RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 SLC38A3Q99624 504 aa6.69□□□□□ -1.34
VPS41-209ENST00000457055 BCL2L13Q9BXK5 485 aa6.69□□□□□ -1.34
VPS41-209ENST00000457055 FOXQ1Q9C009 403 aa6.69□□□□□ -1.34
VPS41-209ENST00000457055 MAPK8IP1Q9UQF2 711 aa6.69□□□□□ -1.34
VPS41-209ENST00000457055 PITPNM2Q9BZ72 1349 aa6.69□□□□□ -1.34
VPS41-209ENST00000457055 PRAMEF27A3QJZ7 478 aa6.68□□□□□ -1.34
VPS41-209ENST00000457055 CELA3AP09093 270 aa6.68□□□□□ -1.34
VPS41-209ENST00000457055 FMR1Q06787 632 aaKnown RBP eCLIP6.68□□□□□ -1.34
VPS41-209ENST00000457055 LMOD3Q0VAK6 560 aa6.68□□□□□ -1.34
VPS41-209ENST00000457055 MTA1Q13330 715 aa6.68□□□□□ -1.34
VPS41-209ENST00000457055 KCNMB1Q16558 191 aa6.68□□□□□ -1.34
VPS41-209ENST00000457055 PCNX4Q63HM2 1172 aa6.68□□□□□ -1.34
VPS41-209ENST00000457055 ICE2Q659A1 982 aa6.68□□□□□ -1.34
VPS41-209ENST00000457055 SCARA3Q6AZY7 606 aa6.68□□□□□ -1.34
VPS41-209ENST00000457055 ALG1LQ6GMV1 187 aa6.68□□□□□ -1.34
VPS41-209ENST00000457055 ZSCAN29Q8IWY8 852 aaPredicted RBP6.68□□□□□ -1.34
VPS41-209ENST00000457055 CYP8B1Q9UNU6 501 aa6.68□□□□□ -1.34
VPS41-209ENST00000457055 PTPRMP28827 1452 aa6.67□□□□□ -1.34
VPS41-209ENST00000457055 CUX1P39880 1505 aa6.67□□□□□ -1.34
VPS41-209ENST00000457055 PCF11O94913 1555 aaKnown RBP6.67□□□□□ -1.34
VPS41-209ENST00000457055 LRRC10BA6NIK2 292 aa6.67□□□□□ -1.34
VPS41-209ENST00000457055 GIPC1O14908 333 aa6.67□□□□□ -1.34
VPS41-209ENST00000457055 LRIG2O94898 1065 aa6.67□□□□□ -1.34
VPS41-209ENST00000457055 ATP2B2Q01814 1243 aa6.67□□□□□ -1.34
VPS41-209ENST00000457055 EGFLAMQ63HQ2 1017 aa6.67□□□□□ -1.34
VPS41-209ENST00000457055 ANKRD23Q86SG2 305 aa6.67□□□□□ -1.34
VPS41-209ENST00000457055 PDILTQ8N807 584 aa6.67□□□□□ -1.34
VPS41-209ENST00000457055 ZNF507Q8TCN5 953 aa6.67□□□□□ -1.34
VPS41-209ENST00000457055 ANKRD24Q8TF21 1146 aa6.67□□□□□ -1.34
VPS41-209ENST00000457055 ZNF830Q96NB3 372 aaPredicted RBP6.67□□□□□ -1.34
VPS41-209ENST00000457055 CTNND2Q9UQB3 1225 aa6.67□□□□□ -1.34
VPS41-209ENST00000457055 ABCA5Q8WWZ7 1642 aa6.66□□□□□ -1.34
VPS41-209ENST00000457055 CCDC189A1A4V9 331 aa6.66□□□□□ -1.34
VPS41-209ENST00000457055 CFAP69A5D8W1 941 aa6.66□□□□□ -1.34
VPS41-209ENST00000457055 XPCQ01831 940 aaPredicted RBP6.66□□□□□ -1.34
VPS41-209ENST00000457055 INPP5AQ14642 412 aa6.66□□□□□ -1.34
VPS41-209ENST00000457055 TAF3Q5VWG9 929 aa6.66□□□□□ -1.34
VPS41-209ENST00000457055 SDE2Q6IQ49 451 aa6.66□□□□□ -1.34
VPS41-209ENST00000457055 LRFN4Q6PJG9 635 aa6.66□□□□□ -1.34
VPS41-209ENST00000457055 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.66□□□□□ -1.34
VPS41-209ENST00000457055 ATL2Q8NHH9 583 aa6.66□□□□□ -1.34
VPS41-209ENST00000457055 GIPC2Q8TF65 315 aa6.66□□□□□ -1.34
VPS41-209ENST00000457055 KRTAP4-7Q9BYR0 210 aa6.66□□□□□ -1.34
VPS41-209ENST00000457055 LNPKQ9C0E8 428 aa6.66□□□□□ -1.34
VPS41-209ENST00000457055 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.66□□□□□ -1.34
VPS41-209ENST00000457055 PRDM4Q9UKN5 801 aa6.66□□□□□ -1.34
VPS41-209ENST00000457055 SPG7Q9UQ90 795 aa6.66□□□□□ -1.34
VPS41-209ENST00000457055 ADAMTSL3P82987 1691 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 CUL7Q14999 1698 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 FAM155AB1AL88 458 aaPredicted RBP6.65□□□□□ -1.34
VPS41-209ENST00000457055 SLITRK5O94991 958 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 USP17L7P0C7H9 530 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 FAM200BP0CF97 657 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 VDRP11473 427 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 MLANAQ16655 118 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 PLPPR2Q96GM1 343 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 FAM84AQ96KN4 292 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 ASB16Q96NS5 453 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 RPS6KC1Q96S38 1066 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 NAP1L4Q99733 375 aaKnown RBP6.65□□□□□ -1.34
VPS41-209ENST00000457055 MIPEPQ99797 713 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 IRF2BPLQ9H1B7 796 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 C12orf49Q9H741 205 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 FBRSQ9HAH7 460 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 FAM53CQ9NYF3 392 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 FAM8A1Q9UBU6 413 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 ABCF2Q9UG63 623 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 NRBP1Q9UHY1 535 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 SYNPO2Q9UMS6 1093 aa6.65□□□□□ -1.34
VPS41-209ENST00000457055 ZNF503-AS2A6NEH8 195 aa6.64□□□□□ -1.35
VPS41-209ENST00000457055 PRR33A8MZF0 331 aa6.64□□□□□ -1.35
VPS41-209ENST00000457055 AFMP43652 599 aa6.64□□□□□ -1.35
VPS41-209ENST00000457055 MESP2Q0VG99 397 aa6.64□□□□□ -1.35
VPS41-209ENST00000457055 HDXQ7Z353 690 aa6.64□□□□□ -1.35
VPS41-209ENST00000457055 PCGF5Q86SE9 256 aa6.64□□□□□ -1.35
VPS41-209ENST00000457055 RPAINQ86UA6 219 aa6.64□□□□□ -1.35
VPS41-209ENST00000457055 MFSD4AQ8N468 514 aa6.64□□□□□ -1.35
VPS41-209ENST00000457055 C1orf131Q8NDD1 294 aaKnown RBP6.64□□□□□ -1.35
VPS41-209ENST00000457055 HSPA12BQ96MM6 686 aa6.64□□□□□ -1.35
VPS41-209ENST00000457055 PAGR1Q9BTK6 254 aa6.64□□□□□ -1.35
VPS41-209ENST00000457055 RSPH9Q9H1X1 276 aaPredicted RBP6.64□□□□□ -1.35
VPS41-209ENST00000457055 CARS2Q9HA77 564 aaKnown RBP6.64□□□□□ -1.35
VPS41-209ENST00000457055 LMCD1Q9NZU5 365 aa6.64□□□□□ -1.35
VPS41-209ENST00000457055 CENPJQ9HC77 1338 aaPredicted RBP6.64□□□□□ -1.35
VPS41-209ENST00000457055 ADAMTS12P58397 1594 aa6.64□□□□□ -1.35
VPS41-209ENST00000457055 BICDL2A1A5D9 508 aa6.63□□□□□ -1.35
VPS41-209ENST00000457055 GLI2P10070 1586 aa6.63□□□□□ -1.35
VPS41-209ENST00000457055 PTPN11Q06124 597 aaPredicted RBP6.63□□□□□ -1.35
VPS41-209ENST00000457055 SLBPQ14493 270 aaKnown RBP eCLIP6.63□□□□□ -1.35
VPS41-209ENST00000457055 ZKSCAN8Q15776 578 aaPredicted RBP6.63□□□□□ -1.35
VPS41-209ENST00000457055 TBC1D10BQ4KMP7 808 aaPredicted RBP6.63□□□□□ -1.35
VPS41-209ENST00000457055 SFRP5Q5T4F7 317 aa6.63□□□□□ -1.35
VPS41-209ENST00000457055 CDKAL1Q5VV42 579 aa6.63□□□□□ -1.35
VPS41-209ENST00000457055 FYB2Q5VWT5 728 aa6.63□□□□□ -1.35
VPS41-209ENST00000457055 DNAJC14Q6Y2X3 702 aaPredicted RBP6.63□□□□□ -1.35
VPS41-209ENST00000457055 ASXL2Q76L83 1435 aa6.63□□□□□ -1.35
VPS41-209ENST00000457055 CYFIP1Q7L576 1253 aa6.63□□□□□ -1.35
VPS41-209ENST00000457055 ZNF513Q8N8E2 541 aaPredicted RBP6.63□□□□□ -1.35
VPS41-209ENST00000457055 GAL3ST3Q96A11 431 aa6.63□□□□□ -1.35
VPS41-209ENST00000457055 LIN37Q96GY3 246 aaPredicted RBP6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms