RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 BRINP1O60477 761 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 TCEA3O75764 348 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 FBXO21O94952 628 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 APBA3O96018 575 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 PABPC1P11940 636 aaKnown RBP6.36□□□□□ -1.39
VPS13A-207ENST00000419472 GGCXP38435 758 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 KCNC4Q03721 635 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 LRFN4Q6PJG9 635 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 EPM2AIP1Q7L775 607 aaPredicted RBP6.36□□□□□ -1.39
VPS13A-207ENST00000419472 LRRN4CLQ8ND94 238 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 SLC30A3Q99726 388 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 EFCC1Q9HA90 598 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.36□□□□□ -1.39
VPS13A-207ENST00000419472 NRBP1Q9UHY1 535 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 PCDHA4Q9UN74 947 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 ZNF891A8MT65 544 aaPredicted RBP6.35□□□□□ -1.39
VPS13A-207ENST00000419472 CHURC1-FNTBB4DL54 471 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 EFSO43281 561 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 THBS1P07996 1170 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 MYBL2P10244 700 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 PLCG1P19174 1290 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 POU3F2P20265 443 aaPredicted RBP6.35□□□□□ -1.39
VPS13A-207ENST00000419472 MAP7Q14244 749 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 HSP90AA2PQ14568 343 aaPredicted RBP6.35□□□□□ -1.39
VPS13A-207ENST00000419472 INTS3Q68E01 1043 aaKnown RBP6.35□□□□□ -1.39
VPS13A-207ENST00000419472 ANKRD42Q8N9B4 389 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 USP7Q93009 1102 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 FGD4Q96M96 766 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 TSEN34Q9BSV6 310 aaKnown RBP6.35□□□□□ -1.39
VPS13A-207ENST00000419472 CNNM2Q9H8M5 875 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.35□□□□□ -1.39
VPS13A-207ENST00000419472 SWAP70Q9UH65 585 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 DACH1Q9UI36 760 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 TNFRSF10CO14798 259 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 PYGMP11217 842 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 NSMFQ6X4W1 530 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 ZNF227Q86WZ6 799 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 GPATCH11Q8N954 259 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 GPBAR1Q8TDU6 330 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 BSNDQ8WZ55 320 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 CAMKK2Q96RR4 588 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 C9IYK1 514 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 MYL3P08590 195 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 FAM163BP0C2L3 166 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 GRB10Q13322 594 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 SF1Q15637 639 aaKnown RBP6.35□□□□□ -1.39
VPS13A-207ENST00000419472 TRIM61Q5EBN2 209 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 C6orf118Q5T5N4 469 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 AHI1Q8N157 1196 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 NXPE1Q8N323 547 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 STRBPQ96SI9 672 aaKnown RBP6.35□□□□□ -1.39
VPS13A-207ENST00000419472 GAS2L1Q99501 681 aaPredicted RBP6.35□□□□□ -1.39
VPS13A-207ENST00000419472 IFT22Q9H7X7 185 aa6.35□□□□□ -1.39
VPS13A-207ENST00000419472 SIM2Q14190 667 aaPredicted RBP6.34□□□□□ -1.39
VPS13A-207ENST00000419472 ODF1Q14990 250 aa6.34□□□□□ -1.39
VPS13A-207ENST00000419472 SAMD5Q5TGI4 173 aa6.34□□□□□ -1.39
VPS13A-207ENST00000419472 CEP135Q66GS9 1140 aa6.34□□□□□ -1.39
VPS13A-207ENST00000419472 KIFC2Q96AC6 838 aa6.34□□□□□ -1.39
VPS13A-207ENST00000419472 IGFLR1Q9H665 355 aa6.34□□□□□ -1.39
VPS13A-207ENST00000419472 PRDM11Q9NQV5 511 aa6.34□□□□□ -1.39
VPS13A-207ENST00000419472 AAASQ9NRG9 546 aa6.34□□□□□ -1.39
VPS13A-207ENST00000419472 CEP162Q5TB80 1403 aa6.34□□□□□ -1.39
VPS13A-207ENST00000419472 CFAP69A5D8W1 941 aa6.34□□□□□ -1.4
VPS13A-207ENST00000419472 SRGNP10124 158 aa6.34□□□□□ -1.4
VPS13A-207ENST00000419472 SUMO1P63165 101 aaKnown RBP6.34□□□□□ -1.4
VPS13A-207ENST00000419472 PCBP2Q15366 365 aaKnown RBP eCLIP6.34□□□□□ -1.4
VPS13A-207ENST00000419472 CFAP100Q494V2 611 aa6.34□□□□□ -1.4
VPS13A-207ENST00000419472 CDCP2Q5VXM1 449 aa6.34□□□□□ -1.4
VPS13A-207ENST00000419472 CXorf57Q6NSI4 855 aaKnown RBP6.34□□□□□ -1.4
VPS13A-207ENST00000419472 ATG3Q9NT62 314 aa6.34□□□□□ -1.4
VPS13A-207ENST00000419472 RAPGEF6Q8TEU7 1601 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 MAP3K4Q9Y6R4 1608 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 CFAP43Q8NDM7 1665 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 LOC102724428A0A0B4J2F2 783 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 FIGNL2A6NMB9 653 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 CBFA2T2O43439 604 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 BPIP17213 487 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 SIK1P57059 783 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 SPEM2Q0P670 501 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 TMEM192Q8IY95 271 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 FAM163AQ96GL9 167 aaPredicted RBP6.33□□□□□ -1.4
VPS13A-207ENST00000419472 ACSBG1Q96GR2 724 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 HAUS7Q99871 368 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 KRTAP3-3Q9BYR6 98 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 KRTAP3-2Q9BYR7 98 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 SLC26A4O43511 780 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 MYBP10242 640 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 HALP42357 657 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 HTR3AP46098 478 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 SAFBQ15424 915 aaKnown RBP eCLIP6.33□□□□□ -1.4
VPS13A-207ENST00000419472 WDR44Q5JSH3 913 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 PIK3R6Q5UE93 754 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 XRRA1Q6P2D8 792 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 GSTCDQ8NEC7 633 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 CLIP3Q96DZ5 547 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 SLC6A18Q96N87 628 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 PKD2L1Q9P0L9 805 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 FNIP2Q9P278 1114 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 TRAF6Q9Y4K3 522 aa6.33□□□□□ -1.4
VPS13A-207ENST00000419472 PPP2R3BQ9Y5P8 575 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms