RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 STX8Q9UNK0 236 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 ZNF202O95125 648 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 KRT8P05787 483 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 MTX1Q13505 466 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 TMCO4Q5TGY1 634 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 DCUN1D2Q6PH85 259 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 LRRC8AQ8IWT6 810 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 WIZO95785 1651 aa12.33□□□□□ -0.44
LIMCH1-217ENST00000512946 MAPK13O15264 365 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 SPAG7O75391 227 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 ESRRBO95718 433 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 ATP6V1E1P36543 226 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 RANBP1P43487 201 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 CDR2Q01850 454 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 PPWD1Q96BP3 646 aaKnown RBP12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 HELLSQ9NRZ9 838 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 N4BP1O75113 896 aaKnown RBP12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 KRT5P13647 590 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 IRX5P78411 483 aaPredicted RBP12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 CEP70Q8NHQ1 597 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 C10orf88Q9H8K7 445 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 IRAK4Q9NWZ3 460 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 DAPK3O43293 454 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 STAT1P42224 750 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 POSTNQ15063 836 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 NONOQ15233 471 aaKnown RBP eCLIP12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 E2F4Q16254 413 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 EMBQ6PCB8 327 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 TOM1L2Q6ZVM7 507 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 RSAD2Q8WXG1 361 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 ATP6V0A1Q93050 837 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 MAD1L1Q9Y6D9 718 aa12.32□□□□□ -0.44
LIMCH1-217ENST00000512946 EXOC5O00471 708 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 DEAF1O75398 565 aaPredicted RBP12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 ATICP31939 592 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 GUCY2FP51841 1108 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 ATG16L1Q676U5 607 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 ITGB1BP2Q9UKP3 347 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 NCAPD3P42695 1498 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 MCF2P10911 925 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 SERPINB10P48595 397 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 HNRNPH2P55795 449 aaKnown RBP12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 CUL3Q13618 768 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 RETREG2Q8NC44 543 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 GIPC2Q8TF65 315 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 XPO4Q9C0E2 1151 aaKnown RBP12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 ATF2P15336 505 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 SNX1Q13596 522 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 HADHQ16836 314 aaKnown RBP12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 TRMT112Q9UI30 125 aaKnown RBP12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 H7C1D1 291 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 RNF113AO15541 343 aaKnown RBP12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 ADCY8P40145 1251 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 PPP2R5DQ14738 602 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 CSRNP1Q96S65 589 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 ARHGAP26Q9UNA1 814 aa12.31□□□□□ -0.44
LIMCH1-217ENST00000512946 CTNND1O60716 968 aaKnown RBP12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 HNRNPCL1O60812 293 aaKnown RBP12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 CWF19L2Q2TBE0 894 aaKnown RBP12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 NXNQ6DKJ4 435 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 CATSPER1Q8NEC5 780 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 CHMLP26374 656 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 BIRC3Q13489 604 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 CASC4Q6P4E1 433 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 SESTD1Q86VW0 696 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 GSDMAQ96QA5 445 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 TM6SF1Q9BZW5 370 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 ANKRD2Q9GZV1 360 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 RAB20Q9NX57 234 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 GNGT2O14610 69 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 DAB1O75553 588 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 SERPINB2P05120 415 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 ATAD2BQ9ULI0 1458 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 RPS6KB1P23443 525 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 EEF1B2P24534 225 aaKnown RBP12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 ADALQ6DHV7 355 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 ANO5Q75V66 913 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 MRRFQ96E11 262 aaKnown RBP12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 PCDHB15Q9Y5E8 787 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 SLC4A4Q9Y6R1 1079 aa12.3□□□□□ -0.44
LIMCH1-217ENST00000512946 NCOA1Q15788 1441 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 IPO5O00410 1097 aaKnown RBP12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 SLC30A9Q6PML9 568 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 EP400NLQ6ZTU2 488 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 IFT122Q9HBG6 1241 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 ANKIB1Q9P2G1 1089 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 TEKT2Q9UIF3 430 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 SNX5Q9Y5X3 404 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 F6X3S4 739 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 KDM1AO60341 852 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 BRD1O95696 1058 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 ESRRAP11474 423 aaPredicted RBP12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 KIAA2013Q8IYS2 634 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 FGD4Q96M96 766 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 SPINK5Q9NQ38 1064 aaPredicted RBP12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 KCNK3O14649 394 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 H2AFZP0C0S5 128 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 PDE6CP51160 858 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms