RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 MOV10L1Q9BXT6 1211 aaKnown RBP17.38■□□□□ 0.37
CPSF1-201ENST00000526271 MYH7P12883 1935 aa17.37■□□□□ 0.37
CPSF1-201ENST00000526271 GREB1LQ9C091 1923 aaPredicted RBP17.37■□□□□ 0.37
CPSF1-201ENST00000526271 PRKAB2O43741 272 aa17.37■□□□□ 0.37
CPSF1-201ENST00000526271 SENP6Q9GZR1 1112 aaPredicted RBP17.37■□□□□ 0.37
CPSF1-201ENST00000526271 DCP1AQ9NPI6 582 aaPredicted RBP17.37■□□□□ 0.37
CPSF1-201ENST00000526271 STXBP5LQ9Y2K9 1186 aa17.37■□□□□ 0.37
CPSF1-201ENST00000526271 ZNF532Q9HCE3 1301 aa17.37■□□□□ 0.37
CPSF1-201ENST00000526271 PLXNA1Q9UIW2 1896 aa17.36■□□□□ 0.37
CPSF1-201ENST00000526271 CYP2D7A0A087X1C5 515 aa17.36■□□□□ 0.37
CPSF1-201ENST00000526271 POTEB2H3BUK9 544 aa17.36■□□□□ 0.37
CPSF1-201ENST00000526271 ATN1P54259 1190 aaPredicted RBP17.36■□□□□ 0.37
CPSF1-201ENST00000526271 USP14P54578 494 aa17.36■□□□□ 0.37
CPSF1-201ENST00000526271 MAP3K12Q12852 859 aa17.36■□□□□ 0.37
CPSF1-201ENST00000526271 WDR78Q5VTH9 848 aa17.36■□□□□ 0.37
CPSF1-201ENST00000526271 ANO1Q5XXA6 986 aa17.36■□□□□ 0.37
CPSF1-201ENST00000526271 TTC6Q86TZ1 520 aa17.36■□□□□ 0.37
CPSF1-201ENST00000526271 RHPN1Q8TCX5 695 aa17.36■□□□□ 0.37
CPSF1-201ENST00000526271 LPAR1Q92633 364 aa17.36■□□□□ 0.37
CPSF1-201ENST00000526271 MAGEB6P1A0A0J9YX57 407 aa17.35■□□□□ 0.37
CPSF1-201ENST00000526271 AKR1B1P15121 316 aa17.35■□□□□ 0.37
CPSF1-201ENST00000526271 ADORA2AP29274 412 aa17.35■□□□□ 0.37
CPSF1-201ENST00000526271 PRAMEF19Q5SWL8 479 aa17.35■□□□□ 0.37
CPSF1-201ENST00000526271 ERCC3P19447 782 aa17.34■□□□□ 0.37
CPSF1-201ENST00000526271 CCNA1P78396 465 aa17.34■□□□□ 0.37
CPSF1-201ENST00000526271 GJC2Q5T442 439 aaPredicted RBP17.34■□□□□ 0.37
CPSF1-201ENST00000526271 SLC9C2Q5TAH2 1124 aa17.34■□□□□ 0.37
CPSF1-201ENST00000526271 MFSD14CQ5VZR4 134 aa17.34■□□□□ 0.37
CPSF1-201ENST00000526271 CCAR1Q8IX12 1150 aaKnown RBP17.34■□□□□ 0.37
CPSF1-201ENST00000526271 FTSJ3Q8IY81 847 aaKnown RBP17.34■□□□□ 0.37
CPSF1-201ENST00000526271 ATG4CQ96DT6 458 aa17.34■□□□□ 0.37
CPSF1-201ENST00000526271 SPATC1LQ9H0A9 340 aa17.34■□□□□ 0.37
CPSF1-201ENST00000526271 ARMT1Q9H993 441 aa17.34■□□□□ 0.37
CPSF1-201ENST00000526271 MCM9Q9NXL9 1143 aa17.34■□□□□ 0.37
CPSF1-201ENST00000526271 DNM1LO00429 736 aa17.33■□□□□ 0.36
CPSF1-201ENST00000526271 GOLIM4O00461 696 aa17.33■□□□□ 0.36
CPSF1-201ENST00000526271 POLR3DP05423 398 aaPredicted RBP17.33■□□□□ 0.36
CPSF1-201ENST00000526271 RTP1P59025 263 aa17.33■□□□□ 0.36
CPSF1-201ENST00000526271 ATP2B2Q01814 1243 aa17.33■□□□□ 0.36
CPSF1-201ENST00000526271 C9orf50Q5SZB4 431 aa17.33■□□□□ 0.36
CPSF1-201ENST00000526271 SH3RF1Q7Z6J0 888 aa17.33■□□□□ 0.36
CPSF1-201ENST00000526271 CERS3Q8IU89 383 aa17.33■□□□□ 0.36
CPSF1-201ENST00000526271 ITGB8P26012 769 aa17.32■□□□□ 0.36
CPSF1-201ENST00000526271 CNGA1P29973 690 aa17.32■□□□□ 0.36
CPSF1-201ENST00000526271 DSG3P32926 999 aa17.32■□□□□ 0.36
CPSF1-201ENST00000526271 COG2Q14746 738 aa17.32■□□□□ 0.36
CPSF1-201ENST00000526271 SNX17Q15036 470 aa17.32■□□□□ 0.36
CPSF1-201ENST00000526271 OLFML2BQ68BL8 750 aa17.32■□□□□ 0.36
CPSF1-201ENST00000526271 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.32■□□□□ 0.36
CPSF1-201ENST00000526271 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.32■□□□□ 0.36
CPSF1-201ENST00000526271 CABP5Q9NP86 173 aa17.32■□□□□ 0.36
CPSF1-201ENST00000526271 HNRNPUQ00839 825 aaKnown RBP eCLIP17.31■□□□□ 0.36
CPSF1-201ENST00000526271 TMEM132BQ14DG7 1078 aa17.31■□□□□ 0.36
CPSF1-201ENST00000526271 TMED8Q6PL24 325 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-201ENST00000526271 SPICE1Q8N0Z3 855 aa17.31■□□□□ 0.36
CPSF1-201ENST00000526271 SHCBP1Q8NEM2 672 aa17.31■□□□□ 0.36
CPSF1-201ENST00000526271 DNAJC2Q99543 621 aaKnown RBP17.31■□□□□ 0.36
CPSF1-201ENST00000526271 FBXO28Q9NVF7 368 aa17.31■□□□□ 0.36
CPSF1-201ENST00000526271 ADAMTS5Q9UNA0 930 aa17.31■□□□□ 0.36
CPSF1-201ENST00000526271 TMX2Q9Y320 296 aa17.31■□□□□ 0.36
CPSF1-201ENST00000526271 APBB1O00213 710 aa17.3■□□□□ 0.36
CPSF1-201ENST00000526271 MPHOSPH10O00566 681 aaKnown RBP17.3■□□□□ 0.36
CPSF1-201ENST00000526271 GLRX3O76003 335 aaKnown RBP17.3■□□□□ 0.36
CPSF1-201ENST00000526271 TAL1P17542 331 aaPredicted RBP17.3■□□□□ 0.36
CPSF1-201ENST00000526271 ADD2P35612 726 aa17.3■□□□□ 0.36
CPSF1-201ENST00000526271 SHHQ15465 462 aa17.3■□□□□ 0.36
CPSF1-201ENST00000526271 FAM47AQ5JRC9 791 aa17.3■□□□□ 0.36
CPSF1-201ENST00000526271 SLC39A5Q6ZMH5 540 aa17.3■□□□□ 0.36
CPSF1-201ENST00000526271 ERC1Q8IUD2 1116 aa17.3■□□□□ 0.36
CPSF1-201ENST00000526271 REPS2Q8NFH8 660 aa17.3■□□□□ 0.36
CPSF1-201ENST00000526271 CRNKL1Q9BZJ0 848 aaKnown RBP17.3■□□□□ 0.36
CPSF1-201ENST00000526271 TANGO6Q9C0B7 1094 aa17.3■□□□□ 0.36
CPSF1-201ENST00000526271 IVNS1ABPQ9Y6Y0 642 aa17.3■□□□□ 0.36
CPSF1-201ENST00000526271 TTC28Q96AY4 2481 aa17.29■□□□□ 0.36
CPSF1-201ENST00000526271 ZBED9Q6R2W3 1325 aa17.29■□□□□ 0.36
CPSF1-201ENST00000526271 TRIM43BA6NCK2 446 aa17.29■□□□□ 0.36
CPSF1-201ENST00000526271 MBD4O95243 580 aa17.29■□□□□ 0.36
CPSF1-201ENST00000526271 LRRC41Q15345 812 aa17.29■□□□□ 0.36
CPSF1-201ENST00000526271 TRIM60Q495X7 471 aa17.29■□□□□ 0.36
CPSF1-201ENST00000526271 C12orf60Q5U649 245 aa17.29■□□□□ 0.36
CPSF1-201ENST00000526271 FAM109BQ6ICB4 259 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-201ENST00000526271 TMEM179Q6ZVK1 233 aa17.29■□□□□ 0.36
CPSF1-201ENST00000526271 TRIM43Q96BQ3 446 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-201ENST00000526271 MAML3Q96JK9 1138 aa17.29■□□□□ 0.36
CPSF1-201ENST00000526271 FAM161BQ96MY7 647 aa17.29■□□□□ 0.36
CPSF1-201ENST00000526271 COL25A1Q9BXS0 654 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-201ENST00000526271 VCPKMTQ9H867 229 aa17.29■□□□□ 0.36
CPSF1-201ENST00000526271 CWC22Q9HCG8 908 aaKnown RBP17.29■□□□□ 0.36
CPSF1-201ENST00000526271 PDLIM7Q9NR12 457 aa17.29■□□□□ 0.36
CPSF1-201ENST00000526271 ZBTB40Q9NUA8 1239 aa17.29■□□□□ 0.36
CPSF1-201ENST00000526271 MCM3APO60318 1980 aa17.29■□□□□ 0.36
CPSF1-201ENST00000526271 SEPT4O43236 478 aa17.28■□□□□ 0.36
CPSF1-201ENST00000526271 MSCO60682 206 aa17.28■□□□□ 0.36
CPSF1-201ENST00000526271 CDK8P49336 464 aa17.28■□□□□ 0.36
CPSF1-201ENST00000526271 EPHB4P54760 987 aa17.28■□□□□ 0.36
CPSF1-201ENST00000526271 DPP9Q86TI2 863 aa17.28■□□□□ 0.36
CPSF1-201ENST00000526271 LENG1Q96BZ8 264 aaPredicted RBP17.28■□□□□ 0.36
CPSF1-201ENST00000526271 HOXC10Q9NYD6 342 aa17.28■□□□□ 0.36
CPSF1-201ENST00000526271 ATP11BQ9Y2G3 1177 aa17.28■□□□□ 0.36
CPSF1-201ENST00000526271 STRNO43815 780 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms