RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 FAM83BQ5T0W9 1011 aa22.7■■□□□ 1.22
COL7A1-207ENST00000467985 SAMD1Q6SPF0 538 aaPredicted RBP22.7■■□□□ 1.22
COL7A1-207ENST00000467985 NECAB2Q7Z6G3 386 aa22.7■■□□□ 1.22
COL7A1-207ENST00000467985 DPP9Q86TI2 863 aa22.7■■□□□ 1.22
COL7A1-207ENST00000467985 CHD1LQ86WJ1 897 aa22.7■■□□□ 1.22
COL7A1-207ENST00000467985 ABRAQ8N0Z2 381 aa22.7■■□□□ 1.22
COL7A1-207ENST00000467985 MKL1Q969V6 931 aa22.7■■□□□ 1.22
COL7A1-207ENST00000467985 SLC5A4Q9NY91 659 aa22.7■■□□□ 1.22
COL7A1-207ENST00000467985 CLIP2Q9UDT6 1046 aa22.7■■□□□ 1.22
COL7A1-207ENST00000467985 PPP1R9AQ9ULJ8 1098 aa22.7■■□□□ 1.22
COL7A1-207ENST00000467985 NR2E3Q9Y5X4 410 aa22.7■■□□□ 1.22
COL7A1-207ENST00000467985 PLIN4Q96Q06 1357 aa22.7■■□□□ 1.22
COL7A1-207ENST00000467985 F5H6K3 240 aa22.69■■□□□ 1.22
COL7A1-207ENST00000467985 TTLL1O95922 423 aa22.69■■□□□ 1.22
COL7A1-207ENST00000467985 TSPY3P0CV98 308 aa22.69■■□□□ 1.22
COL7A1-207ENST00000467985 TSPY8P0CW00 308 aa22.69■■□□□ 1.22
COL7A1-207ENST00000467985 NUCB1Q02818 461 aa22.69■■□□□ 1.22
COL7A1-207ENST00000467985 KLRC3Q07444 240 aa22.69■■□□□ 1.22
COL7A1-207ENST00000467985 PPP4R3BQ5MIZ7 849 aa22.69■■□□□ 1.22
COL7A1-207ENST00000467985 B4GALNT3Q6L9W6 998 aa22.69■■□□□ 1.22
COL7A1-207ENST00000467985 NEDD1Q8NHV4 660 aa22.69■■□□□ 1.22
COL7A1-207ENST00000467985 MTMR4Q9NYA4 1195 aa22.69■■□□□ 1.22
COL7A1-207ENST00000467985 OGDHLQ9ULD0 1010 aa22.69■■□□□ 1.22
COL7A1-207ENST00000467985 RANBP2P49792 3224 aaKnown RBP22.69■■□□□ 1.22
COL7A1-207ENST00000467985 TRIM6-TRIM34B2RNG4 842 aa22.68■■□□□ 1.22
COL7A1-207ENST00000467985 H0YGN5 161 aa22.68■■□□□ 1.22
COL7A1-207ENST00000467985 VWA5AO00534 786 aa22.68■■□□□ 1.22
COL7A1-207ENST00000467985 ADORA2AP29274 412 aa22.68■■□□□ 1.22
COL7A1-207ENST00000467985 COPB2P35606 906 aa22.68■■□□□ 1.22
COL7A1-207ENST00000467985 TMEM132BQ14DG7 1078 aa22.68■■□□□ 1.22
COL7A1-207ENST00000467985 CCDC129Q6ZRS4 1044 aa22.68■■□□□ 1.22
COL7A1-207ENST00000467985 NCAPG2Q86XI2 1143 aa22.68■■□□□ 1.22
COL7A1-207ENST00000467985 CEP95Q96GE4 821 aa22.68■■□□□ 1.22
COL7A1-207ENST00000467985 PAWRQ96IZ0 340 aaKnown RBP22.68■■□□□ 1.22
COL7A1-207ENST00000467985 MYH4Q9Y623 1939 aa22.67■■□□□ 1.22
COL7A1-207ENST00000467985 SLC34A2O95436 690 aa22.67■■□□□ 1.22
COL7A1-207ENST00000467985 NDUFB10O96000 172 aa22.67■■□□□ 1.22
COL7A1-207ENST00000467985 IGHDP01880 384 aa22.67■■□□□ 1.22
COL7A1-207ENST00000467985 ALX1Q15699 326 aa22.67■■□□□ 1.22
COL7A1-207ENST00000467985 MCMDC2Q4G0Z9 681 aa22.67■■□□□ 1.22
COL7A1-207ENST00000467985 OLFML2BQ68BL8 750 aa22.67■■□□□ 1.22
COL7A1-207ENST00000467985 SLF1Q9BQI6 1058 aa22.67■■□□□ 1.22
COL7A1-207ENST00000467985 NBPF3Q9H094 633 aa22.67■■□□□ 1.22
COL7A1-207ENST00000467985 FBXO28Q9NVF7 368 aa22.67■■□□□ 1.22
COL7A1-207ENST00000467985 FOXP2O15409 715 aa22.66■■□□□ 1.22
COL7A1-207ENST00000467985 FCER1AP12319 257 aa22.66■■□□□ 1.22
COL7A1-207ENST00000467985 TFAP4Q01664 338 aa22.66■■□□□ 1.22
COL7A1-207ENST00000467985 RIOX2Q8IUF8 465 aa22.66■■□□□ 1.22
COL7A1-207ENST00000467985 PRPF38AQ8NAV1 312 aaKnown RBP22.66■■□□□ 1.22
COL7A1-207ENST00000467985 GMCL1P1Q8NEA9 526 aa22.66■■□□□ 1.22
COL7A1-207ENST00000467985 OSBPL3Q9H4L5 887 aa22.66■■□□□ 1.22
COL7A1-207ENST00000467985 FLRT1Q9NZU1 646 aa22.66■■□□□ 1.22
COL7A1-207ENST00000467985 ANAPC4Q9UJX5 808 aa22.66■■□□□ 1.22
COL7A1-207ENST00000467985 SUPT16HQ9Y5B9 1047 aaKnown RBP22.66■■□□□ 1.22
COL7A1-207ENST00000467985 MSCO60682 206 aa22.65■■□□□ 1.22
COL7A1-207ENST00000467985 CCND3P30281 292 aaPredicted RBP22.65■■□□□ 1.22
COL7A1-207ENST00000467985 STAT3P40763 770 aa22.65■■□□□ 1.22
COL7A1-207ENST00000467985 NPLOC4Q8TAT6 608 aa22.65■■□□□ 1.22
COL7A1-207ENST00000467985 FAM227BQ96M60 508 aa22.65■■□□□ 1.22
COL7A1-207ENST00000467985 COL11A1P12107 1806 aaPredicted RBP22.65■■□□□ 1.22
COL7A1-207ENST00000467985 DNAH12Q6ZR08 3092 aa22.65■■□□□ 1.22
COL7A1-207ENST00000467985 EVI5O60447 810 aa22.64■■□□□ 1.21
COL7A1-207ENST00000467985 MFAP1P55081 439 aaKnown RBP22.64■■□□□ 1.21
COL7A1-207ENST00000467985 FAM47AQ5JRC9 791 aa22.64■■□□□ 1.21
COL7A1-207ENST00000467985 VPS53Q5VIR6 699 aa22.64■■□□□ 1.21
COL7A1-207ENST00000467985 LHX8Q68G74 356 aa22.64■■□□□ 1.21
COL7A1-207ENST00000467985 PLEKHM2Q8IWE5 1019 aa22.64■■□□□ 1.21
COL7A1-207ENST00000467985 DIS3LQ8TF46 1054 aaKnown RBP22.64■■□□□ 1.21
COL7A1-207ENST00000467985 RILPL2Q969X0 211 aa22.64■■□□□ 1.21
COL7A1-207ENST00000467985 NUP88Q99567 741 aaPredicted RBP22.64■■□□□ 1.21
COL7A1-207ENST00000467985 ZNF214Q9UL59 606 aaPredicted RBP22.64■■□□□ 1.21
COL7A1-207ENST00000467985 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.64■■□□□ 1.21
COL7A1-207ENST00000467985 ZMYM6O95789 1325 aa22.63■■□□□ 1.21
COL7A1-207ENST00000467985 A0A0D9SFI3 127 aa22.63■■□□□ 1.21
COL7A1-207ENST00000467985 IGHA2P01877 340 aa22.63■■□□□ 1.21
COL7A1-207ENST00000467985 HABP4Q5JVS0 413 aaKnown RBP22.63■■□□□ 1.21
COL7A1-207ENST00000467985 REPS2Q8NFH8 660 aa22.63■■□□□ 1.21
COL7A1-207ENST00000467985 TEX13BQ9BXU2 312 aa22.63■■□□□ 1.21
COL7A1-207ENST00000467985 FEM1BQ9UK73 627 aa22.63■■□□□ 1.21
COL7A1-207ENST00000467985 TSPY2A6NKD2 308 aa22.62■■□□□ 1.21
COL7A1-207ENST00000467985 COBLO75128 1261 aa22.62■■□□□ 1.21
COL7A1-207ENST00000467985 CYP2C19P33261 490 aa22.62■■□□□ 1.21
COL7A1-207ENST00000467985 CTDSPL2Q05D32 466 aa22.62■■□□□ 1.21
COL7A1-207ENST00000467985 NMIQ13287 307 aaPredicted RBP22.62■■□□□ 1.21
COL7A1-207ENST00000467985 KCTD2Q14681 263 aa22.62■■□□□ 1.21
COL7A1-207ENST00000467985 LRRC47Q8N1G4 583 aaKnown RBP22.62■■□□□ 1.21
COL7A1-207ENST00000467985 MMP19Q99542 508 aa22.62■■□□□ 1.21
COL7A1-207ENST00000467985 C11orf49Q9H6J7 331 aa22.62■■□□□ 1.21
COL7A1-207ENST00000467985 CTDP1Q9Y5B0 961 aaPredicted RBP22.62■■□□□ 1.21
COL7A1-207ENST00000467985 ORC4O43929 436 aa22.61■■□□□ 1.21
COL7A1-207ENST00000467985 ZBED4O75132 1171 aa22.61■■□□□ 1.21
COL7A1-207ENST00000467985 CNGA1P29973 690 aa22.61■■□□□ 1.21
COL7A1-207ENST00000467985 MNX1P50219 401 aaPredicted RBP22.61■■□□□ 1.21
COL7A1-207ENST00000467985 SLFN13Q68D06 897 aa22.61■■□□□ 1.21
COL7A1-207ENST00000467985 DDX20Q9UHI6 824 aaKnown RBP22.61■■□□□ 1.21
COL7A1-207ENST00000467985 CCDC171Q6TFL3 1326 aa22.6■■□□□ 1.21
COL7A1-207ENST00000467985 ATP2A1O14983 1001 aa22.6■■□□□ 1.21
COL7A1-207ENST00000467985 FGAP02671 866 aa22.6■■□□□ 1.21
COL7A1-207ENST00000467985 FDX1P10109 184 aa22.6■■□□□ 1.21
COL7A1-207ENST00000467985 HSPD1P10809 573 aaKnown RBP22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms