RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C ADE17P38009 592 aaKnown RBP2.28□□□□□ -2.04
PCF11YDR228C YPK3P38070 525 aa2.28□□□□□ -2.04
PCF11YDR228C HXT9P40885 567 aa2.28□□□□□ -2.04
PCF11YDR228C ARP10Q04549 284 aa2.28□□□□□ -2.04
PCF11YDR228C UTP21Q06078 939 aaPredicted RBP2.28□□□□□ -2.04
PCF11YDR228C YLR049CQ12110 428 aa2.28□□□□□ -2.04
PCF11YDR228C PET111P08468 800 aa2.28□□□□□ -2.04
PCF11YDR228C TKL1P23254 680 aaKnown RBP2.28□□□□□ -2.04
PCF11YDR228C MGR1P25573 417 aa2.28□□□□□ -2.04
PCF11YDR228C RPN2P32565 945 aaKnown RBP2.28□□□□□ -2.04
PCF11YDR228C YOX1P34161 385 aa2.28□□□□□ -2.04
PCF11YDR228C YBR138CP38277 524 aa2.28□□□□□ -2.04
PCF11YDR228C RSF1Q05043 376 aa2.28□□□□□ -2.04
PCF11YDR228C STP3Q05937 343 aa2.28□□□□□ -2.04
PCF11YDR228C SWA2Q06677 668 aa2.28□□□□□ -2.04
PCF11YDR228C SWT1Q12104 458 aa2.28□□□□□ -2.04
PCF11YDR228C BAR1P12630 587 aa2.27□□□□□ -2.05
PCF11YDR228C CLB2P24869 491 aa2.27□□□□□ -2.05
PCF11YDR228C YKL133CP36066 463 aa2.27□□□□□ -2.05
PCF11YDR228C AAP1P37898 856 aaKnown RBP2.27□□□□□ -2.05
PCF11YDR228C CTK2P46962 323 aa2.27□□□□□ -2.05
PCF11YDR228C MET14Q02196 202 aa2.27□□□□□ -2.05
PCF11YDR228C SMA1Q02651 245 aa2.27□□□□□ -2.05
PCF11YDR228C MLC2Q06580 163 aa2.27□□□□□ -2.05
PCF11YDR228C TMA7Q3E764 64 aaKnown RBP2.27□□□□□ -2.05
PCF11YDR228C GAL1P04385 528 aa2.26□□□□□ -2.05
PCF11YDR228C PMS1P14242 873 aa2.26□□□□□ -2.05
PCF11YDR228C PUG1P40100 303 aa2.26□□□□□ -2.05
PCF11YDR228C IAH1P41734 238 aa2.26□□□□□ -2.05
PCF11YDR228C ERR3P42222 437 aa2.26□□□□□ -2.05
PCF11YDR228C ZAP1P47043 880 aa2.26□□□□□ -2.05
PCF11YDR228C IMP4P53941 290 aaKnown RBP2.26□□□□□ -2.05
PCF11YDR228C TRS130Q03660 1102 aa2.26□□□□□ -2.05
PCF11YDR228C EKI1Q03764 534 aa2.26□□□□□ -2.05
PCF11YDR228C YLR352WQ06479 807 aa2.26□□□□□ -2.05
PCF11YDR228C MCP2Q06567 569 aa2.26□□□□□ -2.05
PCF11YDR228C SAC1P32368 623 aaKnown RBP2.26□□□□□ -2.05
PCF11YDR228C GCD7P32502 381 aaPredicted RBP2.26□□□□□ -2.05
PCF11YDR228C PDR3P33200 976 aa2.26□□□□□ -2.05
PCF11YDR228C HIS6P40545 261 aa2.26□□□□□ -2.05
PCF11YDR228C YIR014WP40570 242 aa2.26□□□□□ -2.05
PCF11YDR228C FET5P43561 622 aa2.26□□□□□ -2.05
PCF11YDR228C CSL4P53859 292 aaPredicted RBP2.26□□□□□ -2.05
PCF11YDR228C CRZ1P53968 678 aa2.26□□□□□ -2.05
PCF11YDR228C CTL1Q03220 320 aaKnown RBP2.26□□□□□ -2.05
PCF11YDR228C YBR298C-AQ8TGK4 73 aa2.26□□□□□ -2.05
PCF11YDR228C YML002WP0CF17 737 aa2.25□□□□□ -2.05
PCF11YDR228C GUK1P15454 187 aaKnown RBP2.25□□□□□ -2.05
PCF11YDR228C SPO16P17122 198 aa2.25□□□□□ -2.05
PCF11YDR228C NTR2P36118 322 aaPredicted RBP2.25□□□□□ -2.05
PCF11YDR228C RIM2P38127 377 aa2.25□□□□□ -2.05
PCF11YDR228C SDS24P38314 527 aa2.25□□□□□ -2.05
PCF11YDR228C SEC31P38968 1273 aaKnown RBP2.25□□□□□ -2.05
PCF11YDR228C RTS2P40962 232 aa2.25□□□□□ -2.05
PCF11YDR228C SWP82P43554 623 aa2.25□□□□□ -2.05
PCF11YDR228C PFA5Q03289 374 aa2.25□□□□□ -2.05
PCF11YDR228C BSC1Q12140 328 aa2.25□□□□□ -2.05
PCF11YDR228C RRP6Q12149 733 aaKnown RBP2.25□□□□□ -2.05
PCF11YDR228C PGI1P12709 554 aaKnown RBP2.24□□□□□ -2.05
PCF11YDR228C LHS1P36016 881 aa2.24□□□□□ -2.05
PCF11YDR228C DHH1P39517 506 aaKnown RBP2.24□□□□□ -2.05
PCF11YDR228C MRX1P40050 688 aa2.24□□□□□ -2.05
PCF11YDR228C SGF73P53165 657 aa2.24□□□□□ -2.05
PCF11YDR228C CRN1Q06440 651 aa2.24□□□□□ -2.05
PCF11YDR228C DAP1Q12091 152 aa2.24□□□□□ -2.05
PCF11YDR228C KRS1P15180 591 aaKnown RBP2.24□□□□□ -2.05
PCF11YDR228C NCP1P16603 691 aaKnown RBP2.24□□□□□ -2.05
PCF11YDR228C CLB4P24871 460 aa2.24□□□□□ -2.05
PCF11YDR228C GID7P25569 745 aa2.24□□□□□ -2.05
PCF11YDR228C MSH1P25846 959 aa2.24□□□□□ -2.05
PCF11YDR228C PTP2P29461 750 aa2.24□□□□□ -2.05
PCF11YDR228C ARP1P38696 384 aa2.24□□□□□ -2.05
PCF11YDR228C RGI2P40188 164 aa2.24□□□□□ -2.05
PCF11YDR228C YIL161WP40449 235 aaKnown RBP2.24□□□□□ -2.05
PCF11YDR228C YTP1P53584 459 aa2.24□□□□□ -2.05
PCF11YDR228C YMR178WQ03219 274 aaKnown RBP2.24□□□□□ -2.05
PCF11YDR228C TLG2Q08144 397 aa2.24□□□□□ -2.05
PCF11YDR228C RAP1P11938 827 aa2.23□□□□□ -2.05
PCF11YDR228C GAC1P28006 793 aa2.23□□□□□ -2.05
PCF11YDR228C LOS1P33418 1100 aaPredicted RBP2.23□□□□□ -2.05
PCF11YDR228C NPR3P38742 1146 aa2.23□□□□□ -2.05
PCF11YDR228C KRE9P39005 276 aa2.23□□□□□ -2.05
PCF11YDR228C PHO90P39535 881 aa2.23□□□□□ -2.05
PCF11YDR228C ECM10P39987 644 aa2.23□□□□□ -2.05
PCF11YDR228C GUF1P46943 645 aa2.23□□□□□ -2.05
PCF11YDR228C YNL234WP53857 426 aa2.23□□□□□ -2.05
PCF11YDR228C RSM28Q03430 361 aa2.23□□□□□ -2.05
PCF11YDR228C HIM1Q06674 414 aa2.23□□□□□ -2.05
PCF11YDR228C TIP41Q12199 356 aa2.23□□□□□ -2.05
PCF11YDR228C EDE1P34216 1381 aa2.23□□□□□ -2.05
PCF11YDR228C ATP2P00830 511 aaKnown RBP2.22□□□□□ -2.05
PCF11YDR228C PRP16P15938 1071 aaPredicted RBP2.22□□□□□ -2.05
PCF11YDR228C GLN3P18494 730 aa2.22□□□□□ -2.05
PCF11YDR228C SOF1P33750 489 aaKnown RBP2.22□□□□□ -2.05
PCF11YDR228C YBR139WP38109 508 aa2.22□□□□□ -2.05
PCF11YDR228C YHL041WP38730 149 aa2.22□□□□□ -2.05
PCF11YDR228C RPT2P40327 437 aaKnown RBP2.22□□□□□ -2.05
PCF11YDR228C NUP100Q02629 959 aa2.22□□□□□ -2.05
PCF11YDR228C ATP4P05626 244 aa2.22□□□□□ -2.05
PCF11YDR228C MRS3P10566 314 aa2.22□□□□□ -2.05
Retrieved 100 of 5,963 RNA–protein pairs in 27.7 ms