RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 DPF2Q92785 391 aa27.29■■□□□ 1.96
TRIM54-201ENST00000296098 PAGE5Q96GU1 130 aa27.29■■□□□ 1.96
TRIM54-201ENST00000296098 HMGB2P26583 209 aaKnown RBP27.28■■□□□ 1.96
TRIM54-201ENST00000296098 FMR1Q06787 632 aaKnown RBP eCLIP27.28■■□□□ 1.96
TRIM54-201ENST00000296098 ENOX1Q8TC92 643 aaKnown RBP27.28■■□□□ 1.96
TRIM54-201ENST00000296098 LZTS2Q9BRK4 669 aa27.28■■□□□ 1.96
TRIM54-201ENST00000296098 KCND1Q9NSA2 647 aa27.28■■□□□ 1.96
TRIM54-201ENST00000296098 PALM3A6NDB9 673 aaPredicted RBP27.28■■□□□ 1.96
TRIM54-201ENST00000296098 RBM10P98175 930 aaKnown RBP27.28■■□□□ 1.96
TRIM54-201ENST00000296098 SLC35G1Q2M3R5 365 aa27.28■■□□□ 1.96
TRIM54-201ENST00000296098 NEDD1Q8NHV4 660 aa27.28■■□□□ 1.96
TRIM54-201ENST00000296098 MTMR7Q9Y216 660 aa27.28■■□□□ 1.96
TRIM54-201ENST00000296098 NRXN2Q9P2S2 1712 aa27.27■■□□□ 1.96
TRIM54-201ENST00000296098 USP27XA6NNY8 438 aa27.27■■□□□ 1.96
TRIM54-201ENST00000296098 RIOK3O14730 519 aaKnown RBP27.27■■□□□ 1.96
TRIM54-201ENST00000296098 AFMP43652 599 aa27.27■■□□□ 1.96
TRIM54-201ENST00000296098 WWC2Q6AWC2 1192 aa27.27■■□□□ 1.96
TRIM54-201ENST00000296098 DAGLBQ8NCG7 672 aa27.27■■□□□ 1.96
TRIM54-201ENST00000296098 QSER1Q2KHR3 1735 aa27.27■■□□□ 1.96
TRIM54-201ENST00000296098 CYTH3O43739 400 aa27.26■■□□□ 1.95
TRIM54-201ENST00000296098 NRDCO43847 1150 aa27.26■■□□□ 1.95
TRIM54-201ENST00000296098 HSP90AA2PQ14568 343 aaPredicted RBP27.26■■□□□ 1.95
TRIM54-201ENST00000296098 PYM1Q9BRP8 204 aaKnown RBP27.26■■□□□ 1.95
TRIM54-201ENST00000296098 ATP6V0A2Q9Y487 856 aa27.26■■□□□ 1.95
TRIM54-201ENST00000296098 NFE2L3Q9Y4A8 694 aa27.26■■□□□ 1.95
TRIM54-201ENST00000296098 GALNT17Q6IS24 598 aa27.26■■□□□ 1.95
TRIM54-201ENST00000296098 TYW1BQ6NUM6 668 aa27.26■■□□□ 1.95
TRIM54-201ENST00000296098 HEATR3Q7Z4Q2 680 aa27.26■■□□□ 1.95
TRIM54-201ENST00000296098 VSTM4Q8IW00 320 aa27.26■■□□□ 1.95
TRIM54-201ENST00000296098 CCAR2Q8N163 923 aaKnown RBP27.26■■□□□ 1.95
TRIM54-201ENST00000296098 DAGLAQ9Y4D2 1042 aa27.26■■□□□ 1.95
TRIM54-201ENST00000296098 ERCC5P28715 1186 aaPredicted RBP27.25■■□□□ 1.95
TRIM54-201ENST00000296098 GTF2IP78347 998 aa27.25■■□□□ 1.95
TRIM54-201ENST00000296098 ARL6IP4Q66PJ3 421 aaKnown RBP27.25■■□□□ 1.95
TRIM54-201ENST00000296098 TRMT44Q8IYL2 757 aaKnown RBP27.25■■□□□ 1.95
TRIM54-201ENST00000296098 FAM177A1Q8N128 213 aaPredicted RBP27.25■■□□□ 1.95
TRIM54-201ENST00000296098 PROM2Q8N271 834 aa27.25■■□□□ 1.95
TRIM54-201ENST00000296098 COA1Q9GZY4 146 aa27.25■■□□□ 1.95
TRIM54-201ENST00000296098 BARHL2Q9NY43 387 aa27.25■■□□□ 1.95
TRIM54-201ENST00000296098 CCDC194A0A1B0GVG4 234 aa27.24■■□□□ 1.95
TRIM54-201ENST00000296098 M0R2N6 131 aa27.24■■□□□ 1.95
TRIM54-201ENST00000296098 STXBP3O00186 592 aa27.24■■□□□ 1.95
TRIM54-201ENST00000296098 ZNF18P17022 549 aa27.24■■□□□ 1.95
TRIM54-201ENST00000296098 DPYDQ12882 1025 aa27.24■■□□□ 1.95
TRIM54-201ENST00000296098 CT47A1Q5JQC4 288 aaPredicted RBP27.24■■□□□ 1.95
TRIM54-201ENST00000296098 SPZ1Q9BXG8 430 aa27.24■■□□□ 1.95
TRIM54-201ENST00000296098 RASGRP4Q8TDF6 673 aa27.24■■□□□ 1.95
TRIM54-201ENST00000296098 GSDMAQ96QA5 445 aa27.24■■□□□ 1.95
TRIM54-201ENST00000296098 RIMBP2O15034 1052 aa27.23■■□□□ 1.95
TRIM54-201ENST00000296098 KCNJ6P48051 423 aa27.23■■□□□ 1.95
TRIM54-201ENST00000296098 E2F4Q16254 413 aa27.23■■□□□ 1.95
TRIM54-201ENST00000296098 IL17AQ16552 155 aa27.23■■□□□ 1.95
TRIM54-201ENST00000296098 NYAP1Q6ZVC0 841 aa27.23■■□□□ 1.95
TRIM54-201ENST00000296098 IQUBQ8NA54 791 aa27.23■■□□□ 1.95
TRIM54-201ENST00000296098 EP400Q96L91 3159 aa27.23■■□□□ 1.95
TRIM54-201ENST00000296098 KLRF2D3W0D1 207 aa27.23■■□□□ 1.95
TRIM54-201ENST00000296098 PARP1P09874 1014 aaKnown RBP27.23■■□□□ 1.95
TRIM54-201ENST00000296098 GOLGA8HP0CJ92 632 aa27.23■■□□□ 1.95
TRIM54-201ENST00000296098 CEP135Q66GS9 1140 aa27.23■■□□□ 1.95
TRIM54-201ENST00000296098 PCDHA6Q9UN73 950 aa27.23■■□□□ 1.95
TRIM54-201ENST00000296098 SUGT1Q9Y2Z0 365 aa27.23■■□□□ 1.95
TRIM54-201ENST00000296098 PAXBP1Q9Y5B6 917 aa27.23■■□□□ 1.95
TRIM54-201ENST00000296098 PCDHA8Q9Y5H6 950 aa27.23■■□□□ 1.95
TRIM54-201ENST00000296098 TMEM232C9JQI7 657 aa27.22■■□□□ 1.95
TRIM54-201ENST00000296098 TOP1P11387 765 aaKnown RBP27.22■■□□□ 1.95
TRIM54-201ENST00000296098 LONP1P36776 959 aaKnown RBP27.22■■□□□ 1.95
TRIM54-201ENST00000296098 C4orf32Q8N8J7 132 aa27.22■■□□□ 1.95
TRIM54-201ENST00000296098 INTS13Q9NVM9 706 aa27.22■■□□□ 1.95
TRIM54-201ENST00000296098 PLIN4Q96Q06 1357 aa27.21■■□□□ 1.95
TRIM54-201ENST00000296098 PTPN14Q15678 1187 aa27.21■■□□□ 1.95
TRIM54-201ENST00000296098 HSP90AA4PQ58FG1 418 aa27.21■■□□□ 1.95
TRIM54-201ENST00000296098 RASGRP2Q7LDG7 609 aa27.21■■□□□ 1.95
TRIM54-201ENST00000296098 CEP95Q96GE4 821 aa27.21■■□□□ 1.95
TRIM54-201ENST00000296098 TRMT1Q9NXH9 659 aaKnown RBP27.21■■□□□ 1.95
TRIM54-201ENST00000296098 CDK11BP21127 795 aaKnown RBP27.21■■□□□ 1.95
TRIM54-201ENST00000296098 CASP1P29466 404 aa27.21■■□□□ 1.95
TRIM54-201ENST00000296098 MED15Q96RN5 788 aa27.21■■□□□ 1.95
TRIM54-201ENST00000296098 COL11A2P13942 1736 aaPredicted RBP27.21■■□□□ 1.95
TRIM54-201ENST00000296098 SYNRGQ9UMZ2 1314 aa27.2■■□□□ 1.95
TRIM54-201ENST00000296098 SRGNP10124 158 aa27.2■■□□□ 1.94
TRIM54-201ENST00000296098 TXLNAP40222 546 aa27.2■■□□□ 1.94
TRIM54-201ENST00000296098 PDXDC2PQ6P474 469 aa27.2■■□□□ 1.94
TRIM54-201ENST00000296098 NLGN1Q8N2Q7 840 aa27.2■■□□□ 1.94
TRIM54-201ENST00000296098 CCDC112Q8NEF3 446 aa27.2■■□□□ 1.94
TRIM54-201ENST00000296098 NPR1P16066 1061 aa27.19■■□□□ 1.94
TRIM54-201ENST00000296098 CCDC12Q8WUD4 166 aaPredicted RBP27.19■■□□□ 1.94
TRIM54-201ENST00000296098 MYH8P13535 1937 aa27.19■■□□□ 1.94
TRIM54-201ENST00000296098 NOVP48745 357 aa27.19■■□□□ 1.94
TRIM54-201ENST00000296098 E4F1Q66K89 784 aaPredicted RBP27.19■■□□□ 1.94
TRIM54-201ENST00000296098 TSC1Q92574 1164 aa27.19■■□□□ 1.94
TRIM54-201ENST00000296098 MAP7D2Q96T17 732 aa27.19■■□□□ 1.94
TRIM54-201ENST00000296098 PICALMQ13492 652 aa27.18■■□□□ 1.94
TRIM54-201ENST00000296098 CUL4BQ13620 913 aa27.18■■□□□ 1.94
TRIM54-201ENST00000296098 ZC3H12CQ9C0D7 883 aaKnown RBP27.18■■□□□ 1.94
TRIM54-201ENST00000296098 PSDA5PKW4 1024 aaPredicted RBP27.17■■□□□ 1.94
TRIM54-201ENST00000296098 CD44P16070 742 aaKnown RBP27.17■■□□□ 1.94
TRIM54-201ENST00000296098 NAPAP54920 295 aa27.17■■□□□ 1.94
TRIM54-201ENST00000296098 INF2Q27J81 1249 aa27.17■■□□□ 1.94
TRIM54-201ENST00000296098 USP17L2Q6R6M4 530 aa27.17■■□□□ 1.94
TRIM54-201ENST00000296098 RRP36Q96EU6 259 aaKnown RBP27.17■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms