RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 KANSL2Q9H9L4 492 aa22■■□□□ 1.11
CLN3-233ENST00000568452 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22■■□□□ 1.11
CLN3-233ENST00000568452 MAD2L2Q9UI95 211 aa22■■□□□ 1.11
CLN3-233ENST00000568452 V9GY48 417 aaPredicted RBP22■■□□□ 1.11
CLN3-233ENST00000568452 SHTN1A0MZ66 631 aa21.99■■□□□ 1.11
CLN3-233ENST00000568452 PALM3A6NDB9 673 aaPredicted RBP21.99■■□□□ 1.11
CLN3-233ENST00000568452 FAM196BA6NMK8 535 aa21.99■■□□□ 1.11
CLN3-233ENST00000568452 FIBPO43427 364 aa21.99■■□□□ 1.11
CLN3-233ENST00000568452 PARP1P09874 1014 aaKnown RBP21.99■■□□□ 1.11
CLN3-233ENST00000568452 GUCY1A2P33402 732 aa21.99■■□□□ 1.11
CLN3-233ENST00000568452 KIF23Q02241 960 aaPredicted RBP21.99■■□□□ 1.11
CLN3-233ENST00000568452 RBM26Q5T8P6 1007 aaKnown RBP21.99■■□□□ 1.11
CLN3-233ENST00000568452 FAM173BQ6P4H8 233 aa21.99■■□□□ 1.11
CLN3-233ENST00000568452 GDPD2Q9HCC8 539 aa21.99■■□□□ 1.11
CLN3-233ENST00000568452 CABP5Q9NP86 173 aa21.99■■□□□ 1.11
CLN3-233ENST00000568452 CLIP2Q9UDT6 1046 aa21.99■■□□□ 1.11
CLN3-233ENST00000568452 TBC1D12O60347 775 aa21.98■■□□□ 1.11
CLN3-233ENST00000568452 SMARCA1P28370 1054 aa21.98■■□□□ 1.11
CLN3-233ENST00000568452 ABCB5Q2M3G0 1257 aa21.98■■□□□ 1.11
CLN3-233ENST00000568452 NYAP2Q9P242 653 aa21.98■■□□□ 1.11
CLN3-233ENST00000568452 ELP1O95163 1332 aa21.98■■□□□ 1.11
CLN3-233ENST00000568452 GNL2Q13823 731 aaKnown RBP21.98■■□□□ 1.11
CLN3-233ENST00000568452 PKN1Q16512 942 aa21.98■■□□□ 1.11
CLN3-233ENST00000568452 KIF4BQ2VIQ3 1234 aa21.98■■□□□ 1.11
CLN3-233ENST00000568452 GJB4Q9NTQ9 266 aa21.98■■□□□ 1.11
CLN3-233ENST00000568452 MMP1P03956 469 aa21.97■■□□□ 1.11
CLN3-233ENST00000568452 ASPRV1Q53RT3 343 aa21.97■■□□□ 1.11
CLN3-233ENST00000568452 STAG2Q8N3U4 1231 aa21.97■■□□□ 1.11
CLN3-233ENST00000568452 TCHHQ07283 1943 aa21.97■■□□□ 1.11
CLN3-233ENST00000568452 MYH6P13533 1939 aa21.96■■□□□ 1.11
CLN3-233ENST00000568452 KLRF2D3W0D1 207 aa21.96■■□□□ 1.11
CLN3-233ENST00000568452 UBE2Q2LH0YL09 131 aa21.96■■□□□ 1.11
CLN3-233ENST00000568452 SLURP2P0DP57 97 aa21.96■■□□□ 1.11
CLN3-233ENST00000568452 TBC1D10BQ4KMP7 808 aaPredicted RBP21.96■■□□□ 1.11
CLN3-233ENST00000568452 SAMD7Q7Z3H4 446 aa21.96■■□□□ 1.11
CLN3-233ENST00000568452 MKL1Q969V6 931 aa21.96■■□□□ 1.11
CLN3-233ENST00000568452 SPATA32Q96LK8 384 aa21.96■■□□□ 1.11
CLN3-233ENST00000568452 SPZ1Q9BXG8 430 aa21.96■■□□□ 1.11
CLN3-233ENST00000568452 TMEM39BQ9GZU3 492 aa21.96■■□□□ 1.11
CLN3-233ENST00000568452 MTMR7Q9Y216 660 aa21.96■■□□□ 1.11
CLN3-233ENST00000568452 SBF1O95248 1867 aa21.96■■□□□ 1.11
CLN3-233ENST00000568452 SNHG28P0DPA3 235 aa21.95■■□□□ 1.1
CLN3-233ENST00000568452 PDHBP11177 359 aa21.95■■□□□ 1.1
CLN3-233ENST00000568452 SCG2P13521 617 aa21.95■■□□□ 1.1
CLN3-233ENST00000568452 UBE2HP62256 183 aa21.95■■□□□ 1.1
CLN3-233ENST00000568452 PFKFB3Q16875 520 aaPredicted RBP21.95■■□□□ 1.1
CLN3-233ENST00000568452 LRRC47Q8N1G4 583 aaKnown RBP21.95■■□□□ 1.1
CLN3-233ENST00000568452 GPRC5DQ9NZD1 345 aa21.95■■□□□ 1.1
CLN3-233ENST00000568452 TFIP11Q9UBB9 837 aaKnown RBP21.95■■□□□ 1.1
CLN3-233ENST00000568452 U2AF2P26368 475 aaKnown RBP eCLIP21.95■■□□□ 1.1
CLN3-233ENST00000568452 ATP2B2Q01814 1243 aa21.95■■□□□ 1.1
CLN3-233ENST00000568452 ICA1Q05084 483 aa21.95■■□□□ 1.1
CLN3-233ENST00000568452 RASA3Q14644 834 aa21.95■■□□□ 1.1
CLN3-233ENST00000568452 FOXP1Q9H334 677 aaPredicted RBP21.95■■□□□ 1.1
CLN3-233ENST00000568452 RNF181Q9P0P0 153 aa21.95■■□□□ 1.1
CLN3-233ENST00000568452 PGAP2Q9UHJ9 254 aa21.95■■□□□ 1.1
CLN3-233ENST00000568452 GDF11O95390 407 aa21.94■■□□□ 1.1
CLN3-233ENST00000568452 EGFRP00533 1210 aa21.94■■□□□ 1.1
CLN3-233ENST00000568452 MAP3K10Q02779 954 aa21.94■■□□□ 1.1
CLN3-233ENST00000568452 SEPT2Q15019 361 aa21.94■■□□□ 1.1
CLN3-233ENST00000568452 MYSM1Q5VVJ2 828 aa21.94■■□□□ 1.1
CLN3-233ENST00000568452 USP17L2Q6R6M4 530 aa21.94■■□□□ 1.1
CLN3-233ENST00000568452 CLEC10AQ8IUN9 316 aa21.94■■□□□ 1.1
CLN3-233ENST00000568452 FAM177A1Q8N128 213 aaPredicted RBP21.94■■□□□ 1.1
CLN3-233ENST00000568452 LEO1Q8WVC0 666 aaPredicted RBP21.94■■□□□ 1.1
CLN3-233ENST00000568452 BRMS1Q9HCU9 246 aa21.94■■□□□ 1.1
CLN3-233ENST00000568452 SYNPO2Q9UMS6 1093 aa21.94■■□□□ 1.1
CLN3-233ENST00000568452 MYH15Q9Y2K3 1946 aa21.94■■□□□ 1.1
CLN3-233ENST00000568452 USP17L5A8MUK1 530 aa21.93■■□□□ 1.1
CLN3-233ENST00000568452 KIF28PB7ZC32 967 aa21.93■■□□□ 1.1
CLN3-233ENST00000568452 EEF2P13639 858 aaKnown RBP21.93■■□□□ 1.1
CLN3-233ENST00000568452 GPATCH4Q5T3I0 446 aaKnown RBP21.93■■□□□ 1.1
CLN3-233ENST00000568452 DIS3L2Q8IYB7 885 aaKnown RBP21.93■■□□□ 1.1
CLN3-233ENST00000568452 SH3GLB2Q9NR46 395 aa21.93■■□□□ 1.1
CLN3-233ENST00000568452 HACL1Q9UJ83 578 aa21.93■■□□□ 1.1
CLN3-233ENST00000568452 hCG_1642624A0A1W2PR95 340 aa21.92■■□□□ 1.1
CLN3-233ENST00000568452 GH2P01242 217 aa21.92■■□□□ 1.1
CLN3-233ENST00000568452 GOLGA8HP0CJ92 632 aa21.92■■□□□ 1.1
CLN3-233ENST00000568452 APOBEC3FQ8IUX4 373 aaKnown RBP21.92■■□□□ 1.1
CLN3-233ENST00000568452 GPT2Q8TD30 523 aa21.92■■□□□ 1.1
CLN3-233ENST00000568452 PHF20Q9BVI0 1012 aa21.92■■□□□ 1.1
CLN3-233ENST00000568452 VPS54Q9P1Q0 977 aa21.92■■□□□ 1.1
CLN3-233ENST00000568452 KCNJ14Q9UNX9 436 aa21.92■■□□□ 1.1
CLN3-233ENST00000568452 GADD45BO75293 160 aaPredicted RBP21.91■■□□□ 1.1
CLN3-233ENST00000568452 ZNF543Q08ER8 600 aa21.91■■□□□ 1.1
CLN3-233ENST00000568452 DCAF4Q8WV16 495 aa21.91■■□□□ 1.1
CLN3-233ENST00000568452 USP28Q96RU2 1077 aa21.91■■□□□ 1.1
CLN3-233ENST00000568452 RTEL1Q9NZ71 1219 aa21.91■■□□□ 1.1
CLN3-233ENST00000568452 RCOR1Q9UKL0 485 aa21.91■■□□□ 1.1
CLN3-233ENST00000568452 NOSTRINQ8IVI9 506 aa21.91■■□□□ 1.1
CLN3-233ENST00000568452 RRP36Q96EU6 259 aaKnown RBP21.91■■□□□ 1.1
CLN3-233ENST00000568452 MYH4Q9Y623 1939 aa21.9■■□□□ 1.1
CLN3-233ENST00000568452 GOLGA6L4A6NEF3 574 aa21.9■■□□□ 1.1
CLN3-233ENST00000568452 CYTH3O43739 400 aa21.9■■□□□ 1.1
CLN3-233ENST00000568452 CALML3P27482 149 aa21.9■■□□□ 1.1
CLN3-233ENST00000568452 KRT2P35908 639 aa21.9■■□□□ 1.1
CLN3-233ENST00000568452 HOOK2Q96ED9 719 aa21.9■■□□□ 1.1
CLN3-233ENST00000568452 POLR3EQ9NVU0 708 aa21.9■■□□□ 1.1
CLN3-233ENST00000568452 SEC63Q9UGP8 760 aaKnown RBP21.9■■□□□ 1.1
CLN3-233ENST00000568452 BTBD18B2RXH4 712 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms