RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 CTSBP07858 339 aa8.22□□□□□ -1.09
LRRC28-220ENST00000561253 TNNI2P48788 182 aa8.22□□□□□ -1.09
LRRC28-220ENST00000561253 PAK2Q13177 524 aa8.22□□□□□ -1.09
LRRC28-220ENST00000561253 GRIK4Q16099 956 aa8.22□□□□□ -1.09
LRRC28-220ENST00000561253 FBXL19Q6PCT2 694 aa8.22□□□□□ -1.09
LRRC28-220ENST00000561253 MPRIPQ6WCQ1 1025 aa8.22□□□□□ -1.09
LRRC28-220ENST00000561253 CCDC84Q86UT8 332 aaPredicted RBP8.22□□□□□ -1.09
LRRC28-220ENST00000561253 RAD18Q9NS91 495 aa8.22□□□□□ -1.09
LRRC28-220ENST00000561253 KIF7Q2M1P5 1343 aa8.22□□□□□ -1.09
LRRC28-220ENST00000561253 WASHC2AQ641Q2 1341 aa8.22□□□□□ -1.09
LRRC28-220ENST00000561253 MYOM1P52179 1685 aa8.21□□□□□ -1.09
LRRC28-220ENST00000561253 LIG1P18858 919 aa8.21□□□□□ -1.1
LRRC28-220ENST00000561253 GARTP22102 1010 aa8.21□□□□□ -1.1
LRRC28-220ENST00000561253 EXOSC6Q5RKV6 272 aaKnown RBP8.21□□□□□ -1.1
LRRC28-220ENST00000561253 BNC2Q6ZN30 1099 aaPredicted RBP8.21□□□□□ -1.1
LRRC28-220ENST00000561253 GPBAR1Q8TDU6 330 aa8.21□□□□□ -1.1
LRRC28-220ENST00000561253 GAL3ST3Q96A11 431 aa8.21□□□□□ -1.1
LRRC28-220ENST00000561253 RUSC1Q9BVN2 902 aa8.21□□□□□ -1.1
LRRC28-220ENST00000561253 KCNQ5Q9NR82 932 aa8.21□□□□□ -1.1
LRRC28-220ENST00000561253 PCDHA4Q9UN74 947 aa8.21□□□□□ -1.1
LRRC28-220ENST00000561253 SPATA31A3Q5VYP0 1347 aa8.21□□□□□ -1.1
LRRC28-220ENST00000561253 A0A1W2PP64 1363 aa8.21□□□□□ -1.1
LRRC28-220ENST00000561253 PNPLA6Q8IY17 1366 aa8.21□□□□□ -1.1
LRRC28-220ENST00000561253 CCDC7Q96M83 1385 aa8.21□□□□□ -1.1
LRRC28-220ENST00000561253 ITSN1Q15811 1721 aa8.2□□□□□ -1.1
LRRC28-220ENST00000561253 NRKQ7Z2Y5 1582 aa8.2□□□□□ -1.1
LRRC28-220ENST00000561253 WISP1O95388 367 aa8.2□□□□□ -1.1
LRRC28-220ENST00000561253 DLGAP3O95886 979 aa8.2□□□□□ -1.1
LRRC28-220ENST00000561253 F13A1P00488 732 aa8.2□□□□□ -1.1
LRRC28-220ENST00000561253 SHISA2Q6UWI4 295 aa8.2□□□□□ -1.1
LRRC28-220ENST00000561253 FAM196AQ6ZSG2 479 aa8.2□□□□□ -1.1
LRRC28-220ENST00000561253 KRT28Q7Z3Y7 464 aa8.2□□□□□ -1.1
LRRC28-220ENST00000561253 GATAD2BQ8WXI9 593 aa8.2□□□□□ -1.1
LRRC28-220ENST00000561253 GPRASP2Q96D09 838 aa8.2□□□□□ -1.1
LRRC28-220ENST00000561253 RNF208Q9H0X6 261 aa8.2□□□□□ -1.1
LRRC28-220ENST00000561253 USP21Q9UK80 565 aa8.2□□□□□ -1.1
LRRC28-220ENST00000561253 ALS2Q96Q42 1657 aa8.2□□□□□ -1.1
LRRC28-220ENST00000561253 BRD4O60885 1362 aaPredicted RBP8.2□□□□□ -1.1
LRRC28-220ENST00000561253 ANKRD36BQ8N2N9 1353 aa8.2□□□□□ -1.1
LRRC28-220ENST00000561253 TNS3Q68CZ2 1445 aa8.2□□□□□ -1.1
LRRC28-220ENST00000561253 ZNF862O60290 1169 aa8.19□□□□□ -1.1
LRRC28-220ENST00000561253 GREM1O60565 184 aa8.19□□□□□ -1.1
LRRC28-220ENST00000561253 BPNT1O95861 308 aa8.19□□□□□ -1.1
LRRC28-220ENST00000561253 APBA3O96018 575 aa8.19□□□□□ -1.1
LRRC28-220ENST00000561253 SLFN14P0C7P3 912 aa8.19□□□□□ -1.1
LRRC28-220ENST00000561253 COL8A1P27658 744 aa8.19□□□□□ -1.1
LRRC28-220ENST00000561253 VPS37DQ86XT2 251 aa8.19□□□□□ -1.1
LRRC28-220ENST00000561253 NACC1Q96RE7 527 aa8.19□□□□□ -1.1
LRRC28-220ENST00000561253 TINF2Q9BSI4 451 aa8.19□□□□□ -1.1
LRRC28-220ENST00000561253 NT5C1AQ9BXI3 368 aa8.19□□□□□ -1.1
LRRC28-220ENST00000561253 CACNA2D2Q9NY47 1150 aa8.19□□□□□ -1.1
LRRC28-220ENST00000561253 PHLPP1O60346 1717 aa8.19□□□□□ -1.1
LRRC28-220ENST00000561253 JCADQ9P266 1359 aa8.19□□□□□ -1.1
LRRC28-220ENST00000561253 MED1Q15648 1581 aaPredicted RBP8.18□□□□□ -1.1
LRRC28-220ENST00000561253 COL22A1Q8NFW1 1626 aaPredicted RBP8.18□□□□□ -1.1
LRRC28-220ENST00000561253 AKAP12Q02952 1782 aa8.18□□□□□ -1.1
LRRC28-220ENST00000561253 AOC2O75106 756 aa8.18□□□□□ -1.1
LRRC28-220ENST00000561253 PTPN11Q06124 597 aaPredicted RBP8.18□□□□□ -1.1
LRRC28-220ENST00000561253 APOBRQ0VD83 1088 aa8.18□□□□□ -1.1
LRRC28-220ENST00000561253 KIF4BQ2VIQ3 1234 aa8.18□□□□□ -1.1
LRRC28-220ENST00000561253 NUTM2GQ5VZR2 741 aa8.18□□□□□ -1.1
LRRC28-220ENST00000561253 KIAA1211Q6ZU35 1233 aa8.18□□□□□ -1.1
LRRC28-220ENST00000561253 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.18□□□□□ -1.1
LRRC28-220ENST00000561253 ALYREFQ86V81 257 aaKnown RBP8.18□□□□□ -1.1
LRRC28-220ENST00000561253 NGDNQ8NEJ9 315 aaKnown RBP8.18□□□□□ -1.1
LRRC28-220ENST00000561253 LRRC59Q96AG4 307 aaKnown RBP8.18□□□□□ -1.1
LRRC28-220ENST00000561253 LENG1Q96BZ8 264 aaPredicted RBP8.18□□□□□ -1.1
LRRC28-220ENST00000561253 WDR89Q96FK6 387 aaPredicted RBP8.18□□□□□ -1.1
LRRC28-220ENST00000561253 EAF1Q96JC9 268 aaPredicted RBP8.18□□□□□ -1.1
LRRC28-220ENST00000561253 WDR18Q9BV38 432 aa8.18□□□□□ -1.1
LRRC28-220ENST00000561253 CYP4F12Q9HCS2 524 aa8.18□□□□□ -1.1
LRRC28-220ENST00000561253 UBP1Q9NZI7 540 aa8.18□□□□□ -1.1
LRRC28-220ENST00000561253 TTC21BQ7Z4L5 1316 aa8.18□□□□□ -1.1
LRRC28-220ENST00000561253 EDC4Q6P2E9 1401 aaKnown RBP8.18□□□□□ -1.1
LRRC28-220ENST00000561253 LRP6O75581 1613 aa8.18□□□□□ -1.1
LRRC28-220ENST00000561253 MON2Q7Z3U7 1717 aa8.17□□□□□ -1.1
LRRC28-220ENST00000561253 MEGF11A6BM72 1044 aa8.17□□□□□ -1.1
LRRC28-220ENST00000561253 C9orf172C9J069 976 aa8.17□□□□□ -1.1
LRRC28-220ENST00000561253 RNF225M0QZC1 329 aaPredicted RBP8.17□□□□□ -1.1
LRRC28-220ENST00000561253 TLR3O15455 904 aaKnown RBP8.17□□□□□ -1.1
LRRC28-220ENST00000561253 SELPP16109 830 aa8.17□□□□□ -1.1
LRRC28-220ENST00000561253 GJA8P48165 433 aa8.17□□□□□ -1.1
LRRC28-220ENST00000561253 RPL6Q02878 288 aaKnown RBP8.17□□□□□ -1.1
LRRC28-220ENST00000561253 MPP2Q14168 576 aa8.17□□□□□ -1.1
LRRC28-220ENST00000561253 CWF19L2Q2TBE0 894 aaKnown RBP8.17□□□□□ -1.1
LRRC28-220ENST00000561253 AKAP4Q5JQC9 854 aa8.17□□□□□ -1.1
LRRC28-220ENST00000561253 NKD1Q969G9 470 aa8.17□□□□□ -1.1
LRRC28-220ENST00000561253 ELMO3Q96BJ8 720 aa8.17□□□□□ -1.1
LRRC28-220ENST00000561253 SPATA32Q96LK8 384 aa8.17□□□□□ -1.1
LRRC28-220ENST00000561253 TMPRSS13Q9BYE2 586 aa8.17□□□□□ -1.1
LRRC28-220ENST00000561253 USP19O94966 1318 aa8.17□□□□□ -1.1
LRRC28-220ENST00000561253 SHPRHQ149N8 1683 aa8.17□□□□□ -1.1
LRRC28-220ENST00000561253 OVOS2A0A0J9YW53 1432 aa8.16□□□□□ -1.1
LRRC28-220ENST00000561253 FAM221AA4D161 298 aa8.16□□□□□ -1.1
LRRC28-220ENST00000561253 PIK3C2AO00443 1686 aa8.16□□□□□ -1.1
LRRC28-220ENST00000561253 ARHGEF10O15013 1369 aa8.16□□□□□ -1.1
LRRC28-220ENST00000561253 CILPO75339 1184 aa8.16□□□□□ -1.1
LRRC28-220ENST00000561253 NRG1Q02297 640 aaPredicted RBP8.16□□□□□ -1.1
LRRC28-220ENST00000561253 OVOS2Q6IE36 1432 aa8.16□□□□□ -1.1
LRRC28-220ENST00000561253 FDX2Q6P4F2 183 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms