RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 NOC3LQ8WTT2 800 aaKnown RBP11.5□□□□□ -0.57
MCF2-209ENST00000520602 EEF2KMTQ96G04 330 aa11.5□□□□□ -0.57
MCF2-209ENST00000520602 EXOC1Q9NV70 894 aa11.5□□□□□ -0.57
MCF2-209ENST00000520602 TCHHQ07283 1943 aa11.5□□□□□ -0.57
MCF2-209ENST00000520602 SPDYE4A6NLX3 237 aa11.5□□□□□ -0.57
MCF2-209ENST00000520602 ADKP55263 362 aaKnown RBP11.5□□□□□ -0.57
MCF2-209ENST00000520602 AXDND1Q5T1B0 1012 aaPredicted RBP11.5□□□□□ -0.57
MCF2-209ENST00000520602 USP49Q70CQ1 688 aa11.5□□□□□ -0.57
MCF2-209ENST00000520602 RIOK1Q9BRS2 568 aaKnown RBP11.5□□□□□ -0.57
MCF2-209ENST00000520602 ZSWIM4Q9H7M6 989 aa11.5□□□□□ -0.57
MCF2-209ENST00000520602 SRPRBQ9Y5M8 271 aaKnown RBP11.5□□□□□ -0.57
MCF2-209ENST00000520602 CNTNAP4Q9C0A0 1308 aa11.49□□□□□ -0.57
MCF2-209ENST00000520602 U2AF2P26368 475 aaKnown RBP eCLIP11.49□□□□□ -0.57
MCF2-209ENST00000520602 HMGB2P26583 209 aaKnown RBP11.49□□□□□ -0.57
MCF2-209ENST00000520602 SF3B2Q13435 895 aaKnown RBP11.49□□□□□ -0.57
MCF2-209ENST00000520602 KARSQ15046 597 aaKnown RBP11.49□□□□□ -0.57
MCF2-209ENST00000520602 PRR5LQ6MZQ0 368 aa11.49□□□□□ -0.57
MCF2-209ENST00000520602 ARGLU1Q9NWB6 273 aaPredicted RBP11.49□□□□□ -0.57
MCF2-209ENST00000520602 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.49□□□□□ -0.57
MCF2-209ENST00000520602 TCEAL9Q9UHQ7 104 aa11.49□□□□□ -0.57
MCF2-209ENST00000520602 AFDNP55196 1824 aaKnown RBP11.49□□□□□ -0.57
MCF2-209ENST00000520602 AMPD3Q01432 767 aa11.49□□□□□ -0.57
MCF2-209ENST00000520602 GRIN1Q05586 938 aa11.49□□□□□ -0.57
MCF2-209ENST00000520602 NTRK3Q16288 839 aa11.49□□□□□ -0.57
MCF2-209ENST00000520602 PPP4R3BQ5MIZ7 849 aa11.49□□□□□ -0.57
MCF2-209ENST00000520602 DHX40Q8IX18 779 aaKnown RBP11.49□□□□□ -0.57
MCF2-209ENST00000520602 SRBD1Q8N5C6 995 aaKnown RBP11.49□□□□□ -0.57
MCF2-209ENST00000520602 BAG1Q99933 345 aaPredicted RBP11.49□□□□□ -0.57
MCF2-209ENST00000520602 KCNF1Q9H3M0 494 aa11.49□□□□□ -0.57
MCF2-209ENST00000520602 IMPACTQ9P2X3 320 aa11.49□□□□□ -0.57
MCF2-209ENST00000520602 MAN1B1Q9UKM7 699 aa11.49□□□□□ -0.57
MCF2-209ENST00000520602 SALL1Q9NSC2 1324 aa11.49□□□□□ -0.57
MCF2-209ENST00000520602 SYNRGQ9UMZ2 1314 aa11.49□□□□□ -0.57
MCF2-209ENST00000520602 PSMA7O14818 248 aa11.49□□□□□ -0.57
MCF2-209ENST00000520602 PPEF1O14829 653 aaPredicted RBP11.49□□□□□ -0.57
MCF2-209ENST00000520602 CASQ1P31415 396 aa11.49□□□□□ -0.57
MCF2-209ENST00000520602 NONOQ15233 471 aaKnown RBP eCLIP11.49□□□□□ -0.57
MCF2-209ENST00000520602 PLA2G4DQ86XP0 818 aa11.49□□□□□ -0.57
MCF2-209ENST00000520602 DBNDD1Q9H9R9 158 aa11.49□□□□□ -0.57
MCF2-209ENST00000520602 KCPQ6ZWJ8 1503 aa11.49□□□□□ -0.57
MCF2-209ENST00000520602 MROH7-TTC4A0A0A0MT08 1334 aa11.48□□□□□ -0.57
MCF2-209ENST00000520602 TRPM3Q9HCF6 1732 aaPredicted RBP11.48□□□□□ -0.57
MCF2-209ENST00000520602 STAG2Q8N3U4 1231 aa11.48□□□□□ -0.57
MCF2-209ENST00000520602 DEF6Q9H4E7 631 aa11.48□□□□□ -0.57
MCF2-209ENST00000520602 CDK8P49336 464 aa11.48□□□□□ -0.57
MCF2-209ENST00000520602 KIF4BQ2VIQ3 1234 aa11.48□□□□□ -0.57
MCF2-209ENST00000520602 WWC2Q6AWC2 1192 aa11.48□□□□□ -0.57
MCF2-209ENST00000520602 TRMT1LQ7Z2T5 733 aaKnown RBP11.48□□□□□ -0.57
MCF2-209ENST00000520602 IGSF22Q8N9C0 903 aa11.48□□□□□ -0.57
MCF2-209ENST00000520602 CTAGE1Q96RT6 745 aa11.48□□□□□ -0.57
MCF2-209ENST00000520602 LZTFL1Q9NQ48 299 aa11.48□□□□□ -0.57
MCF2-209ENST00000520602 SLC10A5Q5PT55 438 aa11.48□□□□□ -0.57
MCF2-209ENST00000520602 CCDC43Q96MW1 224 aaKnown RBP11.48□□□□□ -0.57
MCF2-209ENST00000520602 FAM217BQ9NTX9 383 aaPredicted RBP11.48□□□□□ -0.57
MCF2-209ENST00000520602 SCN11AQ9UI33 1791 aa11.48□□□□□ -0.57
MCF2-209ENST00000520602 ERCC3P19447 782 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 UBXN1Q04323 297 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 REXO1Q8N1G1 1221 aaKnown RBP11.47□□□□□ -0.57
MCF2-209ENST00000520602 NLGN1Q8N2Q7 840 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 FBXL16Q8N461 479 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 NKX2-3Q8TAU0 364 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 SAMSN1Q9NSI8 373 aaKnown RBP11.47□□□□□ -0.57
MCF2-209ENST00000520602 KIF5CO60282 957 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 PRR29P0C7W0 189 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 ENOX2Q16206 610 aaKnown RBP11.47□□□□□ -0.57
MCF2-209ENST00000520602 TEX35Q5T0J7 233 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 KIAA1328Q86T90 577 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 DGKHQ86XP1 1220 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 TEKT1Q969V4 418 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 TMEM47Q9BQJ4 181 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 TAB2Q9NYJ8 693 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 ALDH1B1P30837 517 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 TECP42680 631 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 METTL16Q86W50 562 aaKnown RBP11.47□□□□□ -0.57
MCF2-209ENST00000520602 CERS3Q8IU89 383 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 MTA3Q9BTC8 594 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 ALS2Q96Q42 1657 aa11.47□□□□□ -0.57
MCF2-209ENST00000520602 H0YIN7 160 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 IKBKBO14920 756 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 SLFN14P0C7P3 912 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 TRIM21P19474 475 aaKnown RBP11.46□□□□□ -0.57
MCF2-209ENST00000520602 HSPA1LP34931 641 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 PLCD1P51178 756 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 TERF1P54274 439 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 CACNB3P54284 484 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 SPAG1Q07617 926 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 FKBP15Q5T1M5 1219 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 C12orf60Q5U649 245 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 SARM1Q6SZW1 724 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 VEZTQ9HBM0 779 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 PRDM10Q9NQV6 1147 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 PCDHA4Q9UN74 947 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 MMP10P09238 476 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 PDE4DQ08499 809 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 NOM1Q5C9Z4 860 aaKnown RBP11.46□□□□□ -0.57
MCF2-209ENST00000520602 KRT79Q5XKE5 535 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 KRT25Q7Z3Z0 450 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 CAGE1Q8TC20 777 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 PIGSQ96S52 555 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 LZTS2Q9BRK4 669 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms