RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 FLT1P17948 1338 aa15.79■□□□□ 0.12
RTN3-210ENST00000540798 BMP15O95972 392 aa15.79■□□□□ 0.12
RTN3-210ENST00000540798 NOVP48745 357 aa15.79■□□□□ 0.12
RTN3-210ENST00000540798 MFSD14BQ5SR56 506 aa15.79■□□□□ 0.12
RTN3-210ENST00000540798 MAPKAPK5Q8IW41 473 aa15.79■□□□□ 0.12
RTN3-210ENST00000540798 BRMS1Q9HCU9 246 aa15.79■□□□□ 0.12
RTN3-210ENST00000540798 MAD2L2Q9UI95 211 aa15.79■□□□□ 0.12
RTN3-210ENST00000540798 SRGNP10124 158 aa15.79■□□□□ 0.12
RTN3-210ENST00000540798 CCDC144BQ3MJ40 725 aa15.79■□□□□ 0.12
RTN3-210ENST00000540798 NLGN1Q8N2Q7 840 aa15.79■□□□□ 0.12
RTN3-210ENST00000540798 SUGT1Q9Y2Z0 365 aa15.79■□□□□ 0.12
RTN3-210ENST00000540798 ZRSR1Q15695 479 aaKnown RBP15.79■□□□□ 0.12
RTN3-210ENST00000540798 COL23A1Q86Y22 540 aaPredicted RBP15.79■□□□□ 0.12
RTN3-210ENST00000540798 CNNM3Q8NE01 707 aa15.79■□□□□ 0.12
RTN3-210ENST00000540798 COA1Q9GZY4 146 aa15.79■□□□□ 0.12
RTN3-210ENST00000540798 HSD3B7Q9H2F3 369 aa15.79■□□□□ 0.12
RTN3-210ENST00000540798 MKNK2Q9HBH9 465 aa15.79■□□□□ 0.12
RTN3-210ENST00000540798 BIN1O00499 593 aa15.78■□□□□ 0.12
RTN3-210ENST00000540798 WNT7AO00755 349 aa15.78■□□□□ 0.12
RTN3-210ENST00000540798 TRAPPC10P48553 1259 aa15.78■□□□□ 0.12
RTN3-210ENST00000540798 SLC4A8Q2Y0W8 1093 aa15.78■□□□□ 0.12
RTN3-210ENST00000540798 TEX11Q8IYF3 940 aa15.78■□□□□ 0.12
RTN3-210ENST00000540798 CSRNP2Q9H175 543 aa15.78■□□□□ 0.12
RTN3-210ENST00000540798 USP17L3A6NCW0 530 aa15.78■□□□□ 0.12
RTN3-210ENST00000540798 USP17L4A6NCW7 530 aa15.78■□□□□ 0.12
RTN3-210ENST00000540798 SMTNL1A8MU46 457 aa15.78■□□□□ 0.12
RTN3-210ENST00000540798 ACTN4O43707 911 aaKnown RBP15.78■□□□□ 0.12
RTN3-210ENST00000540798 SARSP49591 514 aaKnown RBP15.78■□□□□ 0.12
RTN3-210ENST00000540798 SLC35G1Q2M3R5 365 aa15.78■□□□□ 0.12
RTN3-210ENST00000540798 USP17L1Q7RTZ2 530 aa15.78■□□□□ 0.12
RTN3-210ENST00000540798 SLC44A5Q8NCS7 719 aa15.78■□□□□ 0.12
RTN3-210ENST00000540798 ZNF287Q9HBT7 754 aa15.78■□□□□ 0.12
RTN3-210ENST00000540798 TPM2P07951 284 aa15.77■□□□□ 0.12
RTN3-210ENST00000540798 TSPY3P0CV98 308 aa15.77■□□□□ 0.12
RTN3-210ENST00000540798 TSPY8P0CW00 308 aa15.77■□□□□ 0.12
RTN3-210ENST00000540798 VEGFAP15692 232 aaPredicted RBP15.77■□□□□ 0.12
RTN3-210ENST00000540798 NPR1P16066 1061 aa15.77■□□□□ 0.12
RTN3-210ENST00000540798 NOM1Q5C9Z4 860 aaKnown RBP15.77■□□□□ 0.12
RTN3-210ENST00000540798 SPECC1Q5M775 1068 aa15.77■□□□□ 0.12
RTN3-210ENST00000540798 FAM177A1Q8N128 213 aaPredicted RBP15.77■□□□□ 0.12
RTN3-210ENST00000540798 SPATA20Q8TB22 786 aa15.77■□□□□ 0.12
RTN3-210ENST00000540798 FERMT2Q96AC1 680 aa15.77■□□□□ 0.12
RTN3-210ENST00000540798 PALM3A6NDB9 673 aaPredicted RBP15.77■□□□□ 0.11
RTN3-210ENST00000540798 M0R2N6 131 aa15.77■□□□□ 0.11
RTN3-210ENST00000540798 CDK8P49336 464 aa15.77■□□□□ 0.11
RTN3-210ENST00000540798 GNAQP50148 359 aa15.77■□□□□ 0.11
RTN3-210ENST00000540798 PAXIP1Q6ZW49 1069 aaPredicted RBP15.77■□□□□ 0.11
RTN3-210ENST00000540798 DRC7Q8IY82 874 aa15.77■□□□□ 0.11
RTN3-210ENST00000540798 ZNF444Q8N0Y2 327 aaPredicted RBP15.77■□□□□ 0.11
RTN3-210ENST00000540798 C17orf53Q8N3J3 647 aaPredicted RBP15.77■□□□□ 0.11
RTN3-210ENST00000540798 SAP30BPQ9UHR5 308 aaKnown RBP15.77■□□□□ 0.11
RTN3-210ENST00000540798 PLIN4Q96Q06 1357 aa15.77■□□□□ 0.11
RTN3-210ENST00000540798 ADAMTSL1Q8N6G6 1762 aa15.77■□□□□ 0.11
RTN3-210ENST00000540798 MYH8P13535 1937 aa15.77■□□□□ 0.11
RTN3-210ENST00000540798 ATP2C1P98194 919 aaPredicted RBP15.77■□□□□ 0.11
RTN3-210ENST00000540798 STAG2Q8N3U4 1231 aa15.77■□□□□ 0.11
RTN3-210ENST00000540798 NEDD1Q8NHV4 660 aa15.77■□□□□ 0.11
RTN3-210ENST00000540798 FBXW7Q969H0 707 aa15.77■□□□□ 0.11
RTN3-210ENST00000540798 PCDHA5Q9Y5H7 936 aa15.77■□□□□ 0.11
RTN3-210ENST00000540798 BAZ2BQ9UIF8 2168 aaKnown RBP15.76■□□□□ 0.11
RTN3-210ENST00000540798 C6orf229H3BNL8 230 aa15.76■□□□□ 0.11
RTN3-210ENST00000540798 POTEAQ6S8J7 498 aa15.76■□□□□ 0.11
RTN3-210ENST00000540798 TMEM47Q9BQJ4 181 aa15.76■□□□□ 0.11
RTN3-210ENST00000540798 HOOK1Q9UJC3 728 aaKnown RBP15.76■□□□□ 0.11
RTN3-210ENST00000540798 DAGLAQ9Y4D2 1042 aa15.76■□□□□ 0.11
RTN3-210ENST00000540798 GREB1LQ9C091 1923 aaPredicted RBP15.76■□□□□ 0.11
RTN3-210ENST00000540798 C10orf71Q711Q0 1435 aa15.76■□□□□ 0.11
RTN3-210ENST00000540798 FOXN1O15353 648 aa15.76■□□□□ 0.11
RTN3-210ENST00000540798 POLR2DO15514 142 aaKnown RBP15.76■□□□□ 0.11
RTN3-210ENST00000540798 BMP6P22004 513 aa15.76■□□□□ 0.11
RTN3-210ENST00000540798 POSTNQ15063 836 aa15.76■□□□□ 0.11
RTN3-210ENST00000540798 TTC38Q5R3I4 469 aa15.76■□□□□ 0.11
RTN3-210ENST00000540798 DAGLBQ8NCG7 672 aa15.76■□□□□ 0.11
RTN3-210ENST00000540798 CACTINQ8WUQ7 758 aaKnown RBP15.76■□□□□ 0.11
RTN3-210ENST00000540798 SERTAD1Q9UHV2 236 aa15.76■□□□□ 0.11
RTN3-210ENST00000540798 ADAMTS3O15072 1205 aa15.75■□□□□ 0.11
RTN3-210ENST00000540798 CALML3P27482 149 aa15.75■□□□□ 0.11
RTN3-210ENST00000540798 LRMPQ12912 555 aa15.75■□□□□ 0.11
RTN3-210ENST00000540798 KANK3Q6NY19 840 aa15.75■□□□□ 0.11
RTN3-210ENST00000540798 USP49Q70CQ1 688 aa15.75■□□□□ 0.11
RTN3-210ENST00000540798 FLAD1Q8NFF5 587 aa15.75■□□□□ 0.11
RTN3-210ENST00000540798 R3HCC1Q9Y3T6 440 aaKnown RBP15.75■□□□□ 0.11
RTN3-210ENST00000540798 MYO1BO43795 1136 aa15.75■□□□□ 0.11
RTN3-210ENST00000540798 NLRP5P59047 1200 aa15.75■□□□□ 0.11
RTN3-210ENST00000540798 SH3RF1Q7Z6J0 888 aa15.75■□□□□ 0.11
RTN3-210ENST00000540798 LZTS2Q9BRK4 669 aa15.75■□□□□ 0.11
RTN3-210ENST00000540798 CYTH3O43739 400 aa15.74■□□□□ 0.11
RTN3-210ENST00000540798 NEMFO60524 1076 aa15.74■□□□□ 0.11
RTN3-210ENST00000540798 LRRC8AQ8IWT6 810 aa15.74■□□□□ 0.11
RTN3-210ENST00000540798 EYA3Q99504 573 aa15.74■□□□□ 0.11
RTN3-210ENST00000540798 OSBPL5Q9H0X9 879 aaPredicted RBP15.74■□□□□ 0.11
RTN3-210ENST00000540798 A0A087X0B3 334 aa15.74■□□□□ 0.11
RTN3-210ENST00000540798 PRR29P0C7W0 189 aa15.74■□□□□ 0.11
RTN3-210ENST00000540798 GTF2IP78347 998 aa15.74■□□□□ 0.11
RTN3-210ENST00000540798 CERS5Q8N5B7 392 aa15.74■□□□□ 0.11
RTN3-210ENST00000540798 TRIML1Q8N9V2 468 aa15.74■□□□□ 0.11
RTN3-210ENST00000540798 PRDM10Q9NQV6 1147 aa15.74■□□□□ 0.11
RTN3-210ENST00000540798 IMPACTQ9P2X3 320 aa15.74■□□□□ 0.11
RTN3-210ENST00000540798 MAN1B1Q9UKM7 699 aa15.74■□□□□ 0.11
RTN3-210ENST00000540798 PCDHA4Q9UN74 947 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms