RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 FOXP1Q9H334 677 aaPredicted RBP13.75□□□□□ -0.21
TCOF1-205ENST00000439160 POLR3EQ9NVU0 708 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 RCOR1Q9UKL0 485 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 FRMD4BQ9Y2L6 1034 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 TMEM131LA2VDJ0 1609 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 ALAS1P13196 640 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 TPH2Q8IWU9 490 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 CPDO75976 1380 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 A0A1W2PQ27 194 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 A0A1W2PQ64 194 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 A0A1W2PQD8 194 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 FBXO11Q86XK2 927 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 CEP170BQ9Y4F5 1589 aaPredicted RBP13.74□□□□□ -0.21
TCOF1-205ENST00000439160 POTEB2H3BUK9 544 aa13.74□□□□□ -0.21
TCOF1-205ENST00000439160 CDC25AP30304 524 aa13.74□□□□□ -0.21
TCOF1-205ENST00000439160 RESTQ13127 1097 aa13.74□□□□□ -0.21
TCOF1-205ENST00000439160 CCDC17Q96LX7 622 aa13.74□□□□□ -0.21
TCOF1-205ENST00000439160 FANCLQ9NW38 375 aa13.74□□□□□ -0.21
TCOF1-205ENST00000439160 BCCIPQ9P287 314 aaKnown RBP eCLIP13.74□□□□□ -0.21
TCOF1-205ENST00000439160 ANKRD62A6NC57 917 aa13.74□□□□□ -0.21
TCOF1-205ENST00000439160 EPB41P11171 864 aaKnown RBP13.74□□□□□ -0.21
TCOF1-205ENST00000439160 CACNB3P54284 484 aa13.74□□□□□ -0.21
TCOF1-205ENST00000439160 NFIXQ14938 502 aa13.74□□□□□ -0.21
TCOF1-205ENST00000439160 NEBLO76041 1014 aa13.74□□□□□ -0.21
TCOF1-205ENST00000439160 NPR1P16066 1061 aa13.74□□□□□ -0.21
TCOF1-205ENST00000439160 MYCT1Q8N699 235 aa13.74□□□□□ -0.21
TCOF1-205ENST00000439160 TTC14Q96N46 770 aa13.74□□□□□ -0.21
TCOF1-205ENST00000439160 MMP1P03956 469 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 CKAP4Q07065 602 aaKnown RBP13.73□□□□□ -0.21
TCOF1-205ENST00000439160 LRMPQ12912 555 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 SH3RF3Q8TEJ3 882 aaPredicted RBP13.73□□□□□ -0.21
TCOF1-205ENST00000439160 SYNCQ9H7C4 482 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 NEDD4P46934 1319 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 GAS7O60861 476 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 TTLL1O95922 423 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 MCM6Q14566 821 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 CC2D2BQ6DHV5 1058 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 CYB5R4Q7L1T6 521 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 PGBD1Q96JS3 809 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 DNAI2Q9GZS0 605 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 CD209Q9NNX6 404 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 PIGSQ96S52 555 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 ATF5Q9Y2D1 282 aaPredicted RBP13.73□□□□□ -0.21
TCOF1-205ENST00000439160 CD163L1Q9NR16 1453 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 PLEKHA8P1O95397 391 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 ADKP55263 362 aaKnown RBP13.73□□□□□ -0.21
TCOF1-205ENST00000439160 LONRF3Q496Y0 759 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 ARHGAP27Q6ZUM4 889 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 HOOK2Q96ED9 719 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 ARFGAP3Q9NP61 516 aa13.73□□□□□ -0.21
TCOF1-205ENST00000439160 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.73□□□□□ -0.218e-6■■■■■ 36.2
TCOF1-205ENST00000439160 GCNT3O95395 438 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 TUBB4AP04350 444 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 GALNT17Q6IS24 598 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 DPH6Q7L8W6 267 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 MRPL44Q9H9J2 332 aaKnown RBP13.72□□□□□ -0.21
TCOF1-205ENST00000439160 SPATA31A1Q5TZJ5 1347 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 KIAA0753Q2KHM9 967 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 GPATCH4Q5T3I0 446 aaKnown RBP13.72□□□□□ -0.21
TCOF1-205ENST00000439160 SLC44A5Q8NCS7 719 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 COA7Q96BR5 231 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 FAM84BQ96KN1 310 aaPredicted RBP13.72□□□□□ -0.21
TCOF1-205ENST00000439160 COA1Q9GZY4 146 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 NT5C3AQ9H0P0 336 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 TMEM110-MUSTN1A8MSY1 372 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 C21orf2O43822 256 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 CDK8P49336 464 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 SMTNP53814 917 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 BIRC3Q13489 604 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 DPCR1Q3MIW9 517 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 SPECC1LQ69YQ0 1117 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 VTI1AQ96AJ9 217 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 PPP1R9BQ96SB3 815 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 BRIP1Q9BX63 1249 aa13.72□□□□□ -0.21
TCOF1-205ENST00000439160 CYP4A11Q02928 519 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 BMS1Q14692 1282 aaKnown RBP13.71□□□□□ -0.21
TCOF1-205ENST00000439160 TXNRD1Q16881 649 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 GRAMD1CQ8IYS0 662 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 FAM207AQ9NSI2 230 aaPredicted RBP13.71□□□□□ -0.21
TCOF1-205ENST00000439160 IMPACTQ9P2X3 320 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 DDX25Q9UHL0 483 aaKnown RBP13.71□□□□□ -0.21
TCOF1-205ENST00000439160 GINS2Q9Y248 185 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 PCDHB6Q9Y5E3 794 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 COBLO75128 1261 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 GJC1P36383 396 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 RBM6P78332 1123 aaKnown RBP13.71□□□□□ -0.21
TCOF1-205ENST00000439160 GPBP1Q86WP2 473 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 IL25Q9H293 177 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 TESPA1A2RU30 521 aaPredicted RBP13.71□□□□□ -0.21
TCOF1-205ENST00000439160 PPP6R2O75170 966 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 RHOXF2BP0C7M4 288 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 ITPK1Q13572 414 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 MASTLQ96GX5 879 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 RHOXF2Q9BQY4 288 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 AMNQ9BXJ7 453 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 SWAP70Q9UH65 585 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 PCDHA4Q9UN74 947 aa13.71□□□□□ -0.21
TCOF1-205ENST00000439160 NMT2O60551 498 aa13.71□□□□□ -0.22
TCOF1-205ENST00000439160 FLOT1O75955 427 aa13.71□□□□□ -0.22
TCOF1-205ENST00000439160 KIAA0754O94854 1291 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms