RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 POTEB2H3BUK9 544 aa13.58□□□□□ -0.24
CLSTN3-206ENST00000535668 HMMRO75330 724 aa13.58□□□□□ -0.24
CLSTN3-206ENST00000535668 UBE3CQ15386 1083 aa13.58□□□□□ -0.24
CLSTN3-206ENST00000535668 LRRC26Q2I0M4 334 aa13.58□□□□□ -0.24
CLSTN3-206ENST00000535668 LRCH3Q96II8 777 aa13.58□□□□□ -0.24
CLSTN3-206ENST00000535668 FEZ1Q99689 392 aa13.58□□□□□ -0.24
CLSTN3-206ENST00000535668 PAGR1Q9BTK6 254 aa13.58□□□□□ -0.24
CLSTN3-206ENST00000535668 MOV10L1Q9BXT6 1211 aaKnown RBP13.58□□□□□ -0.24
CLSTN3-206ENST00000535668 SPATC1LQ9H0A9 340 aa13.58□□□□□ -0.24
CLSTN3-206ENST00000535668 CHMP4BQ9H444 224 aaKnown RBP13.58□□□□□ -0.24
CLSTN3-206ENST00000535668 RPAP3Q9H6T3 665 aaPredicted RBP13.58□□□□□ -0.24
CLSTN3-206ENST00000535668 DDX19BQ9UMR2 479 aa13.58□□□□□ -0.24
CLSTN3-206ENST00000535668 STXBP5LQ9Y2K9 1186 aa13.58□□□□□ -0.24
CLSTN3-206ENST00000535668 IVNS1ABPQ9Y6Y0 642 aa13.58□□□□□ -0.24
CLSTN3-206ENST00000535668 ZNF532Q9HCE3 1301 aa13.58□□□□□ -0.24
CLSTN3-206ENST00000535668 DSG3P32926 999 aa13.57□□□□□ -0.24
CLSTN3-206ENST00000535668 ADD2P35612 726 aa13.57□□□□□ -0.24
CLSTN3-206ENST00000535668 SEPT2Q15019 361 aa13.57□□□□□ -0.24
CLSTN3-206ENST00000535668 C12orf60Q5U649 245 aa13.57□□□□□ -0.24
CLSTN3-206ENST00000535668 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.57□□□□□ -0.24
CLSTN3-206ENST00000535668 SH2D4AQ9H788 454 aa13.57□□□□□ -0.24
CLSTN3-206ENST00000535668 MTMR10Q9NXD2 777 aa13.57□□□□□ -0.24
CLSTN3-206ENST00000535668 MCM9Q9NXL9 1143 aa13.57□□□□□ -0.24
CLSTN3-206ENST00000535668 DIS3Q9Y2L1 958 aaKnown RBP13.57□□□□□ -0.24
CLSTN3-206ENST00000535668 NDUFB9Q9Y6M9 179 aa13.57□□□□□ -0.24
CLSTN3-206ENST00000535668 SEPT4O43236 478 aa13.56□□□□□ -0.24
CLSTN3-206ENST00000535668 POLR3DP05423 398 aaPredicted RBP13.56□□□□□ -0.24
CLSTN3-206ENST00000535668 HNRNPUQ00839 825 aaKnown RBP eCLIP13.56□□□□□ -0.24
CLSTN3-206ENST00000535668 ATP2B2Q01814 1243 aa13.56□□□□□ -0.24
CLSTN3-206ENST00000535668 ARRDC4Q8NCT1 418 aa13.56□□□□□ -0.24
CLSTN3-206ENST00000535668 TRPV1Q8NER1 839 aa13.56□□□□□ -0.24
CLSTN3-206ENST00000535668 NPLOC4Q8TAT6 608 aa13.56□□□□□ -0.24
CLSTN3-206ENST00000535668 HAUS7Q99871 368 aa13.56□□□□□ -0.24
CLSTN3-206ENST00000535668 VCPKMTQ9H867 229 aa13.56□□□□□ -0.24
CLSTN3-206ENST00000535668 SLC5A4Q9NY91 659 aa13.56□□□□□ -0.24
CLSTN3-206ENST00000535668 ZMYND8Q9ULU4 1186 aaPredicted RBP13.56□□□□□ -0.24
CLSTN3-206ENST00000535668 NAV1Q8NEY1 1877 aa13.55□□□□□ -0.24
CLSTN3-206ENST00000535668 UNC80Q8N2C7 3258 aa13.55□□□□□ -0.24
CLSTN3-206ENST00000535668 WDR46O15213 610 aaKnown RBP13.55□□□□□ -0.24
CLSTN3-206ENST00000535668 SLC25A27O95847 323 aa13.55□□□□□ -0.24
CLSTN3-206ENST00000535668 ADORA2AP29274 412 aa13.55□□□□□ -0.24
CLSTN3-206ENST00000535668 GIMAP6Q6P9H5 292 aa13.55□□□□□ -0.24
CLSTN3-206ENST00000535668 C16orf86Q6ZW13 317 aa13.55□□□□□ -0.24
CLSTN3-206ENST00000535668 LCORLQ8N3X6 602 aa13.55□□□□□ -0.24
CLSTN3-206ENST00000535668 MSL3Q8N5Y2 521 aaKnown RBP13.55□□□□□ -0.24
CLSTN3-206ENST00000535668 PANK1Q8TE04 598 aa13.55□□□□□ -0.24
CLSTN3-206ENST00000535668 KANSL2Q9H9L4 492 aa13.55□□□□□ -0.24
CLSTN3-206ENST00000535668 SYNPO2Q9UMS6 1093 aa13.55□□□□□ -0.24
CLSTN3-206ENST00000535668 PARP14Q460N5 1801 aa13.55□□□□□ -0.24
CLSTN3-206ENST00000535668 COBLO75128 1261 aa13.54□□□□□ -0.24
CLSTN3-206ENST00000535668 ERCC3P19447 782 aa13.54□□□□□ -0.24
CLSTN3-206ENST00000535668 COPB2P35606 906 aa13.54□□□□□ -0.24
CLSTN3-206ENST00000535668 KIAA1755Q5JYT7 1200 aa13.54□□□□□ -0.24
CLSTN3-206ENST00000535668 UBE2OQ9C0C9 1292 aaKnown RBP13.54□□□□□ -0.24
CLSTN3-206ENST00000535668 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.54□□□□□ -0.24
CLSTN3-206ENST00000535668 IL1RAPL2Q9NP60 686 aa13.54□□□□□ -0.24
CLSTN3-206ENST00000535668 PAG1Q9NWQ8 432 aa13.54□□□□□ -0.24
CLSTN3-206ENST00000535668 GREB1LQ9C091 1923 aaPredicted RBP13.53□□□□□ -0.24
CLSTN3-206ENST00000535668 GOLIM4O00461 696 aa13.53□□□□□ -0.24
CLSTN3-206ENST00000535668 ATP2A1O14983 1001 aa13.53□□□□□ -0.24
CLSTN3-206ENST00000535668 IFIT2P09913 472 aaKnown RBP13.53□□□□□ -0.24
CLSTN3-206ENST00000535668 CYP2C19P33261 490 aa13.53□□□□□ -0.24
CLSTN3-206ENST00000535668 ZYXQ15942 572 aaKnown RBP13.53□□□□□ -0.24
CLSTN3-206ENST00000535668 SBK1Q52WX2 424 aa13.53□□□□□ -0.24
CLSTN3-206ENST00000535668 RIOX2Q8IUF8 465 aa13.53□□□□□ -0.24
CLSTN3-206ENST00000535668 DEFB123Q8N688 67 aa13.53□□□□□ -0.24
CLSTN3-206ENST00000535668 SDR42E1Q8WUS8 393 aa13.53□□□□□ -0.24
CLSTN3-206ENST00000535668 ARHGEF10LQ9HCE6 1279 aa13.53□□□□□ -0.24
CLSTN3-206ENST00000535668 SYN1P17600 705 aa13.52□□□□□ -0.25
CLSTN3-206ENST00000535668 CDK8P49336 464 aa13.52□□□□□ -0.25
CLSTN3-206ENST00000535668 EVX2Q03828 476 aa13.52□□□□□ -0.25
CLSTN3-206ENST00000535668 ICA1Q05084 483 aa13.52□□□□□ -0.25
CLSTN3-206ENST00000535668 ZSCAN25Q6NSZ9 544 aa13.52□□□□□ -0.25
CLSTN3-206ENST00000535668 DPP9Q86TI2 863 aa13.52□□□□□ -0.25
CLSTN3-206ENST00000535668 SLC17A8Q8NDX2 589 aa13.52□□□□□ -0.25
CLSTN3-206ENST00000535668 REPS2Q8NFH8 660 aa13.52□□□□□ -0.25
CLSTN3-206ENST00000535668 MAML3Q96JK9 1138 aa13.52□□□□□ -0.25
CLSTN3-206ENST00000535668 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.52□□□□□ -0.25
CLSTN3-206ENST00000535668 SENP6Q9GZR1 1112 aaPredicted RBP13.52□□□□□ -0.25
CLSTN3-206ENST00000535668 ZNF214Q9UL59 606 aaPredicted RBP13.52□□□□□ -0.25
CLSTN3-206ENST00000535668 NCOR1O75376 2440 aa13.52□□□□□ -0.25
CLSTN3-206ENST00000535668 VCANP13611 3396 aa13.52□□□□□ -0.25
CLSTN3-206ENST00000535668 CDH23Q9H251 3354 aa13.52□□□□□ -0.25
CLSTN3-206ENST00000535668 USP17L12C9JPN9 530 aa13.51□□□□□ -0.25
CLSTN3-206ENST00000535668 USP17L21D6R901 530 aa13.51□□□□□ -0.25
CLSTN3-206ENST00000535668 FCER1AP12319 257 aa13.51□□□□□ -0.25
CLSTN3-206ENST00000535668 AKR1B1P15121 316 aa13.51□□□□□ -0.25
CLSTN3-206ENST00000535668 TMEM132BQ14DG7 1078 aa13.51□□□□□ -0.25
CLSTN3-206ENST00000535668 ZNF792Q3KQV3 632 aa13.51□□□□□ -0.25
CLSTN3-206ENST00000535668 SLC39A5Q6ZMH5 540 aa13.51□□□□□ -0.25
CLSTN3-206ENST00000535668 CWC22Q9HCG8 908 aaKnown RBP13.51□□□□□ -0.25
CLSTN3-206ENST00000535668 PHF24Q9UPV7 400 aa13.51□□□□□ -0.25
CLSTN3-206ENST00000535668 LTBP2Q14767 1821 aa13.5□□□□□ -0.25
CLSTN3-206ENST00000535668 VWA5AO00534 786 aa13.5□□□□□ -0.25
CLSTN3-206ENST00000535668 FLOT1O75955 427 aa13.5□□□□□ -0.25
CLSTN3-206ENST00000535668 MBD4O95243 580 aa13.5□□□□□ -0.25
CLSTN3-206ENST00000535668 CTR9Q6PD62 1173 aa13.5□□□□□ -0.25
CLSTN3-206ENST00000535668 MAMDC4Q6UXC1 1216 aa13.5□□□□□ -0.25
CLSTN3-206ENST00000535668 MIER1Q8N108 512 aa13.5□□□□□ -0.25
CLSTN3-206ENST00000535668 SLC44A5Q8NCS7 719 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms