RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 TTC38Q5R3I4 469 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 TMTC3Q6ZXV5 915 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 SH3RF3Q8TEJ3 882 aaPredicted RBP9.98□□□□□ -0.81
LINC00558-201ENST00000569422 PHF20Q9BVI0 1012 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 KAT14Q9H8E8 782 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 ANAPC4Q9UJX5 808 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 MYH3P11055 1940 aa9.97□□□□□ -0.81
LINC00558-201ENST00000569422 COL16A1Q07092 1604 aaPredicted RBP9.97□□□□□ -0.81
LINC00558-201ENST00000569422 PRPF3O43395 683 aaKnown RBP9.97□□□□□ -0.81
LINC00558-201ENST00000569422 CBFA2T2O43439 604 aa9.97□□□□□ -0.81
LINC00558-201ENST00000569422 LDHBP07195 334 aaKnown RBP9.97□□□□□ -0.81
LINC00558-201ENST00000569422 FAM196AQ6ZSG2 479 aa9.97□□□□□ -0.81
LINC00558-201ENST00000569422 MTERF4Q7Z6M4 381 aaKnown RBP9.97□□□□□ -0.81
LINC00558-201ENST00000569422 DNAI1Q9UI46 699 aa9.97□□□□□ -0.81
LINC00558-201ENST00000569422 MYH7P12883 1935 aa9.97□□□□□ -0.81
LINC00558-201ENST00000569422 FUT2Q10981 343 aa9.97□□□□□ -0.81
LINC00558-201ENST00000569422 SPTY2D1Q68D10 685 aaPredicted RBP9.97□□□□□ -0.81
LINC00558-201ENST00000569422 ANKRD2Q9GZV1 360 aa9.97□□□□□ -0.81
LINC00558-201ENST00000569422 VAT1LQ9HCJ6 419 aa9.97□□□□□ -0.81
LINC00558-201ENST00000569422 USP21Q9UK80 565 aa9.97□□□□□ -0.81
LINC00558-201ENST00000569422 ACTN4O43707 911 aaKnown RBP9.96□□□□□ -0.81
LINC00558-201ENST00000569422 TOM1O60784 492 aa9.96□□□□□ -0.81
LINC00558-201ENST00000569422 NYAP1Q6ZVC0 841 aa9.96□□□□□ -0.81
LINC00558-201ENST00000569422 RBM28Q9NW13 759 aaKnown RBP9.96□□□□□ -0.81
LINC00558-201ENST00000569422 C4AP0C0L4 1744 aa9.96□□□□□ -0.81
LINC00558-201ENST00000569422 C4BP0C0L5 1744 aa9.96□□□□□ -0.81
LINC00558-201ENST00000569422 TRAPPC3LQ5T215 181 aa9.96□□□□□ -0.82
LINC00558-201ENST00000569422 EGFL6Q8IUX8 553 aa9.96□□□□□ -0.82
LINC00558-201ENST00000569422 CCDC94Q9BW85 323 aaPredicted RBP9.96□□□□□ -0.82
LINC00558-201ENST00000569422 INTS13Q9NVM9 706 aa9.96□□□□□ -0.82
LINC00558-201ENST00000569422 CTIFO43310 598 aaKnown RBP9.96□□□□□ -0.82
LINC00558-201ENST00000569422 TSPY3P0CV98 308 aa9.96□□□□□ -0.82
LINC00558-201ENST00000569422 TSPY8P0CW00 308 aa9.96□□□□□ -0.82
LINC00558-201ENST00000569422 SCG2P13521 617 aa9.96□□□□□ -0.82
LINC00558-201ENST00000569422 PLCD1P51178 756 aa9.96□□□□□ -0.82
LINC00558-201ENST00000569422 SLC10A5Q5PT55 438 aa9.96□□□□□ -0.82
LINC00558-201ENST00000569422 HEATR3Q7Z4Q2 680 aa9.96□□□□□ -0.82
LINC00558-201ENST00000569422 VSTM4Q8IW00 320 aa9.96□□□□□ -0.82
LINC00558-201ENST00000569422 PNMA1Q8ND90 353 aa9.96□□□□□ -0.82
LINC00558-201ENST00000569422 MED15Q96RN5 788 aa9.96□□□□□ -0.82
LINC00558-201ENST00000569422 DESI2Q9BSY9 194 aa9.96□□□□□ -0.82
LINC00558-201ENST00000569422 CNTNAP5Q8WYK1 1306 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 EP400Q96L91 3159 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 FAM237AA0A1B0GTK4 181 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 F8W031 263 aaPredicted RBP9.95□□□□□ -0.82
LINC00558-201ENST00000569422 CALM1P0DP23 149 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 CALM2P0DP24 149 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 CALM3P0DP25 149 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 CD44P16070 742 aaKnown RBP9.95□□□□□ -0.82
LINC00558-201ENST00000569422 TM4SF1P30408 202 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 ELF2Q15723 593 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 NBPF20Q3BBV1 942 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 ZNF444Q8N0Y2 327 aaPredicted RBP9.95□□□□□ -0.82
LINC00558-201ENST00000569422 CNBD1Q8NA66 436 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 LRRN4CLQ8ND94 238 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 EEF2KMTQ96G04 330 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 PAGE5Q96GU1 130 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 ATP8A2Q9NTI2 1148 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 ANKRD36CQ5JPF3 1778 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 BCL9LQ86UU0 1499 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 PES1O00541 588 aaKnown RBP9.95□□□□□ -0.82
LINC00558-201ENST00000569422 TEX33O43247 280 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 CCT6AP40227 531 aaKnown RBP9.95□□□□□ -0.82
LINC00558-201ENST00000569422 MORC3Q14149 939 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 TMCO4Q5TGY1 634 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 MLKLQ8NB16 471 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 NOL10Q9BSC4 688 aaKnown RBP9.95□□□□□ -0.82
LINC00558-201ENST00000569422 IL17RBQ9NRM6 502 aa9.95□□□□□ -0.82
LINC00558-201ENST00000569422 ARPP21Q9UBL0 812 aaPredicted RBP9.95□□□□□ -0.82
LINC00558-201ENST00000569422 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.95□□□□□ -0.82
LINC00558-201ENST00000569422 TTC36A6NLP5 189 aa9.94□□□□□ -0.82
LINC00558-201ENST00000569422 PP2D1A8MPX8 630 aa9.94□□□□□ -0.82
LINC00558-201ENST00000569422 DDAH1O94760 285 aa9.94□□□□□ -0.82
LINC00558-201ENST00000569422 URI1O94763 535 aaPredicted RBP9.94□□□□□ -0.82
LINC00558-201ENST00000569422 UFL1O94874 794 aa9.94□□□□□ -0.82
LINC00558-201ENST00000569422 DHX8Q14562 1220 aaKnown RBP9.94□□□□□ -0.82
LINC00558-201ENST00000569422 NPY5RQ15761 445 aa9.94□□□□□ -0.82
LINC00558-201ENST00000569422 RCSD1Q6JBY9 416 aa9.94□□□□□ -0.82
LINC00558-201ENST00000569422 RPGRQ92834 1020 aaKnown RBP9.94□□□□□ -0.82
LINC00558-201ENST00000569422 CCDC34Q96HJ3 373 aa9.94□□□□□ -0.82
LINC00558-201ENST00000569422 DACH1Q9UI36 760 aa9.94□□□□□ -0.82
LINC00558-201ENST00000569422 CTNND2Q9UQB3 1225 aa9.94□□□□□ -0.82
LINC00558-201ENST00000569422 CNTNAP4Q9C0A0 1308 aa9.94□□□□□ -0.82
LINC00558-201ENST00000569422 LRP5O75197 1615 aa9.94□□□□□ -0.82
LINC00558-201ENST00000569422 EIF6P56537 245 aaKnown RBP9.93□□□□□ -0.82
LINC00558-201ENST00000569422 KARSQ15046 597 aaKnown RBP9.93□□□□□ -0.82
LINC00558-201ENST00000569422 PPP2R5BQ15173 497 aa9.93□□□□□ -0.82
LINC00558-201ENST00000569422 MEX3CQ5U5Q3 659 aaKnown RBP9.93□□□□□ -0.82
LINC00558-201ENST00000569422 RRAGBQ5VZM2 374 aa9.93□□□□□ -0.82
LINC00558-201ENST00000569422 KANK3Q6NY19 840 aa9.93□□□□□ -0.82
LINC00558-201ENST00000569422 AMOTL1Q8IY63 956 aa9.93□□□□□ -0.82
LINC00558-201ENST00000569422 BAG1Q99933 345 aaPredicted RBP9.93□□□□□ -0.82
LINC00558-201ENST00000569422 MTA3Q9BTC8 594 aa9.93□□□□□ -0.82
LINC00558-201ENST00000569422 CICQ96RK0 1608 aaPredicted RBP9.93□□□□□ -0.82
LINC00558-201ENST00000569422 MYH15Q9Y2K3 1946 aa9.93□□□□□ -0.82
LINC00558-201ENST00000569422 FAM205AQ6ZU69 1335 aa9.93□□□□□ -0.82
LINC00558-201ENST00000569422 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.93□□□□□ -0.82
LINC00558-201ENST00000569422 VGLL3A8MV65 326 aa9.93□□□□□ -0.82
LINC00558-201ENST00000569422 C6orf229H3BNL8 230 aa9.93□□□□□ -0.82
LINC00558-201ENST00000569422 RIMBP2O15034 1052 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms