RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 LMAN1P49257 510 aa9.46□□□□□ -0.89
HMGB1-203ENST00000341423 CXCL9Q07325 125 aa9.46□□□□□ -0.89
HMGB1-203ENST00000341423 BFSP1Q12934 665 aa9.46□□□□□ -0.89
HMGB1-203ENST00000341423 SPDYE2Q495Y8 402 aa9.46□□□□□ -0.89
HMGB1-203ENST00000341423 FAM122AQ96E09 287 aa9.46□□□□□ -0.89
HMGB1-203ENST00000341423 ATP10DQ9P241 1426 aa9.46□□□□□ -0.89
HMGB1-203ENST00000341423 CNTNAP4Q9C0A0 1308 aa9.46□□□□□ -0.89
HMGB1-203ENST00000341423 GAS7O60861 476 aa9.46□□□□□ -0.89
HMGB1-203ENST00000341423 GAS8O95995 478 aa9.46□□□□□ -0.89
HMGB1-203ENST00000341423 HMGCRP04035 888 aa9.46□□□□□ -0.89
HMGB1-203ENST00000341423 ENOX2Q16206 610 aaKnown RBP9.46□□□□□ -0.89
HMGB1-203ENST00000341423 HAUS3Q68CZ6 603 aa9.46□□□□□ -0.89
HMGB1-203ENST00000341423 NOP9Q86U38 636 aaKnown RBP9.46□□□□□ -0.89
HMGB1-203ENST00000341423 UCMAQ8WVF2 138 aa9.46□□□□□ -0.89
HMGB1-203ENST00000341423 CCER2I3L3R5 266 aa9.46□□□□□ -0.9
HMGB1-203ENST00000341423 CXCL11O14625 94 aa9.46□□□□□ -0.9
HMGB1-203ENST00000341423 ST8SIA6P61647 398 aa9.46□□□□□ -0.9
HMGB1-203ENST00000341423 MKRN4PQ13434 485 aaPredicted RBP9.46□□□□□ -0.9
HMGB1-203ENST00000341423 PPP2R5AQ15172 486 aa9.46□□□□□ -0.9
HMGB1-203ENST00000341423 FOXD4L6Q3SYB3 417 aaPredicted RBP9.46□□□□□ -0.9
HMGB1-203ENST00000341423 FOXD4L3Q6VB84 417 aaPredicted RBP9.46□□□□□ -0.9
HMGB1-203ENST00000341423 TMEM179Q6ZVK1 233 aa9.46□□□□□ -0.9
HMGB1-203ENST00000341423 NLGN2Q8NFZ4 835 aa9.46□□□□□ -0.9
HMGB1-203ENST00000341423 EVI5LQ96CN4 794 aa9.46□□□□□ -0.9
HMGB1-203ENST00000341423 TECPR2O15040 1411 aa9.46□□□□□ -0.9
HMGB1-203ENST00000341423 ZRSR2Q15696 482 aaKnown RBP9.46□□□□□ -0.9
HMGB1-203ENST00000341423 WDR44Q5JSH3 913 aa9.46□□□□□ -0.9
HMGB1-203ENST00000341423 PSRC1Q6PGN9 363 aaPredicted RBP9.46□□□□□ -0.9
HMGB1-203ENST00000341423 EMILIN2Q9BXX0 1053 aa9.46□□□□□ -0.9
HMGB1-203ENST00000341423 TACC3Q9Y6A5 838 aa9.46□□□□□ -0.9
HMGB1-203ENST00000341423 A0A1B0GUL7 405 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 MCM5P33992 734 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 FILIP1Q7Z7B0 1213 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 ZFP91Q96JP5 570 aaPredicted RBP9.45□□□□□ -0.9
HMGB1-203ENST00000341423 PAG1Q9NWQ8 432 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 USP42Q9H9J4 1324 aaKnown RBP9.45□□□□□ -0.9
HMGB1-203ENST00000341423 STX10O60499 249 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 URODP06132 367 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 CPB1P15086 417 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 POLR2BP30876 1174 aaKnown RBP9.45□□□□□ -0.9
HMGB1-203ENST00000341423 METAP2P50579 478 aaKnown RBP eCLIP9.45□□□□□ -0.9
HMGB1-203ENST00000341423 AK2P54819 239 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 CHRDL2Q6WN34 429 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 RNF207Q6ZRF8 634 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 FAM167AQ96KS9 214 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 THG1LQ9NWX6 298 aaKnown RBP9.45□□□□□ -0.9
HMGB1-203ENST00000341423 NPC1L1Q9UHC9 1359 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 KINO60870 393 aaKnown RBP9.45□□□□□ -0.9
HMGB1-203ENST00000341423 CTSHP09668 335 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 KRT33BQ14525 404 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 C11orf49Q9H6J7 331 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 CD209Q9NNX6 404 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 RABGAP1Q9Y3P9 1069 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 ITSN2Q9NZM3 1697 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 MEI4A8MW99 385 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 CTNNB1P35222 781 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 MDM2Q00987 491 aaPredicted RBP9.45□□□□□ -0.9
HMGB1-203ENST00000341423 NUCB1Q02818 461 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 ANO1Q5XXA6 986 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 PYM1Q9BRP8 204 aaKnown RBP9.45□□□□□ -0.9
HMGB1-203ENST00000341423 MACROD2A1Z1Q3 448 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 ADM5C9JUS6 153 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 GH2P01242 217 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 BBS5Q8N3I7 341 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 PRIMPOLQ96LW4 560 aa9.45□□□□□ -0.9
HMGB1-203ENST00000341423 ZBTB43O43298 467 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 CAPN2P17655 700 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 DAPK3O43293 454 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 SH3BP5O60239 455 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 CYBBP04839 570 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 AKR1A1P14550 325 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 BRPF1P55201 1214 aaPredicted RBP9.44□□□□□ -0.9
HMGB1-203ENST00000341423 TFAP4Q01664 338 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 CAPN9O14815 690 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 CACNB3P54284 484 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 OSBP2Q969R2 916 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 XAGE2Q96GT9 111 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 CCDC94Q9BW85 323 aaPredicted RBP9.44□□□□□ -0.9
HMGB1-203ENST00000341423 CCDC113Q9H0I3 377 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 RPF1Q9H9Y2 349 aaKnown RBP9.44□□□□□ -0.9
HMGB1-203ENST00000341423 GPRC5DQ9NZD1 345 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 RIPOR2Q9Y4F9 1068 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 XYLBO75191 536 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 CCDC172P0C7W6 258 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 CDC42EP1Q00587 391 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 CCDC14Q49A88 953 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 PREPLQ4J6C6 727 aaPredicted RBP9.44□□□□□ -0.9
HMGB1-203ENST00000341423 HDDC3Q8N4P3 179 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 CCDC114Q96M63 670 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 RNF146Q9NTX7 359 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 EHD2Q9NZN4 543 aa9.44□□□□□ -0.9
HMGB1-203ENST00000341423 DCCP43146 1447 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 GYS1P13807 737 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 SFPQP23246 707 aaKnown RBP eCLIP9.43□□□□□ -0.9
HMGB1-203ENST00000341423 CCDC40Q4G0X9 1142 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 FIBCD1Q8N539 461 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 SNX19Q92543 992 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 SMARCE1Q969G3 411 aa9.43□□□□□ -0.9
HMGB1-203ENST00000341423 TOPORSQ9NS56 1045 aaPredicted RBP9.43□□□□□ -0.9
HMGB1-203ENST00000341423 GINM1Q9NU53 330 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms