RNA–Protein interactions for RNA: ENST00000442029.5

PTPRN-206, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 541 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-206ENST00000442029 HOXC6P09630 235 aa17.22■□□□□ 0.35
PTPRN-206ENST00000442029 CCND3P30281 292 aaPredicted RBP17.22■□□□□ 0.35
PTPRN-206ENST00000442029 FAM83BQ5T0W9 1011 aa17.22■□□□□ 0.35
PTPRN-206ENST00000442029 EVI5LQ96CN4 794 aa17.22■□□□□ 0.35
PTPRN-206ENST00000442029 NYAP2Q9P242 653 aa17.22■□□□□ 0.35
PTPRN-206ENST00000442029 OGDHLQ9ULD0 1010 aa17.22■□□□□ 0.35
PTPRN-206ENST00000442029 COLQQ9Y215 455 aaPredicted RBP17.22■□□□□ 0.35
PTPRN-206ENST00000442029 SLC25A27O95847 323 aa17.21■□□□□ 0.35
PTPRN-206ENST00000442029 TSPY3P0CV98 308 aa17.21■□□□□ 0.35
PTPRN-206ENST00000442029 TSPY8P0CW00 308 aa17.21■□□□□ 0.35
PTPRN-206ENST00000442029 ADORA2AP29274 412 aa17.21■□□□□ 0.35
PTPRN-206ENST00000442029 CNGA1P29973 690 aa17.21■□□□□ 0.35
PTPRN-206ENST00000442029 CHRDL2Q6WN34 429 aa17.21■□□□□ 0.35
PTPRN-206ENST00000442029 NPLOC4Q8TAT6 608 aa17.21■□□□□ 0.35
PTPRN-206ENST00000442029 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.21■□□□□ 0.35
PTPRN-206ENST00000442029 RWDD1Q9H446 243 aaPredicted RBP17.21■□□□□ 0.35
PTPRN-206ENST00000442029 C11orf49Q9H6J7 331 aa17.21■□□□□ 0.35
PTPRN-206ENST00000442029 FLRT1Q9NZU1 646 aa17.21■□□□□ 0.35
PTPRN-206ENST00000442029 SMCHD1A6NHR9 2005 aa17.21■□□□□ 0.35
PTPRN-206ENST00000442029 SALL3Q9BXA9 1300 aa17.21■□□□□ 0.34
PTPRN-206ENST00000442029 PDE1AP54750 535 aa17.2■□□□□ 0.34
PTPRN-206ENST00000442029 PPARAQ07869 468 aa17.2■□□□□ 0.34
PTPRN-206ENST00000442029 FBXO28Q9NVF7 368 aa17.2■□□□□ 0.34
PTPRN-206ENST00000442029 CLIP2Q9UDT6 1046 aa17.2■□□□□ 0.34
PTPRN-206ENST00000442029 STAP2Q9UGK3 403 aa17.2■□□□□ 0.34
PTPRN-206ENST00000442029 PPP1R9AQ9ULJ8 1098 aa17.2■□□□□ 0.34
PTPRN-206ENST00000442029 CTDP1Q9Y5B0 961 aaPredicted RBP17.2■□□□□ 0.34
PTPRN-206ENST00000442029 MSCO60682 206 aa17.19■□□□□ 0.34
PTPRN-206ENST00000442029 FCER1AP12319 257 aa17.19■□□□□ 0.34
PTPRN-206ENST00000442029 COPB2P35606 906 aa17.19■□□□□ 0.34
PTPRN-206ENST00000442029 TMEM132BQ14DG7 1078 aa17.19■□□□□ 0.34
PTPRN-206ENST00000442029 SLF1Q9BQI6 1058 aa17.19■□□□□ 0.34
PTPRN-206ENST00000442029 LNPKQ9C0E8 428 aa17.19■□□□□ 0.34
PTPRN-206ENST00000442029 TRIOBPQ9H2D6 2365 aa17.18■□□□□ 0.34
PTPRN-206ENST00000442029 TRIM6-TRIM34B2RNG4 842 aa17.18■□□□□ 0.34
PTPRN-206ENST00000442029 F5H6K3 240 aa17.18■□□□□ 0.34
PTPRN-206ENST00000442029 VWA5AO00534 786 aa17.18■□□□□ 0.34
PTPRN-206ENST00000442029 TTLL1O95922 423 aa17.18■□□□□ 0.34
PTPRN-206ENST00000442029 NDUFB10O96000 172 aa17.18■□□□□ 0.34
PTPRN-206ENST00000442029 CYP2C19P33261 490 aa17.18■□□□□ 0.34
PTPRN-206ENST00000442029 STAT3P40763 770 aa17.18■□□□□ 0.34
PTPRN-206ENST00000442029 KLRC3Q07444 240 aa17.18■□□□□ 0.34
PTPRN-206ENST00000442029 OLFML2BQ68BL8 750 aa17.18■□□□□ 0.34
PTPRN-206ENST00000442029 B4GALNT3Q6L9W6 998 aa17.18■□□□□ 0.34
PTPRN-206ENST00000442029 CCDC129Q6ZRS4 1044 aa17.18■□□□□ 0.34
PTPRN-206ENST00000442029 ABRAQ8N0Z2 381 aa17.18■□□□□ 0.34
PTPRN-206ENST00000442029 CEP95Q96GE4 821 aa17.18■□□□□ 0.34
PTPRN-206ENST00000442029 MMP19Q99542 508 aa17.18■□□□□ 0.34
PTPRN-206ENST00000442029 NUP88Q99567 741 aaPredicted RBP17.18■□□□□ 0.34
PTPRN-206ENST00000442029 ISY1Q9ULR0 285 aaKnown RBP17.18■□□□□ 0.34
PTPRN-206ENST00000442029 MCM3APO60318 1980 aa17.17■□□□□ 0.34
PTPRN-206ENST00000442029 KCTD2Q14681 263 aa17.17■□□□□ 0.34
PTPRN-206ENST00000442029 PPP4R3BQ5MIZ7 849 aa17.17■□□□□ 0.34
PTPRN-206ENST00000442029 RIOX2Q8IUF8 465 aa17.17■□□□□ 0.34
PTPRN-206ENST00000442029 C7orf61Q8IZ16 206 aa17.17■□□□□ 0.34
PTPRN-206ENST00000442029 NEDD1Q8NHV4 660 aa17.17■□□□□ 0.34
PTPRN-206ENST00000442029 HELLSQ9NRZ9 838 aa17.17■□□□□ 0.34
PTPRN-206ENST00000442029 DDX20Q9UHI6 824 aaKnown RBP17.17■□□□□ 0.34
PTPRN-206ENST00000442029 ADAMTS5Q9UNA0 930 aa17.17■□□□□ 0.34
PTPRN-206ENST00000442029 PLIN4Q96Q06 1357 aa17.16■□□□□ 0.34
PTPRN-206ENST00000442029 IGKV6D-41A0A0C4DH26 115 aa17.16■□□□□ 0.34
PTPRN-206ENST00000442029 COBLO75128 1261 aa17.16■□□□□ 0.34
PTPRN-206ENST00000442029 TFAP4Q01664 338 aa17.16■□□□□ 0.34
PTPRN-206ENST00000442029 FAM47AQ5JRC9 791 aa17.16■□□□□ 0.34
PTPRN-206ENST00000442029 LHX8Q68G74 356 aa17.16■□□□□ 0.34
PTPRN-206ENST00000442029 LRRC47Q8N1G4 583 aaKnown RBP17.16■□□□□ 0.34
PTPRN-206ENST00000442029 RILPL2Q969X0 211 aa17.16■□□□□ 0.34
PTPRN-206ENST00000442029 MTMR4Q9NYA4 1195 aa17.16■□□□□ 0.34
PTPRN-206ENST00000442029 SYNPO2Q9UMS6 1093 aa17.16■□□□□ 0.34
PTPRN-206ENST00000442029 TSPY2A6NKD2 308 aa17.15■□□□□ 0.34
PTPRN-206ENST00000442029 ZBED4O75132 1171 aa17.15■□□□□ 0.34
PTPRN-206ENST00000442029 SLC4A3P48751 1232 aa17.15■□□□□ 0.34
PTPRN-206ENST00000442029 MNX1P50219 401 aaPredicted RBP17.15■□□□□ 0.34
PTPRN-206ENST00000442029 CTDSPL2Q05D32 466 aa17.15■□□□□ 0.34
PTPRN-206ENST00000442029 PRPF38AQ8NAV1 312 aaKnown RBP17.15■□□□□ 0.34
PTPRN-206ENST00000442029 MKL1Q969V6 931 aa17.15■□□□□ 0.34
PTPRN-206ENST00000442029 KIFC2Q96AC6 838 aa17.15■□□□□ 0.34
PTPRN-206ENST00000442029 TEX13BQ9BXU2 312 aa17.15■□□□□ 0.34
PTPRN-206ENST00000442029 ZNF214Q9UL59 606 aaPredicted RBP17.15■□□□□ 0.34
PTPRN-206ENST00000442029 CYBAP13498 195 aa17.14■□□□□ 0.33
PTPRN-206ENST00000442029 MCMDC2Q4G0Z9 681 aa17.14■□□□□ 0.33
PTPRN-206ENST00000442029 SLFN13Q68D06 897 aa17.14■□□□□ 0.33
PTPRN-206ENST00000442029 SNRNP48Q6IEG0 339 aaKnown RBP17.14■□□□□ 0.33
PTPRN-206ENST00000442029 TICAM2Q86XR7 235 aa17.14■□□□□ 0.33
PTPRN-206ENST00000442029 SMC5Q8IY18 1101 aa17.14■□□□□ 0.33
PTPRN-206ENST00000442029 CPXCR1Q8N123 301 aa17.14■□□□□ 0.33
PTPRN-206ENST00000442029 GMCL1P1Q8NEA9 526 aa17.14■□□□□ 0.33
PTPRN-206ENST00000442029 EXOC6Q8TAG9 804 aa17.14■□□□□ 0.33
PTPRN-206ENST00000442029 MAML3Q96JK9 1138 aa17.14■□□□□ 0.33
PTPRN-206ENST00000442029 RBM27Q9P2N5 1060 aaKnown RBP17.14■□□□□ 0.33
PTPRN-206ENST00000442029 FEM1BQ9UK73 627 aa17.14■□□□□ 0.33
PTPRN-206ENST00000442029 LAMA4Q16363 1823 aa17.13■□□□□ 0.33
PTPRN-206ENST00000442029 RANBP6O60518 1105 aaKnown RBP17.13■□□□□ 0.33
PTPRN-206ENST00000442029 BMP3P12645 472 aa17.13■□□□□ 0.33
PTPRN-206ENST00000442029 FXR1P51114 621 aaKnown RBP eCLIP17.13■□□□□ 0.33
PTPRN-206ENST00000442029 IKQ13123 557 aaPredicted RBP17.13■□□□□ 0.33
PTPRN-206ENST00000442029 VPS53Q5VIR6 699 aa17.13■□□□□ 0.33
PTPRN-206ENST00000442029 CHD1LQ86WJ1 897 aa17.13■□□□□ 0.33
PTPRN-206ENST00000442029 TRPV1Q8NER1 839 aa17.13■□□□□ 0.33
PTPRN-206ENST00000442029 REPS2Q8NFH8 660 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms