RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	NR2E3	Q9Y5X4	410 aa		11.16	□□□□□ -0.62
YBX3-215	ENST00000544504	DDTL	A6NHG4	134 aa	Predicted RBP	11.15	□□□□□ -0.62
YBX3-215	ENST00000544504	GNRH1	P01148	92 aa		11.15	□□□□□ -0.62
YBX3-215	ENST00000544504	HSP90AA1	P07900	732 aa	Known RBP	11.15	□□□□□ -0.62
YBX3-215	ENST00000544504	RASA1	P20936	1047 aa		11.15	□□□□□ -0.62
YBX3-215	ENST00000544504	PRMT2	P55345	433 aa		11.15	□□□□□ -0.62
YBX3-215	ENST00000544504	WTAP	Q15007	396 aa		11.15	□□□□□ -0.62
YBX3-215	ENST00000544504	TAF1C	Q15572	869 aa	Predicted RBP	11.15	□□□□□ -0.62
YBX3-215	ENST00000544504	TMEM67	Q5HYA8	995 aa		11.15	□□□□□ -0.62
YBX3-215	ENST00000544504	NEDD1	Q8NHV4	660 aa		11.15	□□□□□ -0.62
YBX3-215	ENST00000544504	OPTN	Q96CV9	577 aa		11.15	□□□□□ -0.62
YBX3-215	ENST00000544504	DYNLL2	Q96FJ2	89 aa		11.15	□□□□□ -0.62
YBX3-215	ENST00000544504	MS4A4A	Q96JQ5	239 aa		11.15	□□□□□ -0.62
YBX3-215	ENST00000544504	TBC1D2	Q9BYX2	928 aa		11.15	□□□□□ -0.62
YBX3-215	ENST00000544504	GINM1	Q9NU53	330 aa		11.15	□□□□□ -0.62
YBX3-215	ENST00000544504	PLIN4	Q96Q06	1357 aa		11.15	□□□□□ -0.63
YBX3-215	ENST00000544504	CCDC69	A6NI79	296 aa		11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	SH2B2	O14492	632 aa	Predicted RBP	11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	DHX16	O60231	1041 aa	Known RBP	11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	USP2	O75604	605 aa	Predicted RBP	11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	PRDM1	O75626	825 aa		11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	CPA1	P15085	419 aa		11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	RCAN1	P53805	252 aa		11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	EVC	P57679	992 aa		11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	TFAP4	Q01664	338 aa		11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	KIF22	Q14807	665 aa		11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	NFXL1	Q6ZNB6	911 aa		11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	CYB5R4	Q7L1T6	521 aa		11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	SH3BP5L	Q7L8J4	393 aa		11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	SGMS1	Q86VZ5	419 aa		11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	DGKH	Q86XP1	1220 aa		11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	ZFPM1	Q8IX07	1006 aa		11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	STK11IP	Q8N1F8	1099 aa		11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	BRF1	Q92994	677 aa		11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	SHISA4	Q96DD7	197 aa		11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	ZNF274	Q96GC6	653 aa	Predicted RBP	11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	11.14	□□□□□ -0.63	4e-26	■■■□□ 16.2
YBX3-215	ENST00000544504	CABP5	Q9NP86	173 aa		11.14	□□□□□ -0.63
YBX3-215	ENST00000544504	CALM1	P0DP23	149 aa		11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	CALM2	P0DP24	149 aa		11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	CALM3	P0DP25	149 aa		11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	GTF2A2	P52657	109 aa		11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	ANTXR2	P58335	489 aa		11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	LACTB	P83111	547 aa	Predicted RBP	11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	MAP3K10	Q02779	954 aa		11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	TOB2	Q14106	344 aa	Predicted RBP	11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	PPP2R5B	Q15173	497 aa		11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	CERKL	Q49MI3	558 aa	Predicted RBP	11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	NBPF12	Q5TAG4	269 aa	Predicted RBP	11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	TATDN1	Q6P1N9	297 aa		11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	UBE2Q1	Q7Z7E8	422 aa		11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	IGDCC4	Q8TDY8	1250 aa		11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	BRI3BP	Q8WY22	251 aa		11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	ANKS1A	Q92625	1134 aa		11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	TMEM39B	Q9GZU3	492 aa		11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	ELP3	Q9H9T3	547 aa		11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	INCENP	Q9NQS7	918 aa		11.13	□□□□□ -0.63
YBX3-215	ENST00000544504	TNKS	O95271	1327 aa		11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	MYH8	P13535	1937 aa		11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	CCL15-CCL14	A0A0B4J2E2	113 aa		11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	TLR2	O60603	784 aa		11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	SHMT1	P34896	483 aa		11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	GJA8	P48165	433 aa		11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	CCL15	Q16663	113 aa		11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	IFIT1B	Q5T764	474 aa	Known RBP	11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	CPLX2	Q6PUV4	134 aa	Known RBP	11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	TMEM179	Q6ZVK1	233 aa		11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	SLC44A5	Q8NCS7	719 aa		11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	INTS4	Q96HW7	963 aa	Known RBP	11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	TMX3	Q96JJ7	454 aa		11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	TCEANC2	Q96MN5	208 aa		11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	SLK	Q9H2G2	1235 aa	Predicted RBP	11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	KANSL2	Q9H9L4	492 aa		11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	LY9	Q9HBG7	655 aa		11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	SLC12A7	Q9Y666	1083 aa		11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	TACC3	Q9Y6A5	838 aa		11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	SPTBN5	Q9NRC6	3674 aa	Known RBP	11.12	□□□□□ -0.63
YBX3-215	ENST00000544504	KLF18	A0A0U1RQI7	1052 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	CCDC196	A0A1B0GTZ2	297 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	SOX1	O00570	391 aa	Predicted RBP	11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	DDAH1	O94760	285 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	CD2BP2	O95400	341 aa	Known RBP	11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	GJB1	P08034	283 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	CUL4A	Q13619	759 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	MTFR1	Q15390	333 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	SEC23A	Q15436	765 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	ABCB5	Q2M3G0	1257 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	FAM47A	Q5JRC9	791 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	GPR153	Q6NV75	609 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	NOL8	Q76FK4	1167 aa	Known RBP	11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	CHST3	Q7LGC8	479 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	CATIP	Q7Z7H3	387 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	FAM43A	Q8N2R8	423 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	ENAH	Q8N8S7	591 aa	Predicted RBP	11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	LRCH3	Q96II8	777 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	TEPSIN	Q96N21	525 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	ZNF341	Q9BYN7	854 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	LRRC2	Q9BYS8	371 aa		11.11	□□□□□ -0.63

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