RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 ZBTB47Q9UFB7 747 aaPredicted RBP16.85■□□□□ 0.29
SMPD3-204ENST00000563396 PEX10O60683 326 aa16.84■□□□□ 0.29
SMPD3-204ENST00000563396 GJA8P48165 433 aa16.84■□□□□ 0.29
SMPD3-204ENST00000563396 KIAA1755Q5JYT7 1200 aa16.84■□□□□ 0.29
SMPD3-204ENST00000563396 NKX2-3Q8TAU0 364 aa16.84■□□□□ 0.29
SMPD3-204ENST00000563396 SEC62Q99442 399 aaKnown RBP16.84■□□□□ 0.29
SMPD3-204ENST00000563396 PAGR1Q9BTK6 254 aa16.84■□□□□ 0.29
SMPD3-204ENST00000563396 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.84■□□□□ 0.29
SMPD3-204ENST00000563396 PORCNQ9H237 461 aa16.84■□□□□ 0.29
SMPD3-204ENST00000563396 FOXP2O15409 715 aa16.83■□□□□ 0.28
SMPD3-204ENST00000563396 MYCP01106 439 aaPredicted RBP16.83■□□□□ 0.28
SMPD3-204ENST00000563396 HMGCRP04035 888 aa16.83■□□□□ 0.28
SMPD3-204ENST00000563396 RASA1P20936 1047 aa16.83■□□□□ 0.28
SMPD3-204ENST00000563396 Q3C1V9 767 aa16.83■□□□□ 0.28
SMPD3-204ENST00000563396 GPR142Q7Z601 462 aa16.83■□□□□ 0.28
SMPD3-204ENST00000563396 UBE2Q1Q7Z7E8 422 aa16.83■□□□□ 0.28
SMPD3-204ENST00000563396 EXOC6Q8TAG9 804 aa16.83■□□□□ 0.28
SMPD3-204ENST00000563396 USP6NLQ92738 828 aa16.83■□□□□ 0.28
SMPD3-204ENST00000563396 EVI5LQ96CN4 794 aa16.83■□□□□ 0.28
SMPD3-204ENST00000563396 KANSL2Q9H9L4 492 aa16.83■□□□□ 0.28
SMPD3-204ENST00000563396 PAK6Q9NQU5 681 aaPredicted RBP16.83■□□□□ 0.28
SMPD3-204ENST00000563396 PATL2C9JE40 543 aaKnown RBP16.82■□□□□ 0.28
SMPD3-204ENST00000563396 WDR46O15213 610 aaKnown RBP16.82■□□□□ 0.28
SMPD3-204ENST00000563396 XRCC5P13010 732 aaKnown RBP16.82■□□□□ 0.28
SMPD3-204ENST00000563396 CAPN2P17655 700 aa16.82■□□□□ 0.28
SMPD3-204ENST00000563396 TDO2P48775 406 aa16.82■□□□□ 0.28
SMPD3-204ENST00000563396 MORN1Q5T089 497 aa16.82■□□□□ 0.28
SMPD3-204ENST00000563396 IFNL3Q8IZI9 196 aa16.82■□□□□ 0.28
SMPD3-204ENST00000563396 UNC93B1Q9H1C4 597 aa16.82■□□□□ 0.28
SMPD3-204ENST00000563396 RWDD1Q9H446 243 aaPredicted RBP16.82■□□□□ 0.28
SMPD3-204ENST00000563396 BTBD7Q9P203 1132 aa16.82■□□□□ 0.28
SMPD3-204ENST00000563396 IGKV6D-41A0A0C4DH26 115 aa16.81■□□□□ 0.28
SMPD3-204ENST00000563396 EEF2P13639 858 aaKnown RBP16.81■□□□□ 0.28
SMPD3-204ENST00000563396 CCNA1P78396 465 aa16.81■□□□□ 0.28
SMPD3-204ENST00000563396 U2AF1L4Q8WU68 220 aaKnown RBP16.81■□□□□ 0.28
SMPD3-204ENST00000563396 TRIB2Q92519 343 aa16.81■□□□□ 0.28
SMPD3-204ENST00000563396 NUDT12Q9BQG2 462 aa16.81■□□□□ 0.28
SMPD3-204ENST00000563396 LNPKQ9C0E8 428 aa16.81■□□□□ 0.28
SMPD3-204ENST00000563396 RNF208Q9H0X6 261 aa16.81■□□□□ 0.28
SMPD3-204ENST00000563396 OSBPL3Q9H4L5 887 aa16.81■□□□□ 0.28
SMPD3-204ENST00000563396 BIN2Q9UBW5 565 aaPredicted RBP16.81■□□□□ 0.28
SMPD3-204ENST00000563396 ALPK3Q96L96 1907 aa16.8■□□□□ 0.28
SMPD3-204ENST00000563396 MINDY4BA8MYZ0 360 aa16.8■□□□□ 0.28
SMPD3-204ENST00000563396 NUCB1Q02818 461 aa16.8■□□□□ 0.28
SMPD3-204ENST00000563396 COG2Q14746 738 aa16.8■□□□□ 0.28
SMPD3-204ENST00000563396 MAP3K21Q5TCX8 1036 aa16.8■□□□□ 0.28
SMPD3-204ENST00000563396 PLEKHH3Q7Z736 793 aa16.8■□□□□ 0.28
SMPD3-204ENST00000563396 MB21D1Q8N884 522 aa16.8■□□□□ 0.28
SMPD3-204ENST00000563396 APBA2Q99767 749 aa16.8■□□□□ 0.28
SMPD3-204ENST00000563396 NACAP1Q9BZK3 213 aa16.8■□□□□ 0.28
SMPD3-204ENST00000563396 TANGO6Q9C0B7 1094 aa16.8■□□□□ 0.28
SMPD3-204ENST00000563396 ZNF287Q9HBT7 754 aa16.8■□□□□ 0.28
SMPD3-204ENST00000563396 SYNPO2Q9UMS6 1093 aa16.8■□□□□ 0.28
SMPD3-204ENST00000563396 ZMYM6O95789 1325 aa16.79■□□□□ 0.28
SMPD3-204ENST00000563396 IGHDP01880 384 aa16.79■□□□□ 0.28
SMPD3-204ENST00000563396 RGS2P41220 211 aa16.79■□□□□ 0.28
SMPD3-204ENST00000563396 GRB14Q14449 540 aa16.79■□□□□ 0.28
SMPD3-204ENST00000563396 CHD1LQ86WJ1 897 aa16.79■□□□□ 0.28
SMPD3-204ENST00000563396 TRMT44Q8IYL2 757 aaKnown RBP16.79■□□□□ 0.28
SMPD3-204ENST00000563396 CRISPLD2Q9H0B8 497 aa16.79■□□□□ 0.28
SMPD3-204ENST00000563396 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.79■□□□□ 0.28
SMPD3-204ENST00000563396 NAPBQ9H115 298 aa16.79■□□□□ 0.28
SMPD3-204ENST00000563396 NYAP2Q9P242 653 aa16.79■□□□□ 0.28
SMPD3-204ENST00000563396 PLXNA1Q9UIW2 1896 aa16.78■□□□□ 0.28
SMPD3-204ENST00000563396 SGPL1O95470 568 aa16.78■□□□□ 0.28
SMPD3-204ENST00000563396 HOXC6P09630 235 aa16.78■□□□□ 0.28
SMPD3-204ENST00000563396 DSG3P32926 999 aa16.78■□□□□ 0.28
SMPD3-204ENST00000563396 SPICE1Q8N0Z3 855 aa16.78■□□□□ 0.28
SMPD3-204ENST00000563396 SHCBP1Q8NEM2 672 aa16.78■□□□□ 0.28
SMPD3-204ENST00000563396 MKNK2Q9HBH9 465 aa16.78■□□□□ 0.28
SMPD3-204ENST00000563396 GOPCQ9HD26 462 aa16.78■□□□□ 0.28
SMPD3-204ENST00000563396 HELLSQ9NRZ9 838 aa16.78■□□□□ 0.28
SMPD3-204ENST00000563396 HOXC10Q9NYD6 342 aa16.78■□□□□ 0.28
SMPD3-204ENST00000563396 ADAMTS5Q9UNA0 930 aa16.78■□□□□ 0.28
SMPD3-204ENST00000563396 RPTORQ8N122 1335 aa16.77■□□□□ 0.28
SMPD3-204ENST00000563396 A0A0D9SFI3 127 aa16.77■□□□□ 0.28
SMPD3-204ENST00000563396 SLC15A5A6NIM6 579 aa16.77■□□□□ 0.28
SMPD3-204ENST00000563396 FLOT1O75955 427 aa16.77■□□□□ 0.28
SMPD3-204ENST00000563396 APPP05067 770 aa16.77■□□□□ 0.28
SMPD3-204ENST00000563396 ZKSCAN1P17029 563 aaPredicted RBP16.77■□□□□ 0.28
SMPD3-204ENST00000563396 CYP2B6P20813 491 aa16.77■□□□□ 0.28
SMPD3-204ENST00000563396 PTPREP23469 700 aa16.77■□□□□ 0.28
SMPD3-204ENST00000563396 PPARAQ07869 468 aa16.77■□□□□ 0.28
SMPD3-204ENST00000563396 MAP2K5Q13163 448 aa16.77■□□□□ 0.28
SMPD3-204ENST00000563396 CCDC129Q6ZRS4 1044 aa16.77■□□□□ 0.28
SMPD3-204ENST00000563396 CCAR1Q8IX12 1150 aaKnown RBP16.77■□□□□ 0.28
SMPD3-204ENST00000563396 ATG4CQ96DT6 458 aa16.77■□□□□ 0.28
SMPD3-204ENST00000563396 MOV10L1Q9BXT6 1211 aaKnown RBP16.77■□□□□ 0.28
SMPD3-204ENST00000563396 SPATC1LQ9H0A9 340 aa16.77■□□□□ 0.28
SMPD3-204ENST00000563396 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.77■□□□□ 0.28
SMPD3-204ENST00000563396 SUPT16HQ9Y5B9 1047 aaKnown RBP16.77■□□□□ 0.28
SMPD3-204ENST00000563396 IGHA2P01877 340 aa16.76■□□□□ 0.27
SMPD3-204ENST00000563396 TRIM32Q13049 653 aa16.76■□□□□ 0.27
SMPD3-204ENST00000563396 PLEKHM2Q8IWE5 1019 aa16.76■□□□□ 0.27
SMPD3-204ENST00000563396 DEFB118Q96PH6 123 aa16.76■□□□□ 0.27
SMPD3-204ENST00000563396 ANAPC4Q9UJX5 808 aa16.76■□□□□ 0.27
SMPD3-204ENST00000563396 ZNFX1Q9P2E3 1918 aaKnown RBP16.75■□□□□ 0.27
SMPD3-204ENST00000563396 PRDM1O75626 825 aa16.75■□□□□ 0.27
SMPD3-204ENST00000563396 FARP2O94887 1054 aaPredicted RBP16.75■□□□□ 0.27
SMPD3-204ENST00000563396 PDE4BQ07343 736 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms