IY18 1101 aa18.7■□□□□ 0.58
CCDC88B-205ENST00000472524 MROH8Q9H579 483 aa18.7■□□□□ 0.58
CCDC88B-205ENST00000472524 F5H6K3 240 aa18.69■□□□□ 0.58
CCDC88B-205ENST00000472524 STRNO43815 780 aa18.69■□□□□ 0.58
CCDC88B-205ENST00000472524 IGHDP01880 384 aa18.69■□□□□ 0.58
CCDC88B-205ENST00000472524 MDM2Q00987 491 aaPredicted RBP18.69■□□□□ 0.58
CCDC88B-205ENST00000472524 KLRC3Q07444 240 aa18.69■□□□□ 0.58
CCDC88B-205ENST00000472524 LRIT3Q3SXY7 679 aa18.69■□□□□ 0.58
CCDC88B-205ENST00000472524 FAM47AQ5JRC9 791 aa18.69■□□□□ 0.58
CCDC88B-205ENST00000472524 VPS53Q5VIR6 699 aa18.69■□□□□ 0.58
CCDC88B-205ENST00000472524 Q7L0L9 218 aa18.69■□□□□ 0.58
CCDC88B-205ENST00000472524 LRRC47Q8N1G4 583 aaKnown RBP18.69■□□□□ 0.58
CCDC88B-205ENST00000472524 FAM227BQ96M60 508 aa18.69■□□□□ 0.58
CCDC88B-205ENST00000472524 SENP6Q9GZR1 1112 aaPredicted RBP18.69■□□□□ 0.58
CCDC88B-205ENST00000472524 PLIN4Q96Q06 1357 aa18.68■□□□□ 0.58
CCDC88B-205ENST00000472524 A0A0D9SFI3 127 aa18.68■□□□□ 0.58
CCDC88B-205ENST00000472524 VWA5AO00534 786 aa18.68■□□□□ 0.58
CCDC88B-205ENST00000472524 COBLO75128 1261 aa18.68■□□□□ 0.58
CCDC88B-205ENST00000472524 SLC25A27O95847 323 aa18.68■□□□□ 0.58
CCDC88B-205ENST00000472524 TFAP4Q01664 338 aa18.68■□□□□ 0.58
CCDC88B-205ENST00000472524 CTDSPL2Q05D32 466 aa18.68■□□□□ 0.58
CCDC88B-205ENST00000472524 DEFB123Q8N688 67 aa18.68■□□□□ 0.58
CCDC88B-205ENST00000472524 SLC17A8Q8NDX2 589 aa18.68■□□□□ 0.58
CCDC88B-205ENST00000472524 RILPL2Q969X0 211 aa18.68■□□□□ 0.58
CCDC88B-205ENST00000472524 SLF1Q9BQI6 1058 aa18.68■□□□□ 0.58
CCDC88B-205ENST00000472524 HELLSQ9NRZ9 838 aa18.68■□□□□ 0.58
CCDC88B-205ENST00000472524 MTMR4Q9NYA4 1195 aa18.68■□□□□ 0.58
CCDC88B-205ENST00000472524 ADAMTS5Q9UNA0 930 aa18.68■□□□□ 0.58
CCDC88B-205ENST00000472524 TTLL1O95922 423 aa18.67■□□□□ 0.58
CCDC88B-205ENST00000472524 FCER1AP12319 257 aa18.67■□□□□ 0.58
CCDC88B-205ENST00000472524 CYBAP13498 195 aa18.67■□□□□ 0.58
CCDC88B-205ENST00000472524 ATN1P54259 1190 aaPredicted RBP18.67■□□□□ 0.58
CCDC88B-205ENST00000472524 GPR153Q6NV75 609 aa18.67■□□□□ 0.58
CCDC88B-205ENST00000472524 CHD1LQ86WJ1 897 aa18.67■□□□□ 0.58
CCDC88B-205ENST00000472524 NEDD1Q8NHV4 660 aa18.67■□□□□ 0.58
CCDC88B-205ENST00000472524 MMP19Q99542 508 aa18.67■□□□□ 0.58
CCDC88B-205ENST00000472524 SUPT16HQ9Y5B9 1047 aaKnown RBP18.67■□□□□ 0.58
CCDC88B-205ENST00000472524 MCM3APO60318 1980 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms