RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W CCT7P42943 550 aaKnown RBP5.98□□□□□ -1.45
PRP40YKL012W MUK1Q02866 612 aa5.98□□□□□ -1.45
PRP40YKL012W YEH1Q07804 573 aa5.98□□□□□ -1.45
PRP40YKL012W KES1P35844 434 aaKnown RBP5.98□□□□□ -1.45
PRP40YKL012W UBP5P39944 805 aa5.98□□□□□ -1.45
PRP40YKL012W SXM1Q04175 944 aaKnown RBP5.98□□□□□ -1.45
PRP40YKL012W RAD33Q04231 177 aa5.98□□□□□ -1.45
PRP40YKL012W YLR352WQ06479 807 aa5.98□□□□□ -1.45
PRP40YKL012W YPL272CQ08984 517 aa5.98□□□□□ -1.45
PRP40YKL012W GET3Q12154 354 aaKnown RBP5.98□□□□□ -1.45
PRP40YKL012W ACF2Q12168 779 aa5.98□□□□□ -1.45
PRP40YKL012W TAF3Q12297 353 aa5.98□□□□□ -1.45
PRP40YKL012W SRP54P20424 541 aaKnown RBP5.97□□□□□ -1.45
PRP40YKL012W MRPL9P31334 269 aa5.97□□□□□ -1.45
PRP40YKL012W PDB1P32473 366 aaKnown RBP5.97□□□□□ -1.45
PRP40YKL012W NTR2P36118 322 aaPredicted RBP5.97□□□□□ -1.45
PRP40YKL012W AAP1P37898 856 aaKnown RBP5.97□□□□□ -1.45
PRP40YKL012W REG2P38232 338 aa5.97□□□□□ -1.45
PRP40YKL012W VBA2P38358 474 aaKnown RBP5.97□□□□□ -1.45
PRP40YKL012W YEL057CP39983 233 aa5.97□□□□□ -1.45
PRP40YKL012W YML037CQ03703 340 aa5.97□□□□□ -1.45
PRP40YKL012W GRX6Q12438 231 aa5.97□□□□□ -1.45
PRP40YKL012W YJR112W-AQ3E743 109 aa5.97□□□□□ -1.45
PRP40YKL012W PCT1P13259 424 aa5.96□□□□□ -1.46
PRP40YKL012W ORC2P32833 620 aa5.96□□□□□ -1.46
PRP40YKL012W PHM8P40025 321 aa5.96□□□□□ -1.46
PRP40YKL012W YML6P51998 286 aa5.96□□□□□ -1.46
PRP40YKL012W YGL117WP53133 265 aa5.96□□□□□ -1.46
PRP40YKL012W LCL3P53153 274 aa5.96□□□□□ -1.46
PRP40YKL012W CPR8P53728 308 aa5.96□□□□□ -1.46
PRP40YKL012W WAR1Q03631 944 aa5.96□□□□□ -1.46
PRP40YKL012W PLM2Q04383 521 aa5.96□□□□□ -1.46
PRP40YKL012W HBT1Q07653 1046 aaKnown RBP5.96□□□□□ -1.46
PRP40YKL012W PSR1Q07800 427 aa5.96□□□□□ -1.46
PRP40YKL012W PCL8Q08966 492 aa5.96□□□□□ -1.46
PRP40YKL012W YPT6Q99260 215 aa5.96□□□□□ -1.46
PRP40YKL012W AGP2P38090 596 aa5.95□□□□□ -1.46
PRP40YKL012W CCT6P39079 546 aa5.95□□□□□ -1.46
PRP40YKL012W GIP4P39732 760 aa5.95□□□□□ -1.46
PRP40YKL012W SAP1P39955 897 aaKnown RBP5.95□□□□□ -1.46
PRP40YKL012W MET28P40573 187 aa5.95□□□□□ -1.46
PRP40YKL012W ROK1P45818 564 aaPredicted RBP5.95□□□□□ -1.46
PRP40YKL012W YGR066CP53242 292 aa5.95□□□□□ -1.46
PRP40YKL012W ADE16P54113 591 aaKnown RBP5.95□□□□□ -1.46
PRP40YKL012W SES1P07284 462 aaKnown RBP5.95□□□□□ -1.46
PRP40YKL012W RRP43P25359 394 aaPredicted RBP5.95□□□□□ -1.46
PRP40YKL012W MUM2P38236 366 aa5.95□□□□□ -1.46
PRP40YKL012W SRP72P38688 640 aaKnown RBP5.95□□□□□ -1.46
PRP40YKL012W SEC31P38968 1273 aaKnown RBP5.95□□□□□ -1.46
PRP40YKL012W MET18P40469 1032 aa5.95□□□□□ -1.46
PRP40YKL012W STR3P53101 465 aaKnown RBP5.95□□□□□ -1.46
PRP40YKL012W JJJ1P53863 590 aa5.95□□□□□ -1.46
PRP40YKL012W SMC6Q12749 1114 aa5.95□□□□□ -1.46
PRP40YKL012W DFR1P07807 211 aaKnown RBP RIP-Chip data5.94□□□□□ -1.46not detected
PRP40YKL012W PWP1P21304 576 aaKnown RBP5.94□□□□□ -1.46
PRP40YKL012W YIH1P25637 258 aa5.94□□□□□ -1.46
PRP40YKL012W DBF4P32325 704 aa5.94□□□□□ -1.46
PRP40YKL012W SWI3P32591 825 aa5.94□□□□□ -1.46
PRP40YKL012W SUN4P53616 420 aa5.94□□□□□ -1.46
PRP40YKL012W RSM28Q03430 361 aa5.94□□□□□ -1.46
PRP40YKL012W HRD3Q05787 833 aa5.94□□□□□ -1.46
PRP40YKL012W TPK2P06245 380 aa5.93□□□□□ -1.46
PRP40YKL012W YFL015CP43578 164 aa5.93□□□□□ -1.46
PRP40YKL012W RPN11P43588 306 aaKnown RBP5.93□□□□□ -1.46
PRP40YKL012W YDR131CQ03899 556 aa5.93□□□□□ -1.46
PRP40YKL012W AHA1Q12449 350 aaKnown RBP5.93□□□□□ -1.46
PRP40YKL012W HSP82P02829 709 aaKnown RBP5.93□□□□□ -1.46
PRP40YKL012W ARD1P07347 238 aaPredicted RBP5.93□□□□□ -1.46
PRP40YKL012W UBP11P36026 717 aa5.93□□□□□ -1.46
PRP40YKL012W SMF1P38925 575 aa5.93□□□□□ -1.46
PRP40YKL012W STB4P50104 949 aa5.93□□□□□ -1.46
PRP40YKL012W AAT1Q01802 451 aa5.93□□□□□ -1.46
PRP40YKL012W TIM44Q01852 431 aa5.93□□□□□ -1.46
PRP40YKL012W BUD7Q08754 746 aa5.93□□□□□ -1.46
PRP40YKL012W VMA16P23968 213 aa5.92□□□□□ -1.46
PRP40YKL012W SOF1P33750 489 aaKnown RBP5.92□□□□□ -1.46
PRP40YKL012W MRX1P40050 688 aa5.92□□□□□ -1.46
PRP40YKL012W CTK2P46962 323 aa5.92□□□□□ -1.46
PRP40YKL012W ZDS2P54786 942 aa5.92□□□□□ -1.46
PRP40YKL012W BUD22Q04347 519 aaKnown RBP5.92□□□□□ -1.46
PRP40YKL012W RIM20Q12033 661 aa5.92□□□□□ -1.46
PRP40YKL012W LHS1P36016 881 aa5.91□□□□□ -1.46
PRP40YKL012W BUR6P40096 142 aa5.91□□□□□ -1.46
PRP40YKL012W OPT1P40897 799 aa5.91□□□□□ -1.46
PRP40YKL012W TDA10P42938 290 aa5.91□□□□□ -1.46
PRP40YKL012W ASN1P49089 572 aaKnown RBP5.91□□□□□ -1.46
PRP40YKL012W RCF1Q03713 159 aa5.91□□□□□ -1.46
PRP40YKL012W ARG7Q04728 441 aa5.91□□□□□ -1.46
PRP40YKL012W YOL159C-AQ3E769 90 aa5.91□□□□□ -1.46
PRP40YKL012W SGS1P35187 1447 aa5.91□□□□□ -1.46
PRP40YKL012W HXK2P04807 486 aaKnown RBP5.9□□□□□ -1.46
PRP40YKL012W RPL7AP05737 244 aaKnown RBP5.9□□□□□ -1.46
PRP40YKL012W PMA2P19657 947 aa5.9□□□□□ -1.46
PRP40YKL012W OPI1P21957 404 aa5.9□□□□□ -1.46
PRP40YKL012W YJU2P28320 278 aaPredicted RBP5.9□□□□□ -1.46
PRP40YKL012W DIA4P38705 446 aaPredicted RBP5.9□□□□□ -1.46
PRP40YKL012W LRP1P38801 184 aaKnown RBP5.9□□□□□ -1.46
PRP40YKL012W ASG1P40467 964 aa5.9□□□□□ -1.46
PRP40YKL012W SDS3P40505 327 aa5.9□□□□□ -1.46
PRP40YKL012W SGN1P40561 250 aaKnown RBP RIP-Chip data5.9□□□□□ -1.46not detected
Retrieved 100 of 5,963 RNA–protein pairs in 11.6 ms