RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 HADHQ16836 314 aaKnown RBP6.76□□□□□ -1.33
SCN1A-217ENST00000637988 CC2D2BQ6DHV5 1058 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 BRF1Q92994 677 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 FAM89AQ96GI7 184 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 ABCB5Q2M3G0 1257 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 PPP4R1Q8TF05 950 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 ATF5Q9Y2D1 282 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-217ENST00000637988 NONOQ15233 471 aaKnown RBP eCLIP6.76□□□□□ -1.33
SCN1A-217ENST00000637988 ZNF790Q6PG37 636 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 SYCE1Q8N0S2 351 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 MRPS27Q92552 414 aaKnown RBP6.76□□□□□ -1.33
SCN1A-217ENST00000637988 BICC1Q9H694 974 aaKnown RBP6.76□□□□□ -1.33
SCN1A-217ENST00000637988 SLC13A4Q9UKG4 626 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 ANGPTL3Q9Y5C1 460 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 ADGRF5Q8IZF2 1346 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 KBTBD13C9JR72 458 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 EIF3DO15371 548 aaKnown RBP eCLIP6.76□□□□□ -1.333e-6■■□□□ 11.9
SCN1A-217ENST00000637988 TFCP2Q12800 502 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 MYO1EQ12965 1108 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 REXO1Q8N1G1 1221 aaKnown RBP6.76□□□□□ -1.33
SCN1A-217ENST00000637988 RNF139Q8WU17 664 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 APOL6Q9BWW8 343 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 TEKT3Q9BXF9 490 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 PARD3Q8TEW0 1356 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 DENND3A2RUS2 1198 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 ANXA1P04083 346 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 MYL3P08590 195 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 ACRBPQ8NEB7 543 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 GRPEL1Q9HAV7 217 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 BCAP29Q9UHQ4 241 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 PCDHA1Q9Y5I3 950 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 SEPT14Q6ZU15 432 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 STMN2Q93045 179 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 CTAGE15A4D2H0 777 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 CTAGE8P0CG41 777 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 ATXN8OSP0DMR3 200 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 IRX5P78411 483 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 CTAGE6Q86UF2 777 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 KIAA0825Q8IV33 1275 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 CTAGE4Q8IX94 777 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 C10orf67Q8IYJ2 551 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 TTLL6Q8N841 843 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 TTC25Q96NG3 672 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 RABGAP1Q9Y3P9 1069 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 SPTLC2O15270 562 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 PYGLP06737 847 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 RPS8P62241 208 aaKnown RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 RAB44Q7Z6P3 723 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 GIMAP8Q8ND71 665 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 NOC4LQ9BVI4 516 aaKnown RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 NUP58Q9BVL2 599 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 TFIP11Q9UBB9 837 aaKnown RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 ZFYVE16Q7Z3T8 1539 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 GNG11P61952 73 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 MKRN3Q13064 507 aaKnown RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 IQCB1Q15051 598 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 CCDC122Q5T0U0 273 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 NME8Q8N427 588 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 GPBP1L1Q9HC44 474 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 RBM8AQ9Y5S9 174 aaKnown RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 FAM95CA0A1B0GW59 222 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 LRRIQ4A6NIV6 560 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 MAN1A1P33908 653 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 PIK3CAP42336 1068 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 ZNF165P49910 485 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 APOBRQ0VD83 1088 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 RBBP5Q15291 538 aaKnown RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 XKR9Q5GH70 373 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 APOBEC3FQ8IUX4 373 aaKnown RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 MAPKAPK5Q8IW41 473 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 TTC30BQ8N4P2 665 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 SEPT9Q9UHD8 586 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 ZHX1Q9UKY1 873 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 USTQ9Y2C2 406 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 PPFIA4O75335 1185 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 ARPP19P56211 112 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 SPATA5Q8NB90 893 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 ATP6V0A1Q93050 837 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 PKNOX2Q96KN3 472 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 METTL22Q9BUU2 404 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 DYRK4Q9NR20 520 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 C1orf112Q9NSG2 853 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 ATP8A2Q9NTI2 1148 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 KDM5CP41229 1560 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 GOLGA8QA0A0J9YX86 632 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 GOLGA8OA6NCC3 632 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 NBPF26B4DH59 902 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 GOLGA8NF8WBI6 632 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 NEMP1O14524 444 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 TRIM14Q14142 442 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 HERC4Q5GLZ8 1057 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 ATL3Q6DD88 541 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 ZNF467Q7Z7K2 595 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 SYNDIG1Q9H7V2 258 aa6.75□□□□□ -1.33
SCN1A-217ENST00000637988 LUC7L2Q9Y383 392 aaKnown RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 THOC2Q8NI27 1593 aaKnown RBP6.75□□□□□ -1.33
SCN1A-217ENST00000637988 XDHP47989 1333 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 PHBP35232 272 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 ICA1Q05084 483 aa6.74□□□□□ -1.33
SCN1A-217ENST00000637988 VCX3BQ9H321 246 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms