RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 KAT14Q9H8E8 782 aa12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 CWC22Q9HCG8 908 aaKnown RBP12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 HOXC10Q9NYD6 342 aa12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 ZSWIM5Q9P217 1185 aa12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 CTDP1Q9Y5B0 961 aaPredicted RBP12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 SPDYE16A6NNV3 312 aaPredicted RBP12.91□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 EPB41L2O43491 1005 aaKnown RBP12.91□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 DSG3P32926 999 aa12.91□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 NOVP48745 357 aa12.91□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 LBX2Q6XYB7 198 aa12.91□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 STOX1Q6ZVD7 989 aa12.91□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 MB21D1Q8N884 522 aa12.91□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 GPRC5AQ8NFJ5 357 aa12.91□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 DCAF4Q8WV16 495 aa12.91□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 GMCL1Q96IK5 515 aa12.91□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 NUP88Q99567 741 aaPredicted RBP12.91□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 SLF1Q9BQI6 1058 aa12.91□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 EFCC1Q9HA90 598 aa12.91□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 FEM1BQ9UK73 627 aa12.91□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 TRIM17Q9Y577 477 aa12.91□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 IFIT3O14879 490 aaKnown RBP12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 FMNL1O95466 1100 aaPredicted RBP12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 GNRH1P01148 92 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 HOXD10P28358 340 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 MCM5P33992 734 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 PSMC4P43686 418 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 STAT2P52630 851 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 ERVK-9P63128 1117 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 ERVK-24P63145 666 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 CCNA1P78396 465 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 WTAPQ15007 396 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 PKN2Q16513 984 aaKnown RBP12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 CYB5R4Q7L1T6 521 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 FAM160B2Q86V87 743 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 ENAHQ8N8S7 591 aaPredicted RBP12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 PNMA1Q8ND90 353 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 CHMP4CQ96CF2 233 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 ATG4CQ96DT6 458 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 MORF4L1Q9UBU8 362 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 PPP1R9AQ9ULJ8 1098 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 RABGAP1Q9Y3P9 1069 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 TAF6LQ9Y6J9 622 aa12.9□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 ZNFX1Q9P2E3 1918 aaKnown RBP12.9□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 TNPO2O14787 897 aaKnown RBP12.89□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 PLS1Q14651 629 aa12.89□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 TMEM67Q5HYA8 995 aa12.89□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 COL13A1Q5TAT6 717 aaPredicted RBP12.89□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 RCSD1Q6JBY9 416 aa12.89□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 OTOP1Q7RTM1 612 aa12.89□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 MB21D2Q8IYB1 491 aaPredicted RBP12.89□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 NKX2-3Q8TAU0 364 aa12.89□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 CHURC1Q8WUH1 139 aa12.89□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 KIFC2Q96AC6 838 aa12.89□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 COA7Q96BR5 231 aa12.89□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 FBXO28Q9NVF7 368 aa12.89□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 PLXNA1Q9UIW2 1896 aa12.89□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 TMEM232C9JQI7 657 aa12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 PRC1O43663 620 aa12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 PDHBP11177 359 aa12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 MAPK4P31152 587 aa12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 HSPA4P34932 840 aa12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 WDR78Q5VTH9 848 aa12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 KCTD1Q719H9 257 aa12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 CHST3Q7LGC8 479 aa12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 TNS4Q8IZW8 715 aa12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 PRPF38AQ8NAV1 312 aaKnown RBP12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 TMEM87BQ96K49 555 aa12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 NEK1Q96PY6 1258 aa12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 MTA3Q9BTC8 594 aa12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 ARHGAP39Q9C0H5 1083 aa12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 TXNRD2Q9NNW7 524 aa12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 RBPJLQ9UBG7 517 aa12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 RBBP6Q7Z6E9 1792 aaKnown RBP12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 ZNF236Q9UL36 1845 aa12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 FRMPD2Q68DX3 1309 aaPredicted RBP12.88□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 ZBED4O75132 1171 aa12.87□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 HMGB1P09429 215 aaKnown RBP12.87□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 FDX1P10109 184 aa12.87□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 PRMT2P55345 433 aa12.87□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 SEC23AQ15436 765 aa12.87□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 TSGA10IPQ3SY00 556 aa12.87□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 GPATCH4Q5T3I0 446 aaKnown RBP12.87□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 NFXL1Q6ZNB6 911 aa12.87□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 CATIPQ7Z7H3 387 aa12.87□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 ANKS1AQ92625 1134 aa12.87□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 TRIM47Q96LD4 638 aa12.87□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 MCOLN1Q9GZU1 580 aa12.87□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 SPATC1LQ9H0A9 340 aa12.87□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 BTBD7Q9P203 1132 aa12.87□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 IVNS1ABPQ9Y6Y0 642 aa12.87□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 CCDC69A6NI79 296 aa12.86□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 VWA5AO00534 786 aa12.86□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 PLA2G6O60733 806 aa12.86□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 CNMDO75829 334 aa12.86□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 PSMA5P28066 241 aa12.86□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 COPB2P35606 906 aa12.86□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 ANTXR2P58335 489 aa12.86□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 FGD1P98174 961 aa12.86□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 ZNF543Q08ER8 600 aa12.86□□□□□ -0.35
CSPG4P1Y-201ENST00000306641 ASPRV1Q53RT3 343 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms