RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 NAPBQ9H115 298 aa17.66■□□□□ 0.42
USP28-204ENST00000537642 KANSL2Q9H9L4 492 aa17.66■□□□□ 0.42
USP28-204ENST00000537642 HELLSQ9NRZ9 838 aa17.66■□□□□ 0.42
USP28-204ENST00000537642 GJD2Q9UKL4 321 aa17.66■□□□□ 0.42
USP28-204ENST00000537642 TNRC18O15417 2968 aaPredicted RBP17.65■□□□□ 0.42
USP28-204ENST00000537642 A0A0D9SFI3 127 aa17.65■□□□□ 0.42
USP28-204ENST00000537642 MTFR1Q15390 333 aa17.65■□□□□ 0.42
USP28-204ENST00000537642 VPS53Q5VIR6 699 aa17.65■□□□□ 0.42
USP28-204ENST00000537642 LBX2Q6XYB7 198 aa17.65■□□□□ 0.42
USP28-204ENST00000537642 SLAIN1Q8ND83 568 aa17.65■□□□□ 0.42
USP28-204ENST00000537642 RILPL2Q969X0 211 aa17.65■□□□□ 0.42
USP28-204ENST00000537642 PORCNQ9H237 461 aa17.65■□□□□ 0.42
USP28-204ENST00000537642 SH2D4AQ9H788 454 aa17.65■□□□□ 0.42
USP28-204ENST00000537642 VCPKMTQ9H867 229 aa17.65■□□□□ 0.42
USP28-204ENST00000537642 RABGAP1Q9Y3P9 1069 aa17.65■□□□□ 0.42
USP28-204ENST00000537642 PARP14Q460N5 1801 aa17.64■□□□□ 0.41
USP28-204ENST00000537642 SPDYE16A6NNV3 312 aaPredicted RBP17.64■□□□□ 0.41
USP28-204ENST00000537642 PRDM1O75626 825 aa17.64■□□□□ 0.41
USP28-204ENST00000537642 ELNP15502 786 aa17.64■□□□□ 0.41
USP28-204ENST00000537642 EN2P19622 333 aaPredicted RBP17.64■□□□□ 0.41
USP28-204ENST00000537642 ATP2B2Q01814 1243 aa17.64■□□□□ 0.41
USP28-204ENST00000537642 PPARAQ07869 468 aa17.64■□□□□ 0.41
USP28-204ENST00000537642 NMIQ13287 307 aaPredicted RBP17.64■□□□□ 0.41
USP28-204ENST00000537642 SPICE1Q8N0Z3 855 aa17.64■□□□□ 0.41
USP28-204ENST00000537642 LPAR1Q92633 364 aa17.64■□□□□ 0.41
USP28-204ENST00000537642 TANGO6Q9C0B7 1094 aa17.64■□□□□ 0.41
USP28-204ENST00000537642 BTBD7Q9P203 1132 aa17.64■□□□□ 0.41
USP28-204ENST00000537642 MKI67P46013 3256 aaKnown RBP17.64■□□□□ 0.41
USP28-204ENST00000537642 MYH4Q9Y623 1939 aa17.63■□□□□ 0.41
USP28-204ENST00000537642 PDE4DIPQ5VU43 2346 aa17.63■□□□□ 0.41
USP28-204ENST00000537642 IGKV6D-41A0A0C4DH26 115 aa17.63■□□□□ 0.41
USP28-204ENST00000537642 PDE4AP27815 886 aa17.63■□□□□ 0.41
USP28-204ENST00000537642 COG2Q14746 738 aa17.63■□□□□ 0.41
USP28-204ENST00000537642 MCMDC2Q4G0Z9 681 aa17.63■□□□□ 0.41
USP28-204ENST00000537642 ZNF444Q8N0Y2 327 aaPredicted RBP17.63■□□□□ 0.41
USP28-204ENST00000537642 PXYLP1Q8TE99 480 aa17.63■□□□□ 0.41
USP28-204ENST00000537642 ZNF287Q9HBT7 754 aa17.63■□□□□ 0.41
USP28-204ENST00000537642 BIN2Q9UBW5 565 aaPredicted RBP17.63■□□□□ 0.41
USP28-204ENST00000537642 A0A0G2JMZ2 1700 aa17.62■□□□□ 0.41
USP28-204ENST00000537642 WDR46O15213 610 aaKnown RBP17.62■□□□□ 0.41
USP28-204ENST00000537642 SDSP20132 328 aa17.62■□□□□ 0.41
USP28-204ENST00000537642 MAPK4P31152 587 aa17.62■□□□□ 0.41
USP28-204ENST00000537642 ZNF589Q86UQ0 364 aaPredicted RBP17.62■□□□□ 0.41
USP28-204ENST00000537642 NYAP2Q9P242 653 aa17.62■□□□□ 0.41
USP28-204ENST00000537642 SLC3A2P08195 630 aaKnown RBP17.61■□□□□ 0.41
USP28-204ENST00000537642 CCL5P13501 91 aa17.61■□□□□ 0.41
USP28-204ENST00000537642 UBXN2AP68543 259 aa17.61■□□□□ 0.41
USP28-204ENST00000537642 PDE4BQ07343 736 aa17.61■□□□□ 0.41
USP28-204ENST00000537642 ALX1Q15699 326 aa17.61■□□□□ 0.41
USP28-204ENST00000537642 GPR142Q7Z601 462 aa17.61■□□□□ 0.41
USP28-204ENST00000537642 GOPCQ9HD26 462 aa17.61■□□□□ 0.41
USP28-204ENST00000537642 HOXC10Q9NYD6 342 aa17.61■□□□□ 0.41
USP28-204ENST00000537642 FLOT1O75955 427 aa17.6■□□□□ 0.41
USP28-204ENST00000537642 INHAP05111 366 aa17.6■□□□□ 0.41
USP28-204ENST00000537642 DSG3P32926 999 aa17.6■□□□□ 0.41
USP28-204ENST00000537642 CCNA1P78396 465 aa17.6■□□□□ 0.41
USP28-204ENST00000537642 CTDSPL2Q05D32 466 aa17.6■□□□□ 0.41
USP28-204ENST00000537642 FAM47AQ5JRC9 791 aa17.6■□□□□ 0.41
USP28-204ENST00000537642 PLEKHH3Q7Z736 793 aa17.6■□□□□ 0.41
USP28-204ENST00000537642 CCAR1Q8IX12 1150 aaKnown RBP17.6■□□□□ 0.41
USP28-204ENST00000537642 CEP95Q96GE4 821 aa17.6■□□□□ 0.41
USP28-204ENST00000537642 NUDT12Q9BQG2 462 aa17.6■□□□□ 0.41
USP28-204ENST00000537642 INCENPQ9NQS7 918 aa17.6■□□□□ 0.41
USP28-204ENST00000537642 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.6■□□□□ 0.41
USP28-204ENST00000537642 TACC3Q9Y6A5 838 aa17.6■□□□□ 0.41
USP28-204ENST00000537642 CCDC171Q6TFL3 1326 aa17.6■□□□□ 0.41
USP28-204ENST00000537642 PLIN4Q96Q06 1357 aa17.6■□□□□ 0.41
USP28-204ENST00000537642 COL11A1P12107 1806 aaPredicted RBP17.59■□□□□ 0.41
USP28-204ENST00000537642 FGAP02671 866 aa17.59■□□□□ 0.41
USP28-204ENST00000537642 HSPD1P10809 573 aaKnown RBP17.59■□□□□ 0.41
USP28-204ENST00000537642 CYP2B6P20813 491 aa17.59■□□□□ 0.41
USP28-204ENST00000537642 MORN1Q5T089 497 aa17.59■□□□□ 0.41
USP28-204ENST00000537642 NEDD1Q8NHV4 660 aa17.59■□□□□ 0.41
USP28-204ENST00000537642 SOCS4Q8WXH5 440 aa17.59■□□□□ 0.41
USP28-204ENST00000537642 USP6NLQ92738 828 aa17.59■□□□□ 0.41
USP28-204ENST00000537642 ATG4CQ96DT6 458 aa17.59■□□□□ 0.41
USP28-204ENST00000537642 RNF208Q9H0X6 261 aa17.59■□□□□ 0.41
USP28-204ENST00000537642 UNC93B1Q9H1C4 597 aa17.59■□□□□ 0.41
USP28-204ENST00000537642 MTMR4Q9NYA4 1195 aa17.59■□□□□ 0.41
USP28-204ENST00000537642 CLIP2Q9UDT6 1046 aa17.59■□□□□ 0.41
USP28-204ENST00000537642 ANAPC4Q9UJX5 808 aa17.59■□□□□ 0.41
USP28-204ENST00000537642 RAD21O60216 631 aa17.58■□□□□ 0.4
USP28-204ENST00000537642 GJB1P08034 283 aa17.58■□□□□ 0.4
USP28-204ENST00000537642 TSPY3P0CV98 308 aa17.58■□□□□ 0.4
USP28-204ENST00000537642 TSPY8P0CW00 308 aa17.58■□□□□ 0.4
USP28-204ENST00000537642 TFAP4Q01664 338 aa17.58■□□□□ 0.4
USP28-204ENST00000537642 FAM83BQ5T0W9 1011 aa17.58■□□□□ 0.4
USP28-204ENST00000537642 MB21D1Q8N884 522 aa17.58■□□□□ 0.4
USP28-204ENST00000537642 MKL1Q969V6 931 aa17.58■□□□□ 0.4
USP28-204ENST00000537642 SHISA4Q96DD7 197 aa17.58■□□□□ 0.4
USP28-204ENST00000537642 FBXO28Q9NVF7 368 aa17.58■□□□□ 0.4
USP28-204ENST00000537642 ZMYM6O95789 1325 aa17.57■□□□□ 0.4
USP28-204ENST00000537642 F5H6K3 240 aa17.57■□□□□ 0.4
USP28-204ENST00000537642 TTLL1O95922 423 aa17.57■□□□□ 0.4
USP28-204ENST00000537642 NDUFB10O96000 172 aa17.57■□□□□ 0.4
USP28-204ENST00000537642 HMGCRP04035 888 aa17.57■□□□□ 0.4
USP28-204ENST00000537642 XRCC5P13010 732 aaKnown RBP17.57■□□□□ 0.4
USP28-204ENST00000537642 KLRC3Q07444 240 aa17.57■□□□□ 0.4
USP28-204ENST00000537642 TRIM32Q13049 653 aa17.57■□□□□ 0.4
USP28-204ENST00000537642 SAMD1Q6SPF0 538 aaPredicted RBP17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms