RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 IGSF22Q8N9C0 903 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 KIAA1524Q8TCG1 905 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 DDX27Q96GQ7 796 aaKnown RBP9.1□□□□□ -0.95
VPS41-202ENST00000310301 RIPOR2Q9Y4F9 1068 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 TTC41PQ6P2S7 1318 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 RPS12P25398 132 aaKnown RBP9.1□□□□□ -0.95
VPS41-202ENST00000310301 DIXDC1Q155Q3 683 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 PHLDB2Q86SQ0 1253 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 COL23A1Q86Y22 540 aaPredicted RBP9.1□□□□□ -0.95
VPS41-202ENST00000310301 BSDC1Q9NW68 430 aaPredicted RBP9.1□□□□□ -0.95
VPS41-202ENST00000310301 FRMD3A2A2Y4 597 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 RTN1Q16799 776 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 ZNF365Q70YC5 407 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 ANKRD44Q8N8A2 993 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 CBX8Q9HC52 389 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 TNS2Q63HR2 1409 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 A0A1B0GVL5 298 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 TCP10L2B9ZVM9 353 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 PPFIA1Q13136 1202 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 SEL1L2Q5TEA6 688 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 CYP26C1Q6V0L0 522 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 XAGE2Q96GT9 111 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 TMEM106CQ9BVX2 250 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.1□□□□□ -0.95
VPS41-202ENST00000310301 UTP11Q9Y3A2 253 aaKnown RBP9.1□□□□□ -0.95
VPS41-202ENST00000310301 SUSD4Q5VX71 490 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 TMED8Q6PL24 325 aaPredicted RBP9.1□□□□□ -0.95
VPS41-202ENST00000310301 RUFY4Q6ZNE9 571 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 ZNF277Q9NRM2 450 aaPredicted RBP9.1□□□□□ -0.95
VPS41-202ENST00000310301 TXNDC16Q9P2K2 825 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 SAMM50Q9Y512 469 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 RNF113AO15541 343 aaKnown RBP9.09□□□□□ -0.95
VPS41-202ENST00000310301 CALM1P0DP23 149 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 CALM2P0DP24 149 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 CALM3P0DP25 149 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 CHRNA5P30532 468 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 LIG3P49916 1009 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 CCDC62Q6P9F0 684 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 LINC00116Q8NCU8 138 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 TPX2Q9ULW0 747 aaKnown RBP9.09□□□□□ -0.95
VPS41-202ENST00000310301 USP42Q9H9J4 1324 aaKnown RBP9.09□□□□□ -0.95
VPS41-202ENST00000310301 TTC36A6NLP5 189 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 MUM1Q2TAK8 710 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 MRRFQ96E11 262 aaKnown RBP9.09□□□□□ -0.95
VPS41-202ENST00000310301 NUF2Q9BZD4 464 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 TRIM75PA6NK02 468 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 MCM7P33993 719 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 SLC4A8Q2Y0W8 1093 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 VPS52Q8N1B4 723 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 SPATA5Q8NB90 893 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 ERMNQ8TAM6 284 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 CTNND2Q9UQB3 1225 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 GNGT1P63211 74 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 TCP10Q12799 353 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 SND1Q7KZF4 910 aaKnown RBP eCLIP9.09□□□□□ -0.95
VPS41-202ENST00000310301 TAOK1Q7L7X3 1001 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 ARHGAP24Q8N264 748 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 GPR161Q8N6U8 529 aaKnown RBP9.09□□□□□ -0.95
VPS41-202ENST00000310301 PPANQ9NQ55 473 aaKnown RBP9.09□□□□□ -0.95
VPS41-202ENST00000310301 IMPACTQ9P2X3 320 aa9.09□□□□□ -0.95
VPS41-202ENST00000310301 FANCCQ00597 558 aa9.09□□□□□ -0.96
VPS41-202ENST00000310301 FHDC1Q9C0D6 1143 aaPredicted RBP9.09□□□□□ -0.96
VPS41-202ENST00000310301 ATP10DQ9P241 1426 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 CETN3O15182 167 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 GMNNO75496 209 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 PSMD6Q15008 389 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 ERCC6LQ2NKX8 1250 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 SH2D4BQ5SQS7 431 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 SDCCAG8Q86SQ7 713 aaPredicted RBP9.08□□□□□ -0.96
VPS41-202ENST00000310301 TRIM35Q9UPQ4 493 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 ELP1O95163 1332 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 MROH1Q8NDA8 1641 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 ACTN4O43707 911 aaKnown RBP9.08□□□□□ -0.96
VPS41-202ENST00000310301 ERCC5P28715 1186 aaPredicted RBP9.08□□□□□ -0.96
VPS41-202ENST00000310301 APOBRQ0VD83 1088 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 MAP7Q14244 749 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 MCMDC2Q4G0Z9 681 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 SMARCC2Q8TAQ2 1214 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 EPSTI1Q96J88 318 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 PTPDC1A2A3K4 754 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 RGL2O15211 777 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 NCBP1Q09161 790 aaKnown RBP9.08□□□□□ -0.96
VPS41-202ENST00000310301 NMIQ13287 307 aaPredicted RBP9.08□□□□□ -0.96
VPS41-202ENST00000310301 RUFY3Q7L099 469 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 GOLGA5Q8TBA6 731 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 CHURC1Q8WUH1 139 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 VPS16Q9H269 839 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 FAM169AQ9Y6X4 670 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 TRIM14Q14142 442 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 LONRF3Q496Y0 759 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 IFIT1BQ5T764 474 aaKnown RBP9.08□□□□□ -0.96
VPS41-202ENST00000310301 HEATR3Q7Z4Q2 680 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 GSDMBQ8TAX9 411 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 SUCLG2Q96I99 432 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 USP26Q9BXU7 913 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 TRIM31Q9BZY9 425 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 DHX36Q9H2U1 1008 aaKnown RBP9.08□□□□□ -0.96
VPS41-202ENST00000310301 CLSTN2Q9H4D0 955 aa9.08□□□□□ -0.96
VPS41-202ENST00000310301 PA2G4Q9UQ80 394 aaKnown RBP9.08□□□□□ -0.96
VPS41-202ENST00000310301 ECE2O60344 883 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms