RNA–Protein interactions for RNA: ENST00000425413.5

UBR4-207, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 2,954 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-207ENST00000425413 ATP2C1P98194 919 aaPredicted RBP13.15□□□□□ -0.3
UBR4-207ENST00000425413 MLKLQ8NB16 471 aa13.15□□□□□ -0.3
UBR4-207ENST00000425413 CCDC150Q8NCX0 1101 aa13.15□□□□□ -0.3
UBR4-207ENST00000425413 CCDC112Q8NEF3 446 aa13.15□□□□□ -0.3
UBR4-207ENST00000425413 FERMT2Q96AC1 680 aa13.15□□□□□ -0.3
UBR4-207ENST00000425413 POLRMTO00411 1230 aaKnown RBP13.15□□□□□ -0.3
UBR4-207ENST00000425413 ADRA2BP18089 450 aa13.15□□□□□ -0.3
UBR4-207ENST00000425413 PPP4CP60510 307 aa13.15□□□□□ -0.3
UBR4-207ENST00000425413 KARSQ15046 597 aaKnown RBP13.15□□□□□ -0.3
UBR4-207ENST00000425413 FAM177A1Q8N128 213 aaPredicted RBP13.15□□□□□ -0.3
UBR4-207ENST00000425413 CEP95Q96GE4 821 aa13.15□□□□□ -0.3
UBR4-207ENST00000425413 TMX1Q9H3N1 280 aa13.15□□□□□ -0.3
UBR4-207ENST00000425413 FRMPD2Q68DX3 1309 aaPredicted RBP13.15□□□□□ -0.3
UBR4-207ENST00000425413 CBFA2T2O43439 604 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 RAD21O60216 631 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 ADKP55263 362 aaKnown RBP13.14□□□□□ -0.31
UBR4-207ENST00000425413 GRM4Q14833 912 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 TXNRD1Q16881 649 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 KANK3Q6NY19 840 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 KRT27Q7Z3Y8 459 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 PROM2Q8N271 834 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 CPLX3Q8WVH0 158 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 NHSQ6T4R5 1651 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 ATP2B2Q01814 1243 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 MTERF4Q7Z6M4 381 aaKnown RBP13.14□□□□□ -0.31
UBR4-207ENST00000425413 VSTM4Q8IW00 320 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 LRRC47Q8N1G4 583 aaKnown RBP13.14□□□□□ -0.31
UBR4-207ENST00000425413 TMEM60Q9H2L4 133 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 PCDHA4Q9UN74 947 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 COL24A1Q17RW2 1714 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 GPR75-ASB3A0A0A6YYF3 556 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 PPEF1O14829 653 aaPredicted RBP13.14□□□□□ -0.31
UBR4-207ENST00000425413 BBOX1O75936 387 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 NAPAP54920 295 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 RHBDL3P58872 404 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 CUL4BQ13620 913 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 CERKQ8TCT0 537 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 PRDM10Q9NQV6 1147 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 DAGLAQ9Y4D2 1042 aa13.14□□□□□ -0.31
UBR4-207ENST00000425413 G3V3G9 751 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 IL1R1P14778 569 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 CALML3P27482 149 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 DCAF8Q5TAQ9 597 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 PPP1R13BQ96KQ4 1090 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 CTNND2Q9UQB3 1225 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 THSD7AQ9UPZ6 1657 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 USP17L5A8MUK1 530 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 TEX33O43247 280 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 BMP15O95972 392 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 DPYDQ12882 1025 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 NT5DC1Q5TFE4 455 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 SYT10Q6XYQ8 523 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 CCDC34Q96HJ3 373 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 MTRQ99707 1265 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 DACH1Q9UI36 760 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 PCDHA6Q9UN73 950 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 PCDHA8Q9Y5H6 950 aa13.13□□□□□ -0.31
UBR4-207ENST00000425413 ZNF831Q5JPB2 1677 aa13.12□□□□□ -0.31
UBR4-207ENST00000425413 NRDCO43847 1150 aa13.12□□□□□ -0.31
UBR4-207ENST00000425413 PARP1P09874 1014 aaKnown RBP13.12□□□□□ -0.31
UBR4-207ENST00000425413 GTF2F1P35269 517 aaKnown RBP eCLIP13.12□□□□□ -0.31
UBR4-207ENST00000425413 DHX8Q14562 1220 aaKnown RBP13.12□□□□□ -0.31
UBR4-207ENST00000425413 LETM2Q2VYF4 491 aa13.12□□□□□ -0.31
UBR4-207ENST00000425413 IQUBQ8NA54 791 aa13.12□□□□□ -0.31
UBR4-207ENST00000425413 ENOX1Q8TC92 643 aaKnown RBP13.12□□□□□ -0.31
UBR4-207ENST00000425413 PIGSQ96S52 555 aa13.12□□□□□ -0.31
UBR4-207ENST00000425413 KCNQ5Q9NR82 932 aa13.12□□□□□ -0.31
UBR4-207ENST00000425413 TTF2Q9UNY4 1162 aaKnown RBP13.12□□□□□ -0.31
UBR4-207ENST00000425413 ONECUT3O60422 494 aaPredicted RBP13.12□□□□□ -0.31
UBR4-207ENST00000425413 RRAGBQ5VZM2 374 aa13.12□□□□□ -0.31
UBR4-207ENST00000425413 NYAP1Q6ZVC0 841 aa13.12□□□□□ -0.31
UBR4-207ENST00000425413 CERS5Q8N5B7 392 aa13.12□□□□□ -0.31
UBR4-207ENST00000425413 EEF2KMTQ96G04 330 aa13.12□□□□□ -0.31
UBR4-207ENST00000425413 UIMC1Q96RL1 719 aa13.12□□□□□ -0.31
UBR4-207ENST00000425413 ZC3H12CQ9C0D7 883 aaKnown RBP13.12□□□□□ -0.31
UBR4-207ENST00000425413 STXBP3O00186 592 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 CCT6AP40227 531 aaKnown RBP13.11□□□□□ -0.31
UBR4-207ENST00000425413 CACNB3P54284 484 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 PPP4R3BQ5MIZ7 849 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 JAKMIP3Q5VZ66 844 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 C16orf86Q6ZW13 317 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 GPCPD1Q9NPB8 672 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 DDX4Q9NQI0 724 aaKnown RBP13.11□□□□□ -0.31
UBR4-207ENST00000425413 SYNRGQ9UMZ2 1314 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 PALM3A6NDB9 673 aaPredicted RBP13.11□□□□□ -0.31
UBR4-207ENST00000425413 FAM196BA6NMK8 535 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 ZNF18P17022 549 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 STAT6P42226 847 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 GNAQP50148 359 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 DPP8Q6V1X1 898 aaPredicted RBP13.11□□□□□ -0.31
UBR4-207ENST00000425413 ZNF622Q969S3 477 aaKnown RBP eCLIP13.11□□□□□ -0.313e-12■□□□□ 11.2
UBR4-207ENST00000425413 BIN2Q9UBW5 565 aaPredicted RBP13.11□□□□□ -0.31
UBR4-207ENST00000425413 MPHOSPH10O00566 681 aaKnown RBP13.11□□□□□ -0.31
UBR4-207ENST00000425413 CBX1P83916 185 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 SH3RF1Q7Z6J0 888 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 SPATA20Q8TB22 786 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 DBNDD1Q9H9R9 158 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 ZNF287Q9HBT7 754 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 BARHL2Q9NY43 387 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 GDAQ9Y2T3 454 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms