RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 SEPT2Q15019 361 aa21.69■■□□□ 1.06
CLSTN3-214ENST00000542663 GJC2Q5T442 439 aaPredicted RBP21.69■■□□□ 1.06
CLSTN3-214ENST00000542663 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.69■■□□□ 1.06
CLSTN3-214ENST00000542663 MOV10L1Q9BXT6 1211 aaKnown RBP21.69■■□□□ 1.06
CLSTN3-214ENST00000542663 ADORA2AP29274 412 aa21.68■■□□□ 1.06
CLSTN3-214ENST00000542663 MAP3K12Q12852 859 aa21.68■■□□□ 1.06
CLSTN3-214ENST00000542663 KIAA1755Q5JYT7 1200 aa21.67■■□□□ 1.06
CLSTN3-214ENST00000542663 ANO1Q5XXA6 986 aa21.67■■□□□ 1.06
CLSTN3-214ENST00000542663 OLFML2BQ68BL8 750 aa21.67■■□□□ 1.06
CLSTN3-214ENST00000542663 DPP9Q86TI2 863 aa21.67■■□□□ 1.06
CLSTN3-214ENST00000542663 ATP11BQ9Y2G3 1177 aa21.67■■□□□ 1.06
CLSTN3-214ENST00000542663 COBLO75128 1261 aa21.66■■□□□ 1.06
CLSTN3-214ENST00000542663 COG2Q14746 738 aa21.66■■□□□ 1.06
CLSTN3-214ENST00000542663 SHHQ15465 462 aa21.66■■□□□ 1.06
CLSTN3-214ENST00000542663 TMED8Q6PL24 325 aaPredicted RBP21.66■■□□□ 1.06
CLSTN3-214ENST00000542663 SLC39A5Q6ZMH5 540 aa21.66■■□□□ 1.06
CLSTN3-214ENST00000542663 SPATC1LQ9H0A9 340 aa21.66■■□□□ 1.06
CLSTN3-214ENST00000542663 PRKAG2Q9UGJ0 569 aa21.66■■□□□ 1.06
CLSTN3-214ENST00000542663 STRNO43815 780 aa21.65■■□□□ 1.06
CLSTN3-214ENST00000542663 POLR3DP05423 398 aaPredicted RBP21.65■■□□□ 1.06
CLSTN3-214ENST00000542663 RLBP1P12271 317 aa21.65■■□□□ 1.06
CLSTN3-214ENST00000542663 ERCC3P19447 782 aa21.65■■□□□ 1.06
CLSTN3-214ENST00000542663 SNX17Q15036 470 aa21.65■■□□□ 1.06
CLSTN3-214ENST00000542663 C9orf50Q5SZB4 431 aa21.65■■□□□ 1.06
CLSTN3-214ENST00000542663 ZNF697Q5TEC3 545 aa21.65■■□□□ 1.06
CLSTN3-214ENST00000542663 ARRDC4Q8NCT1 418 aa21.65■■□□□ 1.06
CLSTN3-214ENST00000542663 SHCBP1Q8NEM2 672 aa21.65■■□□□ 1.06
CLSTN3-214ENST00000542663 HOXC10Q9NYD6 342 aa21.65■■□□□ 1.06
CLSTN3-214ENST00000542663 MAGEB6P1A0A0J9YX57 407 aa21.64■■□□□ 1.05
CLSTN3-214ENST00000542663 CCER2I3L3R5 266 aa21.64■■□□□ 1.05
CLSTN3-214ENST00000542663 SEPT4O43236 478 aa21.64■■□□□ 1.05
CLSTN3-214ENST00000542663 TANGO6Q9C0B7 1094 aa21.64■■□□□ 1.05
CLSTN3-214ENST00000542663 SPTBN5Q9NRC6 3674 aaKnown RBP21.64■■□□□ 1.05
CLSTN3-214ENST00000542663 KBTBD13C9JR72 458 aa21.63■■□□□ 1.05
CLSTN3-214ENST00000542663 TRIM60Q495X7 471 aa21.63■■□□□ 1.05
CLSTN3-214ENST00000542663 PRAMEF19Q5SWL8 479 aa21.63■■□□□ 1.05
CLSTN3-214ENST00000542663 AACSQ86V21 672 aa21.63■■□□□ 1.05
CLSTN3-214ENST00000542663 MPHOSPH10O00566 681 aaKnown RBP21.62■■□□□ 1.05
CLSTN3-214ENST00000542663 CEP85Q6P2H3 762 aa21.62■■□□□ 1.05
CLSTN3-214ENST00000542663 SIAH1Q8IUQ4 282 aa21.62■■□□□ 1.05
CLSTN3-214ENST00000542663 ITPRIPQ8IWB1 547 aa21.62■■□□□ 1.05
CLSTN3-214ENST00000542663 BADQ92934 168 aa21.62■■□□□ 1.05
CLSTN3-214ENST00000542663 CDX2Q99626 313 aaPredicted RBP21.62■■□□□ 1.05
CLSTN3-214ENST00000542663 PDLIM7Q9NR12 457 aa21.62■■□□□ 1.05
CLSTN3-214ENST00000542663 MCM9Q9NXL9 1143 aa21.62■■□□□ 1.05
CLSTN3-214ENST00000542663 EXOC6BQ9Y2D4 811 aa21.62■■□□□ 1.05
CLSTN3-214ENST00000542663 GREB1LQ9C091 1923 aaPredicted RBP21.61■■□□□ 1.05
CLSTN3-214ENST00000542663 PDE6AP16499 860 aa21.61■■□□□ 1.05
CLSTN3-214ENST00000542663 DSG3P32926 999 aa21.61■■□□□ 1.05
CLSTN3-214ENST00000542663 ADCYAP1R1P41586 468 aa21.61■■□□□ 1.05
CLSTN3-214ENST00000542663 LRRC41Q15345 812 aa21.61■■□□□ 1.05
CLSTN3-214ENST00000542663 SH3RF1Q7Z6J0 888 aa21.61■■□□□ 1.05
CLSTN3-214ENST00000542663 CLEC10AQ8IUN9 316 aa21.61■■□□□ 1.05
CLSTN3-214ENST00000542663 SLC44A5Q8NCS7 719 aa21.61■■□□□ 1.05
CLSTN3-214ENST00000542663 SDR42E1Q8WUS8 393 aa21.61■■□□□ 1.05
CLSTN3-214ENST00000542663 CRNKL1Q9BZJ0 848 aaKnown RBP21.61■■□□□ 1.05
CLSTN3-214ENST00000542663 DCP1AQ9NPI6 582 aaPredicted RBP21.61■■□□□ 1.05
CLSTN3-214ENST00000542663 PRDM5Q9NQX1 630 aaPredicted RBP21.61■■□□□ 1.05
CLSTN3-214ENST00000542663 TCRBV5S4A2TA0A5A2 114 aa21.6■■□□□ 1.05
CLSTN3-214ENST00000542663 TRIM43BA6NCK2 446 aa21.6■■□□□ 1.05
CLSTN3-214ENST00000542663 CYP2D6P10635 497 aa21.6■■□□□ 1.05
CLSTN3-214ENST00000542663 FAM47AQ5JRC9 791 aa21.6■■□□□ 1.05
CLSTN3-214ENST00000542663 SLC9C2Q5TAH2 1124 aa21.6■■□□□ 1.05
CLSTN3-214ENST00000542663 FTSJ3Q8IY81 847 aaKnown RBP21.6■■□□□ 1.05
CLSTN3-214ENST00000542663 ABRAQ8N0Z2 381 aa21.6■■□□□ 1.05
CLSTN3-214ENST00000542663 MB21D1Q8N884 522 aa21.6■■□□□ 1.05
CLSTN3-214ENST00000542663 FERMT2Q96AC1 680 aa21.6■■□□□ 1.05
CLSTN3-214ENST00000542663 TRIM43Q96BQ3 446 aaPredicted RBP21.6■■□□□ 1.05
CLSTN3-214ENST00000542663 ATG4CQ96DT6 458 aa21.6■■□□□ 1.05
CLSTN3-214ENST00000542663 MAML3Q96JK9 1138 aa21.6■■□□□ 1.05
CLSTN3-214ENST00000542663 SEMA6BQ9H3T3 888 aa21.6■■□□□ 1.05
CLSTN3-214ENST00000542663 MROH8Q9H579 483 aa21.6■■□□□ 1.05
CLSTN3-214ENST00000542663 ZNF532Q9HCE3 1301 aa21.59■■□□□ 1.05
CLSTN3-214ENST00000542663 MYCNP04198 464 aaPredicted RBP21.59■■□□□ 1.05
CLSTN3-214ENST00000542663 PLS1Q14651 629 aa21.59■■□□□ 1.05
CLSTN3-214ENST00000542663 C1orf53Q5VUE5 145 aa21.59■■□□□ 1.05
CLSTN3-214ENST00000542663 TMEM179Q6ZVK1 233 aa21.59■■□□□ 1.05
CLSTN3-214ENST00000542663 NCAPG2Q86XI2 1143 aa21.59■■□□□ 1.05
CLSTN3-214ENST00000542663 LCORLQ8N3X6 602 aa21.59■■□□□ 1.05
CLSTN3-214ENST00000542663 TTYH1Q9H313 450 aaPredicted RBP21.59■■□□□ 1.05
CLSTN3-214ENST00000542663 IL1RAPL2Q9NP60 686 aa21.59■■□□□ 1.05
CLSTN3-214ENST00000542663 MCM3APO60318 1980 aa21.59■■□□□ 1.05
CLSTN3-214ENST00000542663 FLOT1O75955 427 aa21.58■■□□□ 1.05
CLSTN3-214ENST00000542663 TTF1Q15361 905 aaPredicted RBP21.58■■□□□ 1.05
CLSTN3-214ENST00000542663 ERC1Q8IUD2 1116 aa21.58■■□□□ 1.05
CLSTN3-214ENST00000542663 SPICE1Q8N0Z3 855 aa21.58■■□□□ 1.05
CLSTN3-214ENST00000542663 DYNLL2Q96FJ2 89 aa21.58■■□□□ 1.05
CLSTN3-214ENST00000542663 MYH4Q9Y623 1939 aa21.57■■□□□ 1.04
CLSTN3-214ENST00000542663 SMIM22K7EJ46 135 aa21.57■■□□□ 1.04
CLSTN3-214ENST00000542663 AKR1B1P15121 316 aa21.57■■□□□ 1.04
CLSTN3-214ENST00000542663 ITGB8P26012 769 aa21.57■■□□□ 1.04
CLSTN3-214ENST00000542663 SMAD3P84022 425 aaKnown RBP21.57■■□□□ 1.04
CLSTN3-214ENST00000542663 MAFAQ8NHW3 353 aaPredicted RBP21.57■■□□□ 1.04
CLSTN3-214ENST00000542663 SLC5A4Q9NY91 659 aa21.57■■□□□ 1.04
CLSTN3-214ENST00000542663 TMX2Q9Y320 296 aa21.57■■□□□ 1.04
CLSTN3-214ENST00000542663 TMEM132BQ14DG7 1078 aa21.56■■□□□ 1.04
CLSTN3-214ENST00000542663 RHPN1Q8TCX5 695 aa21.56■■□□□ 1.04
CLSTN3-214ENST00000542663 MYLIPQ8WY64 445 aa21.56■■□□□ 1.04
CLSTN3-214ENST00000542663 VCPKMTQ9H867 229 aa21.56■■□□□ 1.04
CLSTN3-214ENST00000542663 SWAP70Q9UH65 585 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms