RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 PEX10O60683 326 aa35.49■■■■□ 3.27
SYNPO-203ENST00000518872 INHAP05111 366 aa35.49■■■■□ 3.27
SYNPO-203ENST00000518872 TDO2P48775 406 aa35.49■■■■□ 3.27
SYNPO-203ENST00000518872 CLEC10AQ8IUN9 316 aa35.49■■■■□ 3.27
SYNPO-203ENST00000518872 NACAP1Q9BZK3 213 aa35.49■■■■□ 3.27
SYNPO-203ENST00000518872 CAPN2P17655 700 aa35.48■■■■□ 3.27
SYNPO-203ENST00000518872 RASA1P20936 1047 aa35.48■■■■□ 3.27
SYNPO-203ENST00000518872 GJA8P48165 433 aa35.48■■■■□ 3.27
SYNPO-203ENST00000518872 CCNA1P78396 465 aa35.48■■■■□ 3.27
SYNPO-203ENST00000518872 LNPKQ9C0E8 428 aa35.48■■■■□ 3.27
SYNPO-203ENST00000518872 RNF208Q9H0X6 261 aa35.48■■■■□ 3.27
SYNPO-203ENST00000518872 PORCNQ9H237 461 aa35.48■■■■□ 3.27
SYNPO-203ENST00000518872 MINDY4BA8MYZ0 360 aa35.47■■■■□ 3.27
SYNPO-203ENST00000518872 COG2Q14746 738 aa35.47■■■■□ 3.27
SYNPO-203ENST00000518872 KIAA1755Q5JYT7 1200 aa35.47■■■■□ 3.27
SYNPO-203ENST00000518872 NUDT12Q9BQG2 462 aa35.47■■■■□ 3.27
SYNPO-203ENST00000518872 GNL3Q9BVP2 549 aaKnown RBP eCLIP35.47■■■■□ 3.27
SYNPO-203ENST00000518872 ZNF287Q9HBT7 754 aa35.47■■■■□ 3.27
SYNPO-203ENST00000518872 HOXC10Q9NYD6 342 aa35.47■■■■□ 3.27
SYNPO-203ENST00000518872 SUPT16HQ9Y5B9 1047 aaKnown RBP35.47■■■■□ 3.27
SYNPO-203ENST00000518872 IGHDP01880 384 aa35.46■■■■□ 3.27
SYNPO-203ENST00000518872 APPP05067 770 aa35.46■■■■□ 3.27
SYNPO-203ENST00000518872 XRCC5P13010 732 aaKnown RBP35.46■■■■□ 3.27
SYNPO-203ENST00000518872 SHISA4Q96DD7 197 aa35.46■■■■□ 3.27
SYNPO-203ENST00000518872 WDR46O15213 610 aaKnown RBP35.45■■■■□ 3.27
SYNPO-203ENST00000518872 HMGCRP04035 888 aa35.45■■■■□ 3.27
SYNPO-203ENST00000518872 EEF2P13639 858 aaKnown RBP35.45■■■■□ 3.27
SYNPO-203ENST00000518872 PRPF38BQ5VTL8 546 aaKnown RBP35.45■■■■□ 3.27
SYNPO-203ENST00000518872 GPR142Q7Z601 462 aa35.45■■■■□ 3.27
SYNPO-203ENST00000518872 CHD1LQ86WJ1 897 aa35.45■■■■□ 3.27
SYNPO-203ENST00000518872 USP6NLQ92738 828 aa35.45■■■■□ 3.27
SYNPO-203ENST00000518872 UNC93B1Q9H1C4 597 aa35.45■■■■□ 3.27
SYNPO-203ENST00000518872 MKNK2Q9HBH9 465 aa35.45■■■■□ 3.27
SYNPO-203ENST00000518872 NUCB1Q02818 461 aa35.44■■■■□ 3.26
SYNPO-203ENST00000518872 PLEKHH3Q7Z736 793 aa35.44■■■■□ 3.26
SYNPO-203ENST00000518872 CCAR1Q8IX12 1150 aaKnown RBP35.44■■■■□ 3.26
SYNPO-203ENST00000518872 OSBPL3Q9H4L5 887 aa35.44■■■■□ 3.26
SYNPO-203ENST00000518872 BTBD7Q9P203 1132 aa35.44■■■■□ 3.26
SYNPO-203ENST00000518872 MORN1Q5T089 497 aa35.43■■■■□ 3.26
SYNPO-203ENST00000518872 TANGO6Q9C0B7 1094 aa35.43■■■■□ 3.26
SYNPO-203ENST00000518872 PAK6Q9NQU5 681 aaPredicted RBP35.43■■■■□ 3.26
SYNPO-203ENST00000518872 MB21D1Q8N884 522 aa35.42■■■■□ 3.26
SYNPO-203ENST00000518872 NAPBQ9H115 298 aa35.42■■■■□ 3.26
SYNPO-203ENST00000518872 HELLSQ9NRZ9 838 aa35.42■■■■□ 3.26
SYNPO-203ENST00000518872 MYH4Q9Y623 1939 aa35.42■■■■□ 3.26
SYNPO-203ENST00000518872 TRMT44Q8IYL2 757 aaKnown RBP35.41■■■■□ 3.26
SYNPO-203ENST00000518872 U2AF1L4Q8WU68 220 aaKnown RBP35.41■■■■□ 3.26
SYNPO-203ENST00000518872 NYAP2Q9P242 653 aa35.41■■■■□ 3.26
SYNPO-203ENST00000518872 IGKV6D-41A0A0C4DH26 115 aa35.4■■■■□ 3.26
SYNPO-203ENST00000518872 FOXP2O15409 715 aa35.4■■■■□ 3.26
SYNPO-203ENST00000518872 DSG3P32926 999 aa35.4■■■■□ 3.26
SYNPO-203ENST00000518872 B4GALNT3Q6L9W6 998 aa35.4■■■■□ 3.26
SYNPO-203ENST00000518872 GOPCQ9HD26 462 aa35.4■■■■□ 3.26
SYNPO-203ENST00000518872 PLIN4Q96Q06 1357 aa35.39■■■■□ 3.26
SYNPO-203ENST00000518872 SGPL1O95470 568 aa35.39■■■■□ 3.26
SYNPO-203ENST00000518872 SPICE1Q8N0Z3 855 aa35.39■■■■□ 3.26
SYNPO-203ENST00000518872 TRIB2Q92519 343 aa35.39■■■■□ 3.26
SYNPO-203ENST00000518872 CYP2B6P20813 491 aa35.38■■■■□ 3.25
SYNPO-203ENST00000518872 RGS2P41220 211 aa35.38■■■■□ 3.25
SYNPO-203ENST00000518872 PPARAQ07869 468 aa35.38■■■■□ 3.25
SYNPO-203ENST00000518872 UBE2Q1Q7Z7E8 422 aa35.38■■■■□ 3.25
SYNPO-203ENST00000518872 PLEKHM2Q8IWE5 1019 aa35.38■■■■□ 3.25
SYNPO-203ENST00000518872 ZNF444Q8N0Y2 327 aaPredicted RBP35.38■■■■□ 3.25
SYNPO-203ENST00000518872 SYNPO2Q9UMS6 1093 aa35.38■■■■□ 3.25
SYNPO-203ENST00000518872 ZNF236Q9UL36 1845 aa35.38■■■■□ 3.25
SYNPO-203ENST00000518872 SLC3A2P08195 630 aaKnown RBP35.37■■■■□ 3.25
SYNPO-203ENST00000518872 ATP2B2Q01814 1243 aa35.37■■■■□ 3.25
SYNPO-203ENST00000518872 PDE4BQ07343 736 aa35.37■■■■□ 3.25
SYNPO-203ENST00000518872 CCDC129Q6ZRS4 1044 aa35.37■■■■□ 3.25
SYNPO-203ENST00000518872 APBA2Q99767 749 aa35.37■■■■□ 3.25
SYNPO-203ENST00000518872 SLC15A5A6NIM6 579 aa35.36■■■■□ 3.25
SYNPO-203ENST00000518872 FLOT1O75955 427 aa35.36■■■■□ 3.25
SYNPO-203ENST00000518872 MAP3K21Q5TCX8 1036 aa35.36■■■■□ 3.25
SYNPO-203ENST00000518872 STK11IPQ8N1F8 1099 aa35.36■■■■□ 3.25
SYNPO-203ENST00000518872 SHCBP1Q8NEM2 672 aa35.36■■■■□ 3.25
SYNPO-203ENST00000518872 ADAMTS5Q9UNA0 930 aa35.36■■■■□ 3.25
SYNPO-203ENST00000518872 COL11A1P12107 1806 aaPredicted RBP35.36■■■■□ 3.25
SYNPO-203ENST00000518872 RPTORQ8N122 1335 aa35.35■■■■□ 3.25
SYNPO-203ENST00000518872 PTPREP23469 700 aa35.35■■■■□ 3.25
SYNPO-203ENST00000518872 MAP2K5Q13163 448 aa35.35■■■■□ 3.25
SYNPO-203ENST00000518872 ALX1Q15699 326 aa35.35■■■■□ 3.25
SYNPO-203ENST00000518872 SPATC1LQ9H0A9 340 aa35.35■■■■□ 3.25
SYNPO-203ENST00000518872 CRISPLD2Q9H0B8 497 aa35.35■■■■□ 3.25
SYNPO-203ENST00000518872 XRN2Q9H0D6 950 aaKnown RBP eCLIP35.35■■■■□ 3.25
SYNPO-203ENST00000518872 CWC22Q9HCG8 908 aaKnown RBP35.35■■■■□ 3.25
SYNPO-203ENST00000518872 HOXC6P09630 235 aa35.34■■■■□ 3.25
SYNPO-203ENST00000518872 GRB14Q14449 540 aa35.34■■■■□ 3.25
SYNPO-203ENST00000518872 MCMDC2Q4G0Z9 681 aa35.34■■■■□ 3.25
SYNPO-203ENST00000518872 MKL1Q969V6 931 aa35.34■■■■□ 3.25
SYNPO-203ENST00000518872 MOV10L1Q9BXT6 1211 aaKnown RBP35.34■■■■□ 3.25
SYNPO-203ENST00000518872 PRDM1O75626 825 aa35.33■■■■□ 3.25
SYNPO-203ENST00000518872 NEDD1Q8NHV4 660 aa35.33■■■■□ 3.25
SYNPO-203ENST00000518872 ATG4CQ96DT6 458 aa35.33■■■■□ 3.25
SYNPO-203ENST00000518872 DEFB118Q96PH6 123 aa35.33■■■■□ 3.25
SYNPO-203ENST00000518872 HMX1Q9NP08 348 aaPredicted RBP35.33■■■■□ 3.25
SYNPO-203ENST00000518872 ANAPC4Q9UJX5 808 aa35.33■■■■□ 3.25
SYNPO-203ENST00000518872 IVNS1ABPQ9Y6Y0 642 aa35.33■■■■□ 3.25
SYNPO-203ENST00000518872 A0A0D9SFI3 127 aa35.32■■■■□ 3.24
SYNPO-203ENST00000518872 ZKSCAN1P17029 563 aaPredicted RBP35.32■■■■□ 3.24
SYNPO-203ENST00000518872 FAM227BQ96M60 508 aa35.32■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms