RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 MPHOSPH10O00566 681 aaKnown RBP13.71□□□□□ -0.21
VPS28-214ENST00000531032 MBD4O95243 580 aa13.71□□□□□ -0.21
VPS28-214ENST00000531032 IGHA2P01877 340 aa13.71□□□□□ -0.21
VPS28-214ENST00000531032 BMP8BP34820 402 aa13.71□□□□□ -0.21
VPS28-214ENST00000531032 SLFNL1Q499Z3 407 aa13.71□□□□□ -0.21
VPS28-214ENST00000531032 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.71□□□□□ -0.212e-7■■■■□ 23.7
VPS28-214ENST00000531032 ATP8A2Q9NTI2 1148 aa13.71□□□□□ -0.21
VPS28-214ENST00000531032 IVNS1ABPQ9Y6Y0 642 aa13.71□□□□□ -0.21
VPS28-214ENST00000531032 PRKAB2O43741 272 aa13.7□□□□□ -0.22
VPS28-214ENST00000531032 COG2Q14746 738 aa13.7□□□□□ -0.22
VPS28-214ENST00000531032 KIAA1755Q5JYT7 1200 aa13.7□□□□□ -0.22
VPS28-214ENST00000531032 WDR78Q5VTH9 848 aa13.7□□□□□ -0.22
VPS28-214ENST00000531032 MFSD14CQ5VZR4 134 aa13.7□□□□□ -0.22
VPS28-214ENST00000531032 LPAR1Q92633 364 aa13.7□□□□□ -0.22
VPS28-214ENST00000531032 DYNLL2Q96FJ2 89 aa13.7□□□□□ -0.22
VPS28-214ENST00000531032 HOXC10Q9NYD6 342 aa13.7□□□□□ -0.22
VPS28-214ENST00000531032 RCAN3Q9UKA8 241 aa13.7□□□□□ -0.22
VPS28-214ENST00000531032 ZMYND8Q9ULU4 1186 aaPredicted RBP13.7□□□□□ -0.22
VPS28-214ENST00000531032 PARP14Q460N5 1801 aa13.69□□□□□ -0.22
VPS28-214ENST00000531032 SOX1O00570 391 aaPredicted RBP13.69□□□□□ -0.22
VPS28-214ENST00000531032 AKR1B1P15121 316 aa13.69□□□□□ -0.22
VPS28-214ENST00000531032 UBE3CQ15386 1083 aa13.69□□□□□ -0.22
VPS28-214ENST00000531032 SIAH1Q8IUQ4 282 aa13.69□□□□□ -0.22
VPS28-214ENST00000531032 MB21D1Q8N884 522 aa13.69□□□□□ -0.22
VPS28-214ENST00000531032 SHCBP1Q8NEM2 672 aa13.69□□□□□ -0.22
VPS28-214ENST00000531032 NPLOC4Q8TAT6 608 aa13.69□□□□□ -0.22
VPS28-214ENST00000531032 MOV10L1Q9BXT6 1211 aaKnown RBP13.69□□□□□ -0.22
VPS28-214ENST00000531032 TANGO6Q9C0B7 1094 aa13.69□□□□□ -0.22
VPS28-214ENST00000531032 BCL11AQ9H165 835 aa13.69□□□□□ -0.22
VPS28-214ENST00000531032 TMX2Q9Y320 296 aa13.69□□□□□ -0.22
VPS28-214ENST00000531032 STRNO43815 780 aa13.68□□□□□ -0.22
VPS28-214ENST00000531032 MSCO60682 206 aa13.68□□□□□ -0.22
VPS28-214ENST00000531032 CHGBP05060 677 aa13.68□□□□□ -0.22
VPS28-214ENST00000531032 SYN1P17600 705 aa13.68□□□□□ -0.22
VPS28-214ENST00000531032 MAGEA10P43363 369 aaPredicted RBP13.68□□□□□ -0.22
VPS28-214ENST00000531032 ATP2B2Q01814 1243 aa13.68□□□□□ -0.22
VPS28-214ENST00000531032 ICA1Q05084 483 aa13.68□□□□□ -0.22
VPS28-214ENST00000531032 C12orf60Q5U649 245 aa13.68□□□□□ -0.22
VPS28-214ENST00000531032 CLEC10AQ8IUN9 316 aa13.68□□□□□ -0.22
VPS28-214ENST00000531032 CCDC17Q96LX7 622 aa13.68□□□□□ -0.22
VPS28-214ENST00000531032 LRRCC1Q9C099 1032 aa13.68□□□□□ -0.22
VPS28-214ENST00000531032 SPATC1LQ9H0A9 340 aa13.68□□□□□ -0.22
VPS28-214ENST00000531032 SH2D4AQ9H788 454 aa13.68□□□□□ -0.22
VPS28-214ENST00000531032 VCPKMTQ9H867 229 aa13.68□□□□□ -0.22
VPS28-214ENST00000531032 ARHGEF10LQ9HCE6 1279 aa13.68□□□□□ -0.22
VPS28-214ENST00000531032 DDX20Q9UHI6 824 aaKnown RBP13.68□□□□□ -0.22
VPS28-214ENST00000531032 USP17L12C9JPN9 530 aa13.67□□□□□ -0.22
VPS28-214ENST00000531032 USP17L21D6R901 530 aa13.67□□□□□ -0.22
VPS28-214ENST00000531032 SMIM22K7EJ46 135 aa13.67□□□□□ -0.22
VPS28-214ENST00000531032 ERCC3P19447 782 aa13.67□□□□□ -0.22
VPS28-214ENST00000531032 ADORA2AP29274 412 aa13.67□□□□□ -0.22
VPS28-214ENST00000531032 DSG3P32926 999 aa13.67□□□□□ -0.22
VPS28-214ENST00000531032 CDK8P49336 464 aa13.67□□□□□ -0.22
VPS28-214ENST00000531032 LRRC26Q2I0M4 334 aa13.67□□□□□ -0.22
VPS28-214ENST00000531032 C20orf194Q5TEA3 1177 aa13.67□□□□□ -0.22
VPS28-214ENST00000531032 OLFML2BQ68BL8 750 aa13.67□□□□□ -0.22
VPS28-214ENST00000531032 C16orf86Q6ZW13 317 aa13.67□□□□□ -0.22
VPS28-214ENST00000531032 AMOTL1Q8IY63 956 aa13.67□□□□□ -0.22
VPS28-214ENST00000531032 LRCH3Q96II8 777 aa13.67□□□□□ -0.22
VPS28-214ENST00000531032 CYP2D7A0A087X1C5 515 aa13.66□□□□□ -0.22
VPS28-214ENST00000531032 WDR46O15213 610 aaKnown RBP13.66□□□□□ -0.22
VPS28-214ENST00000531032 FLOT1O75955 427 aa13.66□□□□□ -0.22
VPS28-214ENST00000531032 CYBAP13498 195 aa13.66□□□□□ -0.22
VPS28-214ENST00000531032 CYP2C19P33261 490 aa13.66□□□□□ -0.22
VPS28-214ENST00000531032 ZSCAN25Q6NSZ9 544 aa13.66□□□□□ -0.22
VPS28-214ENST00000531032 ABRAQ8N0Z2 381 aa13.66□□□□□ -0.22
VPS28-214ENST00000531032 SPICE1Q8N0Z3 855 aa13.66□□□□□ -0.22
VPS28-214ENST00000531032 TRPV1Q8NER1 839 aa13.66□□□□□ -0.22
VPS28-214ENST00000531032 DDRGK1Q96HY6 314 aa13.66□□□□□ -0.22
VPS28-214ENST00000531032 PUS7LQ9H0K6 701 aaKnown RBP13.66□□□□□ -0.22
VPS28-214ENST00000531032 SLC4A4Q9Y6R1 1079 aa13.66□□□□□ -0.22
VPS28-214ENST00000531032 DNAH12Q6ZR08 3092 aa13.66□□□□□ -0.22
VPS28-214ENST00000531032 GREB1LQ9C091 1923 aaPredicted RBP13.66□□□□□ -0.22
VPS28-214ENST00000531032 SMARCA5O60264 1052 aaPredicted RBP13.65□□□□□ -0.22
VPS28-214ENST00000531032 CNGA1P29973 690 aa13.65□□□□□ -0.22
VPS28-214ENST00000531032 LRIT3Q3SXY7 679 aa13.65□□□□□ -0.22
VPS28-214ENST00000531032 GPR153Q6NV75 609 aa13.65□□□□□ -0.22
VPS28-214ENST00000531032 CTR9Q6PD62 1173 aa13.65□□□□□ -0.22
VPS28-214ENST00000531032 DPP9Q86TI2 863 aa13.65□□□□□ -0.22
VPS28-214ENST00000531032 TDHQ8IZJ6 230 aa13.65□□□□□ -0.22
VPS28-214ENST00000531032 ATG4CQ96DT6 458 aa13.65□□□□□ -0.22
VPS28-214ENST00000531032 MROH8Q9H579 483 aa13.65□□□□□ -0.22
VPS28-214ENST00000531032 ARPP21Q9UBL0 812 aaPredicted RBP13.65□□□□□ -0.22
VPS28-214ENST00000531032 ADAMTS5Q9UNA0 930 aa13.65□□□□□ -0.22
VPS28-214ENST00000531032 COL11A1P12107 1806 aaPredicted RBP13.64□□□□□ -0.23
VPS28-214ENST00000531032 DNM1LO00429 736 aa13.64□□□□□ -0.23
VPS28-214ENST00000531032 COBLO75128 1261 aa13.64□□□□□ -0.23
VPS28-214ENST00000531032 EEF2P13639 858 aaKnown RBP13.64□□□□□ -0.23
VPS28-214ENST00000531032 KANSL2Q9H9L4 492 aa13.64□□□□□ -0.23
VPS28-214ENST00000531032 ECHDC1Q9NTX5 307 aa13.64□□□□□ -0.23
VPS28-214ENST00000531032 SLC5A4Q9NY91 659 aa13.64□□□□□ -0.23
VPS28-214ENST00000531032 ROBO3Q96MS0 1386 aa13.63□□□□□ -0.23
VPS28-214ENST00000531032 SLC25A27O95847 323 aa13.63□□□□□ -0.23
VPS28-214ENST00000531032 PLS1Q14651 629 aa13.63□□□□□ -0.23
VPS28-214ENST00000531032 TMEM132BQ14DG7 1078 aa13.63□□□□□ -0.23
VPS28-214ENST00000531032 NCAPG2Q86XI2 1143 aa13.63□□□□□ -0.23
VPS28-214ENST00000531032 KBTBD3Q8NAB2 608 aa13.63□□□□□ -0.23
VPS28-214ENST00000531032 STRBPQ96SI9 672 aaKnown RBP13.63□□□□□ -0.23
VPS28-214ENST00000531032 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.63□□□□□ -0.23
VPS28-214ENST00000531032 UBE2OQ9C0C9 1292 aaKnown RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms