RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W UPF3P48412 387 aaKnown RBP3.55□□□□□ -1.84
UPF3YGR072W UBP16Q02863 499 aa3.55□□□□□ -1.84
UPF3YGR072W NUP53Q03790 475 aa3.55□□□□□ -1.84
UPF3YGR072W IMH1Q06704 911 aaKnown RBP3.55□□□□□ -1.84
UPF3YGR072W BAG7Q12128 409 aa3.55□□□□□ -1.84
UPF3YGR072W TAH18Q12181 623 aa3.55□□□□□ -1.84
UPF3YGR072W YBR126W-AQ8TGU7 68 aa3.55□□□□□ -1.84
UPF3YGR072W YMR085WP0CF18 432 aa3.54□□□□□ -1.84
UPF3YGR072W AAD10P47182 288 aa3.54□□□□□ -1.84
UPF3YGR072W YGR079WP53249 370 aa3.54□□□□□ -1.84
UPF3YGR072W DCP2P53550 970 aaKnown RBP3.54□□□□□ -1.84
UPF3YGR072W MUB1Q03162 620 aa3.54□□□□□ -1.84
UPF3YGR072W WAR1Q03631 944 aa3.54□□□□□ -1.84
UPF3YGR072W SPN1Q06505 410 aaPredicted RBP3.54□□□□□ -1.84
UPF3YGR072W YDL242WQ07746 117 aa3.54□□□□□ -1.84
UPF3YGR072W SDH5Q08230 162 aa3.54□□□□□ -1.84
UPF3YGR072W YPL191CQ08930 360 aa3.54□□□□□ -1.84
UPF3YGR072W HER1Q12276 1246 aa3.54□□□□□ -1.84
UPF3YGR072W GCN4P03069 281 aa3.53□□□□□ -1.84
UPF3YGR072W YML003WP0CF16 290 aa3.53□□□□□ -1.84
UPF3YGR072W SRB5P32585 307 aa3.53□□□□□ -1.84
UPF3YGR072W HES1P35843 434 aa3.53□□□□□ -1.84
UPF3YGR072W ALY1P36117 915 aa3.53□□□□□ -1.84
UPF3YGR072W ESL2P36168 1195 aa3.53□□□□□ -1.84
UPF3YGR072W SLZ1P40167 298 aa3.53□□□□□ -1.84
UPF3YGR072W ARF3P40994 183 aaRIP-Chip data3.53□□□□□ -1.84not detected
UPF3YGR072W TDA10P42938 290 aa3.53□□□□□ -1.84
UPF3YGR072W YDR109CQ04585 715 aa3.53□□□□□ -1.84
UPF3YGR072W STP3Q05937 343 aa3.53□□□□□ -1.84
UPF3YGR072W TCO89Q08921 799 aa3.53□□□□□ -1.84
UPF3YGR072W AHA1Q12449 350 aaKnown RBP3.53□□□□□ -1.84
UPF3YGR072W NOP58Q12499 511 aaKnown RBP3.53□□□□□ -1.84
UPF3YGR072W VCX1Q99385 411 aa3.53□□□□□ -1.84
UPF3YGR072W YBR085C-AO43137 85 aa3.52□□□□□ -1.85
UPF3YGR072W COX1P00401 534 aa3.52□□□□□ -1.85
UPF3YGR072W AMD2P22580 549 aa3.52□□□□□ -1.85
UPF3YGR072W SGF29P25554 259 aa3.52□□□□□ -1.85
UPF3YGR072W PGS1P25578 521 aa3.52□□□□□ -1.85
UPF3YGR072W LAC1P28496 418 aa3.52□□□□□ -1.85
UPF3YGR072W RTS1P38903 757 aa3.52□□□□□ -1.85
UPF3YGR072W PSD1P39006 500 aa3.52□□□□□ -1.85
UPF3YGR072W YMR124WP39523 943 aaKnown RBP3.52□□□□□ -1.85
UPF3YGR072W YIL024CP40543 189 aa3.52□□□□□ -1.85
UPF3YGR072W IME4P41833 600 aa3.52□□□□□ -1.85
UPF3YGR072W CIR1P42940 261 aa3.52□□□□□ -1.85
UPF3YGR072W DUO1P53168 247 aaKnown RBP3.52□□□□□ -1.85
UPF3YGR072W MRPL19P53875 158 aa3.52□□□□□ -1.85
UPF3YGR072W RPT6Q01939 405 aaKnown RBP3.52□□□□□ -1.85
UPF3YGR072W YSA1Q01976 231 aa3.52□□□□□ -1.85
UPF3YGR072W GIR2Q03768 265 aaPredicted RBP3.52□□□□□ -1.85
UPF3YGR072W RAD30Q04049 632 aa3.52□□□□□ -1.85
UPF3YGR072W PLM2Q04383 521 aa3.52□□□□□ -1.85
UPF3YGR072W MRPL1Q04599 285 aa3.52□□□□□ -1.85
UPF3YGR072W YML053CQ04978 212 aa3.52□□□□□ -1.85
UPF3YGR072W ARP9Q05123 467 aa3.52□□□□□ -1.85
UPF3YGR072W TPO3Q06451 622 aa3.52□□□□□ -1.85
UPF3YGR072W LCB4Q12246 624 aa3.52□□□□□ -1.85
UPF3YGR072W FOB1O13329 566 aa3.51□□□□□ -1.85
UPF3YGR072W ILV2P07342 687 aaKnown RBP3.51□□□□□ -1.85
UPF3YGR072W RPL19AP0CX82 189 aaKnown RBP3.51□□□□□ -1.85
UPF3YGR072W RPL19BP0CX83 189 aaPredicted RBP3.51□□□□□ -1.85
UPF3YGR072W YER190C-BP0CX94 160 aa3.51□□□□□ -1.85
UPF3YGR072W YEL077W-AP0CX95 160 aa3.51□□□□□ -1.85
UPF3YGR072W YGR296C-BP0CX96 160 aa3.51□□□□□ -1.85
UPF3YGR072W YPL283W-BP0CX97 160 aa3.51□□□□□ -1.85
UPF3YGR072W YPR204C-AP0CX98 160 aa3.51□□□□□ -1.85
UPF3YGR072W RFA2P26754 273 aaKnown RBP3.51□□□□□ -1.85
UPF3YGR072W PEP3P27801 918 aa3.51□□□□□ -1.85
UPF3YGR072W MGM1P32266 881 aa3.51□□□□□ -1.85
UPF3YGR072W GDA1P32621 518 aa3.51□□□□□ -1.85
UPF3YGR072W AGP2P38090 596 aa3.51□□□□□ -1.85
UPF3YGR072W VBA2P38358 474 aaKnown RBP3.51□□□□□ -1.85
UPF3YGR072W UTP9P38882 575 aaKnown RBP3.51□□□□□ -1.85
UPF3YGR072W FLC2P39719 783 aa3.51□□□□□ -1.85
UPF3YGR072W MRX1P40050 688 aa3.51□□□□□ -1.85
UPF3YGR072W SAE2P46946 345 aa3.51□□□□□ -1.85
UPF3YGR072W NPA3P47122 385 aa3.51□□□□□ -1.85
UPF3YGR072W SGM1P47166 707 aa3.51□□□□□ -1.85
UPF3YGR072W YNL092WP53934 400 aa3.51□□□□□ -1.85
UPF3YGR072W YML119WQ03208 357 aa3.51□□□□□ -1.85
UPF3YGR072W YKU80Q04437 629 aa3.51□□□□□ -1.85
UPF3YGR072W YLR287CQ05881 355 aa3.51□□□□□ -1.85
UPF3YGR072W SKG3Q06315 1026 aa3.51□□□□□ -1.85
UPF3YGR072W CRN1Q06440 651 aa3.51□□□□□ -1.85
UPF3YGR072W SWA2Q06677 668 aa3.51□□□□□ -1.85
UPF3YGR072W VIP1Q06685 1146 aaKnown RBP3.51□□□□□ -1.85
UPF3YGR072W ENT4Q07872 247 aa3.51□□□□□ -1.85
UPF3YGR072W PSK2Q08217 1101 aa3.51□□□□□ -1.85
UPF3YGR072W MRN1Q08925 612 aaKnown RBP RIP-Chip data3.51□□□□□ -1.85not detected
UPF3YGR072W PCL8Q08966 492 aa3.51□□□□□ -1.85
UPF3YGR072W RCN2Q12044 265 aa3.51□□□□□ -1.85
UPF3YGR072W OLE1P21147 510 aaKnown RBP3.5□□□□□ -1.85
UPF3YGR072W YCK1P23291 538 aa3.5□□□□□ -1.85
UPF3YGR072W LHS1P36016 881 aa3.5□□□□□ -1.85
UPF3YGR072W GEX2P36173 615 aa3.5□□□□□ -1.85
UPF3YGR072W YBR225WP38321 900 aa3.5□□□□□ -1.85
UPF3YGR072W ERC1P38767 581 aa3.5□□□□□ -1.85
UPF3YGR072W SAP1P39955 897 aaKnown RBP3.5□□□□□ -1.85
UPF3YGR072W PHM8P40025 321 aa3.5□□□□□ -1.85
UPF3YGR072W ASG1P40467 964 aa3.5□□□□□ -1.85
Retrieved 100 of 5,963 RNA–protein pairs in 12.2 ms